TCONS_00000465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000465
Unique NameTCONS_00000465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000465 ID=TCONS_00000465|Name=TCONS_00000465|organism=Clytia hemisphaerica|type=transcript|length=1768bp
TNTTGAAAATGAAGTTATTGGCATCTTTGGGATTTGTCCTGCTCATTGCA
GCTCTTCAAGCAGATGCTGCTGAAAAATGTCAGTCAGAGGTGGTGGTCAC
CTTAGATTTATCAGATACAATCACCatagaagaattgaagcaagtTAAAA
ACTTTGTCAAAAATGTCGGTAAAGAACTCTCCAAAAATAAAGATAACCGA
GTTGGAGTGGCCTCTTTTGCTGAGACAGCAAAATCTGAAGCTGAATGTTC
ACAAGGTACAATCAGATATGATCAATTCTCATCACAAGTCAATGCAATCC
AAAAATATGGTGAATTTACCAATATTGAGGCTGGTTTATTGAAAGCTGAA
GCTATGTTAGATCGCGCAGGATGCTCCTTGAGTCGACCGGGACGTCATAT
CATCCTCTTGGTTTCTGATGGTAATGGCAACTATGGTTATGAATCTTCAT
TAATGCGAGAAGCTGAAAGAATCAGAAATAAAGGGatcaaaattttctca
cttGGTATCCAGAACCAACATTACCGCGAAGGTGTCTTGACTCGAATCTC
TGGTCATTCTGAATACGTCAAACCAGTTGCTGGTTTTGAATCTTTGAAAG
ATATCGACTTCCGACAAATCATCGACAAAATCTCATGTTTTGCCAACGTT
GTCAAACCAACAGCAAAAATAACCACAACTACTCCTAAACCAACAACAAC
GACAACCGACGAGCCAACGACAACCACCGACTATTACACAACAACTACCG
AAGAACCAACGACAACCACCGACTATTACACAACAACCACCGAGGAGCCA
ACGACAACCACCGAAGAAATAACGACAACGACCGAAGAGCCAACAACAAC
CACCGAATACTACACAACAACGACCGAGGAACCAACGACAACGACCGAAG
AAATAACGACAACAACCGAGGAACCAACGACCACCGACTATTACACGACA
ACCACCGAACCAATCACGACTACCGAAGaaatcacaacaacaacaacaaa
gaaacCCATGCCAGTACCAAAAACATGCGATTGTGTTATTCCAAAAGACT
TCATGCCATGCTTAACCTGGACCAAAGCTGATATCTTGACCAACTTCGAG
GGTGACTGTGTTGTTGACAAGTTTAAGAAAGCTTTGGAATACATCAACCA
CCGTGCAATGGCCATCGTCGGCAAATTGCTTGCATTCAGACAATGTCAAA
AACACATTCAAGATCACATCATCACCACCTCCATCAAACAATTCGGTTCA
GGACTTCCTAGTTCACCAATCATTGACAAGTCTTCAGTATTGCAGAGATT
GTTCTTAAAAGAATCACAATGTGAATTTAACATTCGTGGTCGTTTGATGC
AATGGAAATTACAATTGATGACTGTCAGACAAATGATTGAACATGAAATC
TTGTTCCAACAAAATGGATTCTTCAGTGCTTTTGACTccGTTCCATCTGG
TAAAGTGAACACTGGTGCATTGTTGAagaaaatgatgatgatgaagaaaa
aataaattaccaaaaaaatgaaaatgaaactttttgaaaagtcaCGATGT
CTAATTTATTAATTAGTTATTATTATGAATGAAGACTAAAGAAATTGtta
taaaatcttattaatttatcaacacaaaacaaaaattattttttatatgc
attttatacttttacttgcattaatttttttgaaaaaataaaattttatt
tatttgcaatttaaaaaaaatatttctgttAGATGAGATTCTTAgttcat
gaaaaataaagatcttgc
Run BLAST on NCBI

protein sequence of TCONS_00000465-protein

>TCONS_00000465-protein ID=TCONS_00000465-protein|Name=TCONS_00000465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp
LKMKLLASLGFVLLIAALQADAAEKCQSEVVVTLDLSDTITIEELKQVKN
FVKNVGKELSKNKDNRVGVASFAETAKSEAECSQGTIRYDQFSSQVNAIQ
KYGEFTNIEAGLLKAEAMLDRAGCSLSRPGRHIILLVSDGNGNYGYESSL
MREAERIRNKGIKIFSLGIQNQHYREGVLTRISGHSEYVKPVAGFESLKD
IDFRQIIDKISCFANVVKPTAKITTTTPKPTTTTTDEPTTTTDYYTTTTE
EPTTTTDYYTTTTEEPTTTTEEITTTTEEPTTTTEYYTTTTEEPTTTTEE
ITTTTEEPTTTDYYTTTTEPITTTEEITTTTTKKPMPVPKTCDCVIPKDF
MPCLTWTKADILTNFEGDCVVDKFKKALEYINHRAMAIVGKLLAFRQCQK
HIQDHIITTSIKQFGSGLPSSPIIDKSSVLQRLFLKESQCEFNIRGRLMQ
WKLQLMTVRQMIEHEILFQQNGFFSAFDSVPSGKVNTGALLKKMMMMKKK
Run BLAST on NCBI

