TCONS_00006271 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006271
Unique Name	TCONS_00006271
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1115

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000066:399536..404983+
coding sequence from alignment at sc0000066:399536..404983+

transcript sequence

>TCONS_00006271 ID=TCONS_00006271|Name=TCONS_00006271|organism=Clytia hemisphaerica|type=transcript|length=1115bp
ATTGGATCATATTACTTCAGTAGTTAATTTTAGCATAATGTAAAATCTTG
TTATCACAAGTTAcaattaaaaacaacaaaaaccaataaacagtgcgtca
caaacgaAGTCGAAGACAAGGACAGAAGGAAGAAAATGTATTACACTCAA
ACCTTTCCCATCATTTTGCTACTCTGTAATGTAgagATAACTCAGTCAAA
AGTCTCCTCTCACCATaAATTAATAAATGGTTATGAAGTTGTTTACCCAA
GAACAAAATACTTTGATAATAACCAAAAGGTTATTACCCAAAACCAACAT
CAAGATACAAAACATAAGGCAAATGTAAATTTTCAAGGACTTGGAAGGAA
ATTCAGgataaatttaaagaaaaattcaaatatcgTTTCTTCATCAAATA
CTCATCTTCATTTACTAAACGAAACTGGTAACGTTGTTGGGAAACATAGG
GTTGAAAATTGTTATTATAATGGCCAGTTGATGGGTGATGATCAAAGTTT
TGTCTCGCTAAGCCTTTGTAATGGAGTgcgAGGATTGATCAATACAGGTG
ATAGCAAGAGATACTATATCCAACCAATTCATAAAAGAGGTGCTGTCAAT
ATTGAAACTCAACCACACATCTTACGCCAAATATCGCCAGAGCTCagcat
caaaaatttctctctcgaTCACAAAACAGATCTAATcaattttgatgatg
ataaaaagaaagATCCATTACTTTTCAAACGTTCGAAACGCAGTGAAGAA
ACGGGCGAAAAGACCATCGAAACATTGCTGACGTTAGATCGAAGTATGGC
ACAATTTTACGGTGTTGATGCAGCCAAGGAATATGCACTAACTGTTGCCA
ATGTGGCACACAACATATTAAGAGATTCATCAATTGGACCTAATCCAATC
AATTTGGTCATTTCCAAGATGGTTGTCATGACTACACCGTTGCCTGACTT
AACCATCAACCACCATGCAGAAAACACGTTGCAATCATTCGGTCGCTGGG
CAGAAAGAAGGAATGAGATCAATCAAGCAAACGATGACAAACCTGCTTAC
GATTTCGCTGTTCTCTTGACCAAGCAAGATATTTGCAAAGACCAAAACCA
ACCTTGCGAAAGTAC

Run BLAST on NCBI

protein sequence of TCONS_00006271-protein

>TCONS_00006271-protein ID=TCONS_00006271-protein|Name=TCONS_00006271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MYYTQTFPIILLLCNVEITQSKVSSHHKLINGYEVVYPRTKYFDNNQKVI
TQNQHQDTKHKANVNFQGLGRKFRINLKKNSNIVSSSNTHLHLLNETGNV
VGKHRVENCYYNGQLMGDDQSFVSLSLCNGVRGLINTGDSKRYYIQPIHK
RGAVNIETQPHILRQISPELSIKNFSLDHKTDLINFDDDKKKDPLLFKRS
KRSEETGEKTIETLLTLDRSMAQFYGVDAAKEYALTVANVAHNILRDSSI
GPNPINLVISKMVVMTTPLPDLTINHHAENTLQSFGRWAERRNEINQAND
DKPAYDFAVLLTKQDICKDQNQPCES