transcript from alignment at sc0000002:1099667..1103490+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000465 ID=TCONS_00000465|Name=TCONS_00000465|organism=Clytia hemisphaerica|type=transcript|length=3824bp|location=Sequence derived from alignment at sc0000002:1099667..1103490+ (Clytia hemisphaerica)
TNTTGAAAATGAAGTTATTGGCATCTTTGGGATTTGTCCTGCTCATTGCA
GCTCTTCAAGCAGGTATGCATGGTTAATAAATGAACtcattcgaaaaaaa
acttgacCCCAGAGATATTTTTGTTCTCCTGACTAAAACAATGTGATAAG
TGTTTCTCCTCGGTGTCTCGTCGATACTAGTACCTCGACCAAAagccaaa
tatttcattttcaccaCGCAAAAAGCGATGGTCGATATTTAAATTAGTAG
AGAGAATAATAATAAGGCATTTAAAATGTCTTTTTGGGGGAAGGCATTCA
TAACGAAGTTATGACTTAGTTTATGACTAGTTTATCAAGTAAGTTATCAG
AGATCGGCAACCTTGTAAGCACTTCGATTCTCTCTAAAATCACATGATCT
CGAGATACAGACAACTCTCTCTCTAATCCGACCCTTAATAGTTCGAATCT
TTATGTAATTCGAAGTGAAACATTGGTTCCCACAGTCAGAAGGTAGTGTT
AAATTCTCTATTtaattcaaatatttcctaAGGCGAAAGGatttcttggt
cccttgaagatcgaattagagagtcaaCTACGATGATTTAATAAGAAGTC
TAATTGATTCTTTGTATACTAATTACCTAGATGCTGCTGAAAAATGTCAG
TCAGAGGTGGTGGTCACCTTAGATTTATCAGATACAATCACCatagaaga
attgaagcaagtTAAAAACTTTGTCAAAAATGTCGGTAAAGAACTCTCCA
AAAATAAAGATAACCGAGTTGGAGTGGCCTCTTTTGCTGAGACAGCAAAA
TCTGAAGCTGAATGTTCACAAGGTACAATCAGATATGATCAATTCTCATC
ACAAGTCAATGCAATCCAAAAATATGGTGAATTTACCAATATTGAGGCTG
GTTTATTGAAAGCTGAAGCTATGTTAGATCGCGCAGGATGCTCCTTGAGT
CGACCGGGACGTCATATCATCCTCTTGGTTTCTGATGGTAATGGCAACTA
TGGTTATGAATCTTCATTAATGCGAGAAGCTGAAAGAATCAGAAATAAAG
GGatcaaaattttctcacttGGTATCCAGAACCAACATTACCGCGAAGGT
GTCTTGACTCGAATCTCTGGTCATTCTGAATACGTCAAACCAGTTGCTGG
TTTTGAATCTTTGAAAGATATCGACTTCCGACAAATCATCGACAAAATCT
CATGTTTTGCCAACGTTGTCAAACCAACAGCAAAAATAACCACAACTACT
CCTAAACCAACAACAACGACAACCGACGAGCCAACGACAACCACCGACTA
TTACACAACAACTACCGAAGAACCAACGACAACCACCGACTATTACACAA
CAACCACCGAGGAGCCAACGACAACCACCGAAGAAATAACGACAACGACC
GAAGAGCCAACAACAACCACCGAATACTACACAACAACGACCGAGGAACC
AACGACAACGACCGAAGAAATAACGACAACAACCGAGGAACCAACGACCA
CCGACTATTACACGACAACCACCGAACCAATCACGACTACCGAAGaaatc
acaacaacaacaacaaagaaacCCATGCCAGTACCAAAAAGTAGGAAATG
CATTTATGTTTTCACTCACGCAACACGTCTTTATCTACAACATAAGTTAA
ACGTAGGCAATCACCTGTTTCAATAATTTCCTCCACTTAGATTTCACAAC
CtagattttaatttcttaattccaaatttttattatttctagCATGCGAT
TGTGTTATTCCAAAAGACTTCATGCCATGCTTAACCTGGACCAAAGCTGA
TATCTTGACCAACTTCGAGGGTAAGTCTTCTTTCCACAACCCATCATTTT
ATTAAATCCTTCTTACATGCCTCATTTTAATGTGACGCTCCTACCACACT
CTTTACTTCGGTGCAAACCTTTTTCTACAGCCCTTTGtatctttttattg
aagttGTTCCACTTACATTCCCTTACACTTTCACATTGGTGTAAAACCAT
CCATATCCCTTATATATTGTGCAAAACCAATTCCTCATCCTTAACATCGG
TTGGTGTTTATGTCTTTTTAAATCCTTTATATTGGTGAAAAACTCTGACC
ACATGCCTTATTACCTTGGAGTAAAACCTTCTCTACCTAACTTACATTGG
TCTAAAACCCTCTCTTCGTCCGTTACGTTGGATTGGTGTAAATTTCTTTC
CACACCCTTTACATTGGTGTAAATCTCTTTCCACATTCCTTACATTGATG
TAAAACACTCTCTAAACTCCTTTCGTGGATGCAAAACCATTTCATAACCC
CTTACATTGGTGTAAATTTCTTTCCACACCCTTTACATTGGTGTAAATCT
CTTTCCACATTCCTTACATTGTTGTAAAACCCTCTCTTAAATTCCTTCTT
TGGATACAAAACCATTTCATAACCCCTTACATTGGTGTAAATTTATTTCC
ACACCCTTTACATTCGTTACAGGTGACTGTGTTGTTGACAAGTTTAAGAA
AGCTTTGGAATACATCAACCACCGTGCAATGGCCATCGTCGGCAAATTGC
TTGCATTCAGACAATGTCAAAAACACATTCAAGATCACATCATCACCACC
TCCATCAAACAATTCGGTTCAGGACTTCCTAGTTCACCAATCATTGACAA
GTCTTCAGTATTGCAGAGATTGTTCTTAAAAGAATCACAATGTGAATTTA
ACATTCGTGGTCGTTTGATGCAATGGAAATTACAATTGATGACTGTCAGA
CAAATGATTGAACATGAAATCTTGTTCCAACAAAATGGATTCTTCAGTGC
TTTTGACTGTAAGTAGACTAATAGATTGGGCTATGCCAGAAAAtatccgt
acatggggggggcTTGGGttgaggatatattgtccgggaggtagcgaaaa
atcatcaaaatttgcttgTCCGTaaggtaaatttgctctgtccggggggt
caactgatgcttgtccggggggtaaaacctGTTGTCCGGGGGAGggcaaa
agtcactttgtccagGCGGTAAATCACTGataattgttatatcctccatc
tccccatattcaaattttttctggaaaagcccatttttagTTAGAATTAT
CAAGATTGCAAGCGTTGGACTCCCTTTGATTCATATTTGGAATAGGCAAG
CGCTCGTTGTGAACTGGTCCGAAACGTAATGTATTTGTGCCATTTTTCAG
GTCTCCCtttatcaaaactaatcatcCATGTCTATCAAACAGAAAGGGTG
TCTTTAATAGATTGCACTATCAATGAATGAATTACGTAACAACTATGATA
AATTGAACATAAGCTTTATGATGAAGAAAGGAGGTGCGCTTTAATGCTCA
CACGGTAGAACAAAGAAAAGTATTTCGTAAAACatatttttgctttgttt
tgaaaatgctATGTAAGCAAATGATAGGTAAGTTAAATGTAGAATTTGTC
CTTTAACGGGTTCaggaaatcaatttttttcttttcttttcagccGTTCC
ATCTGGTAAAGTGAACACTGGTGCATTGTTGAagaaaatgatgatgatga
agaaaaaataaattaccaaaaaaatgaaaatgaaactttttgaaaagtca
CGATGTCTAATTTATTAATTAGTTATTATTATGAATGAAGACTAAAGAAA
TTGttataaaatcttattaatttatcaacacaaaacaaaaattatttttt
atatgcattttatacttttacttgcattaatttttttgaaaaaataaaat
tttatttatttgcaatttaaaaaaaatatttctgttAGATGAGATTCTTA
gttcatgaaaaataaagatcttgc

Coding sequence (CDS) from alignment at sc0000002:1099667..1103490+

>TCONS_00000465 ID=TCONS_00000465|Name=TCONS_00000465|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0000002:1099667..1103490+ (Clytia hemisphaerica)
TTGAAAATGAAGTTATTGGCATCTTTGGGATTTGTCCTGCTCATTGCAGC
TCTTCAAGCAGATGCTGCTGAAAAATGTCAGTCAGAGGTGGTGGTCACCT
TAGATTTATCAGATACAATCACCatagaagaattgaagcaagtTAAAAAC
TTTGTCAAAAATGTCGGTAAAGAACTCTCCAAAAATAAAGATAACCGAGT
TGGAGTGGCCTCTTTTGCTGAGACAGCAAAATCTGAAGCTGAATGTTCAC
AAGGTACAATCAGATATGATCAATTCTCATCACAAGTCAATGCAATCCAA
AAATATGGTGAATTTACCAATATTGAGGCTGGTTTATTGAAAGCTGAAGC
TATGTTAGATCGCGCAGGATGCTCCTTGAGTCGACCGGGACGTCATATCA
TCCTCTTGGTTTCTGATGGTAATGGCAACTATGGTTATGAATCTTCATTA
ATGCGAGAAGCTGAAAGAATCAGAAATAAAGGGatcaaaattttctcact
tGGTATCCAGAACCAACATTACCGCGAAGGTGTCTTGACTCGAATCTCTG
GTCATTCTGAATACGTCAAACCAGTTGCTGGTTTTGAATCTTTGAAAGAT
ATCGACTTCCGACAAATCATCGACAAAATCTCATGTTTTGCCAACGTTGT
CAAACCAACAGCAAAAATAACCACAACTACTCCTAAACCAACAACAACGA
CAACCGACGAGCCAACGACAACCACCGACTATTACACAACAACTACCGAA
GAACCAACGACAACCACCGACTATTACACAACAACCACCGAGGAGCCAAC
GACAACCACCGAAGAAATAACGACAACGACCGAAGAGCCAACAACAACCA
CCGAATACTACACAACAACGACCGAGGAACCAACGACAACGACCGAAGAA
ATAACGACAACAACCGAGGAACCAACGACCACCGACTATTACACGACAAC
CACCGAACCAATCACGACTACCGAAGaaatcacaacaacaacaacaaaga
aacCCATGCCAGTACCAAAAACATGCGATTGTGTTATTCCAAAAGACTTC
ATGCCATGCTTAACCTGGACCAAAGCTGATATCTTGACCAACTTCGAGGG
TGACTGTGTTGTTGACAAGTTTAAGAAAGCTTTGGAATACATCAACCACC
GTGCAATGGCCATCGTCGGCAAATTGCTTGCATTCAGACAATGTCAAAAA
CACATTCAAGATCACATCATCACCACCTCCATCAAACAATTCGGTTCAGG
ACTTCCTAGTTCACCAATCATTGACAAGTCTTCAGTATTGCAGAGATTGT