Run BLAST on NCBI

transcript from alignment at sc0000066:399536..404983+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006271 ID=TCONS_00006271|Name=TCONS_00006271|organism=Clytia hemisphaerica|type=transcript|length=5448bp|location=Sequence derived from alignment at sc0000066:399536..404983+ (Clytia hemisphaerica)
ATTGGATCATATTACTTCAGTAGTTAATTTTAGCATAATGTAAAATCTTG
TTATCACAAGTTAcaattaaaaacaacaaaaaccaataaacagtgcgtca
caaacgaAGTCGAAGACAAGGACAGAAGGAAGAAAATGTATTACACTCAA
ACCTTTCCCATCATTTTGCTACTCTGTAATGTAgaggtaagatttttttt
ttaaataccccATTCTTTCTGGTTCTTCAGTCTTTGTCTCAAGATGCAAG
CAAAATATGGAGGGGTGCCAGTTTGCAGCAGAAAAGTGTGTCACATTTGC
TCGAGATCTTGAGTGCACAACTCCGAAAAAGTCGAGTGCAGctgcaaaat
ttgaggttttcaggtgcaagtTTATAACCCCAAGTGCAGAGTTCCGCTAT
TTTCTCCTCAAGTGcagctaattttagcaattttttgcctttttgggcca
atttctGAGGTATAGGTGCACCTTGTCCGCCAAATTTCACAGGTGTGAAC
TTCCAGTGCAGAACttggtatttccaaatttttccttGAGTTCAGCGttg
ccatactctgcaaacttGGAGGGGTGTTTTATAAAAGGTTGTCGGGTAGA
ATGTAAATGACTACCattgcaaatttattttcaatcttgGGAACGGGTAT
ATTTCGTATAGTTTTTCTATTTGGAGGGGAGTTCTGTTATTATCAGTTAA
GATCAGGGTTGGACTCAACAGTCATGAGGCCCTTTTACGGGCACTCAATC
GTACCCTGTGTCAAAACATAGGGCTGCGTAGCAGTAGGGTGTGGAGTTAT
TATATATagggtctgtaaattacacactaTAAGTATTAGTTTGCTTTGCA
TCCTGCCATGTCTTGTTGCGCAACTGGTAAGACGTTGGGTTTGGAATCCA
TGGTTGCTTGCATTTAGTGTTTGAGCTGAGGCTTGGGAGCTTATTTCAGA
ATCAGTTTAGAAAAGCTAGAAAATAACTTGGAACAGTTCCAAAGACTTAG
AGTAACATCAGAAAGTAGAATGGAAGATAGGAAATAGAGAAAATAGAACA
AATAGATAGTGGAAAAGTCATTTACAGTCTACACAGCACCAGAAACAGCA
TTTTTTGGCTATATGCTATATATGCTACAGGCAGCTTGAGTCTACTCAAA
ATAGTGAATCCTTTTTAGCTCAAATTTAATTCATGTCAGTTTAGTTAAGT
TTAGTTCTATTTCTCAGAAAATTTACCTTTTGGAacaaaaaacttacaaa
aatagaagaatagaaaattttcctcgTCTTAGTTGTATTGTGTCAGTTTT
GAGAGAAGTTTTGTTGtaactttcaaaattcaaggtAGAAATGTTTTAGT
TTCATTTCCAACTTTTTTTGTTCTTAAGCCATATTTTCTCCCTAGATTCT
GaaatttaaagataaaatctCCTCATGTAccaaaatttcgaaacaaaTTT
TAGAATTCTGaaataaaatttgcaagattacCTAAAACATGAAGTAAAAA
CAGTCAATTTTTGCAATACCGAAATATAGTAGGCCCCAGATTTGGTACAA
CAAGACAAAAGGTTTTAAAAACGATGAAGTACACTTGGCAACTTTGTTAC
CTTAAAATCATGAATCTGTCGTCAGTTGGTCAGAAAATTTAGAAACACCA
ATATTGAGTCTGTacgaatattttttttccaaataatgAGCCAAGTAGAA
ATGATTAATCCTTTAACCTAGCATACTTTGtaagtaaaatttgcaaaaaa