TCTTAAAAGAATCACAATGTGAATTTAACATTCGTGGTCGTTTGATGCAA
TGGAAATTACAATTGATGACTGTCAGACAAATGATTGAACATGAAATCTT
GTTCCAACAAAATGGATTCTTCAGTGCTTTTGACTccGTTCCATCTGGTA
AAGTGAACACTGGTGCATTGTTGAagaaaatgatgatgatgaagaaaaaa
taa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000293XLOC_000293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000465-exon-sc0000002-1491911889:1099667..1099729TCONS_00000465-exon-sc0000002-1491911889:1099667..1099729Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1510915933:1099667..1099729TCONS_00000465-exon-sc0000002-1510915933:1099667..1099729Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1575043694:1099667..1099729TCONS_00000465-exon-sc0000002-1575043694:1099667..1099729Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1491911889:1100297..1101256TCONS_00000465-exon-sc0000002-1491911889:1100297..1101256Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1510915933:1100297..1101256TCONS_00000465-exon-sc0000002-1510915933:1100297..1101256Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1575043694:1100297..1101256TCONS_00000465-exon-sc0000002-1575043694:1100297..1101256Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1491911889:1101409..1101486TCONS_00000465-exon-sc0000002-1491911889:1101409..1101486Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1510915933:1101409..1101486TCONS_00000465-exon-sc0000002-1510915933:1101409..1101486Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1575043694:1101409..1101486TCONS_00000465-exon-sc0000002-1575043694:1101409..1101486Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1491911889:1102139..1102474TCONS_00000465-exon-sc0000002-1491911889:1102139..1102474Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1510915933:1102139..1102474TCONS_00000465-exon-sc0000002-1510915933:1102139..1102474Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1575043694:1102139..1102474TCONS_00000465-exon-sc0000002-1575043694:1102139..1102474Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1491911889:1103160..1103490TCONS_00000465-exon-sc0000002-1491911889:1103160..1103490Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1510915933:1103160..1103490TCONS_00000465-exon-sc0000002-1510915933:1103160..1103490Clytia hemisphaericaexon
TCONS_00000465-exon-sc0000002-1575043694:1103160..1103490TCONS_00000465-exon-sc0000002-1575043694:1103160..1103490Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000465-proteinTCONS_00000465-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1099667..1103490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0227567	0.0221914	0.0257663	0	0.122755	0.0970026	0	0.0273904	0	0.0950136	0	0.0151559	2.42148	16.4965	4.42413	11.2194	0.119584	0.0350199	0	0.0506281	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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