aaattgtcctaaGTAGAATATAAATATAATCACAGAATGAAATTTACAGA
ATTTGCAGCTATTTTGGTATTCAAGGAGGCCTGTCTGTAGATATTGTGGC
CCTATTCTGACTAACTTTAACCTTTTTGAATCCTTTTTATACCACCATTA
AAAATTATCACCTGCTTAAGTGAGTTTTTTTACTCCTAAAAACGAAAATA
TGCGACTGAGCCTCTAGTCAGAATGTGATTGTTATTGGGGCTTGTTTAAA
AAATCAATACACAAACTTGGTATATTTCTTATCGAATCACAACATTTAAT
CCTATTTattaaaacagttttttaatCACAGATCAAATGATCAAATAACC
TCTGCATTTTGAGTTCTAGGGTGACTTTGGttttaagtctgaaaatcatt
gttataaaaactttgtttttcttatttcaGATAACTCAGTCAAAAGTCTC
CTCTCACCATagtaagtttcttttttttcaaattttcaagctCATGTATT
TTAAGAATAGTATAATGTAATATGCCACAAAAACTCTACTTTATATATTA
TTTATATTTCAGAATTAATAAATGGTTATGAAGTTGTTTACCCAAGAACA
AAATACTTTGATAATAACCAAAAGGTTATTACCCAAAACCAACATCAAGA
TACAAAACATAAGGCAAATGTAAATTTTCAAGGACTTGGAAGGAAATTCA
GgataaatttaaagaaaaattcaaatatcgTTTCTTCATCAAATACTCAT
CTTCATTTACTAAACGAAACTGGTAACGTTGTTGGGAAACATAGGGTTGA
AAATTGTTATTATAATGGCCAGTTGATGGGTGATGATCAAAGTTTTGTCT
CGCTAAGCCTTTGTAATGGAGTggtatgtttgatttttatacCTTTGTAT
TCTTCTTAATGATTTGTGGTGTCTCCATTACTAGAGTCGAAATTCCACAA
TTTATCTTTTCCATTTAAGTCCAAGAAATCTTTCTAGGAATCTCAAATTT
AGCATAATGATGTAAAACTTCGTATATGATCATCTTTTTAAGGTAGTTTC
TTTCTTAAATTGACTTGATTAGAGAAATATCTTTTAACTTGgcaatgttt
tatttttacagccattttcactgattttcttcattttcagcgAGGATTGA
TCAATACAGGTGATAGCAAGAGATACTATATCCAACCAATTCATAAAAGA
GGTGCTGTCAATATTGAAACTCAACCACACATCTTACGCCAAATATCGCC
AGAGCTCagcatcaaaaatttctctctcgaTCACAAAACAGATCTAATca
attttgatgatgataaaaagaaaggttagCGTTTGTTAAAGATTTCAAAT
GATGCATCTAGCAAATCGTTGGTTATTTCAAAACATAGTGGATTACAAAG
AGGTTAAAACAAATCGAAGTGGAATAAAACGTCTTttcaaacaatcttaa
aagtcGCAGGAACCCAAGAATGCTTTTTATTTCATACCCAATACTTTTTA
CTATCTTTAGATCCATTACTTTTCAAACGTTCGAAACGCAGTGAAGAAAC
GGGCGAAAAGACCATCGAAACATTGCTGACGTTAGATCGAAGTATGGCAC
AATTTTACGGTGTTGATGCAGCCAAGGAATATGCACTAACTGTTGCCAAT
GTGGTAAGTCGTCACACAATTTATTTATGGCTTGTTGAGTTTTTTTTAAG
AGGGAAGTTTAAAATTGCTAAAGACGTTAAAGCTTGCCAAGCTACTCAGG
TAGAATCACCGGTTAGCTCATAGATAGCCTAGCTGACTTGTTATAAAGAG
TATTAATTTTGTTCCACTTTTTTGAACCGTTAAGAttatttaaagtttaa
aaacttCAATTTAACTAAATCATCCATCTATATCGTTTAACATTAAAATG
CTTGAAGGAAGTTTCAATACTAAAAACAATGAACTAATTTTCTCGTCTCA
TTTCCTTACCAGGCACACAACATATTAAGAGATTCATCAATTGGACCTAA
TCCAATCAATTTGGTCATTTCCAAGATGGTTGTCATGACTACACCGTTGG
TAAGGAAGACACTACACGCTGGTTTTATTACATTCCAATAGACTTTGAAA
TAGTATCTAAAATACTTTTATTCAAATGATAGACAGGGCAGTATTTCTTT
TTGAAGGAATAAGCATAACTATGCAAAACTAAATATaccttttaatgaaa
ttaaatgACTGTGACTTGCTTTGCGATGTTTGttccttaaaggttttgtt
ttcaaataagagtgataccatttgcttactcatcaattttaattcataag
CTTTTTCGCATTGGATTGACAAGGGCGTGGAGCAGgcttggtcagaaaga
ggaaaaataaaacattttttgcttatatcagcataatataacaataggca
gacactgttctgatatgaaacgggaacacttatgtaaaaacaaaaNATTC
AAATGATAGACAGGGCAGTATTTCTTTTTGAAGGAATAAGCATAACTATG
CAAAACTAAATATaccttttaatgaaattaaatgACTGTGACTTGCTTTG
CGATGTTTGttccttaaaggttttgtttccaaataagagtgataccattt
gcttactcatcaattttaattcataagCTTTTTCGCATTGGATTGACAAG
GGCGTGGAGCAGgcttggtcagaaagaggaaaaataaaacattttttgct
tatatcagcataatataacaataggcagacactgttctgatatgaaacgg
gaacacttatgtaaaaacaaaacctttaatggtCGATTTTAGATGCCACT
TTATCTATTTGTAACTAATGCTTTGTTAAAGATCTCCTGCTCCGCCTGAC
ACGAAATACTTTGTCGATTTTTCTTCAGCCTGACTTAACCATCAACCACC
ATGCAGAAAACACGTTGCAATCATTCGGTCGCTGGGCAGAAAGAAGGAAT
GAGATCAATCAAGCAAACGATGACAAACCTGCTTACGATTTCGCTGTTCT
CTTGACCAAGTATGTTGTTTTTGATCAATTAAAACCATGAAATATTTATA
TATTGTATAATTCATGAGAAAATCAATTCTTTGTGAGAAGTGACACAAAT
TTTCCACGAAAAGTTTTCCCCAACTAAAATTGCATCCCAAAAAACTAAAG
ATTTACCCCTACTTTGAGTGCGAGTAGAAGCACTTGGTCTCAGCGTTTca
tttctttcgaaaaaaaaagtttacaaaacaCTTCATAAATCTCATTACAG
AAACACAAAATTACCCTTGTTCCTTTTCaagcacaatattttgattCAAC
TAATAATCTTTTGGGTAATTTATGGAGTTGAATTGGAGGTCCTTTAGATT
AACCCATGTCCTCTCGTccgtttgttcgtccgttcgttagtccgtttgtt
cgtctgttaccagcttttcttggAAGAATCTTTTTTGCcgtaaaaatcag
atttttgtattttgggaaatttccttctgtcatttttagggaaaatgagc
attctTTGCGATTGGCTCCaatattttttcagtttttttaattttgcatt
ttcttacTATTGTTGCCATTTTCTCCATTTTCGTATTACACTagccttca
ggtaggtccatttagAAGGTagtttgtttttcttatttccATTTTTCTCT
TCACAGGCAAGATATTTGCAAAGACCAAAACCAACCTTGCGAAAGTAC

Coding sequence (CDS) from alignment at sc0000066:399536..404983+

>TCONS_00006271 ID=TCONS_00006271|Name=TCONS_00006271|organism=Clytia hemisphaerica|type=CDS|length=7824bp|location=Sequence derived from alignment at sc0000066:399536..404983+ (Clytia hemisphaerica)
ATGTATTACACTCAAACCTTTCCCATCATTTTGCTACTCTGTAATGTAga
gATAACTCAGTCAAAAGTCTCCTCTCACCATaAATTAATAAATGGTTATG
AAGTTGTTTACCCAAGAACAAAATACTTTGATAATAACCAAAAGGTTATT
ACCCAAAACCAACATCAAGATACAAAACATAAGGCAAATGTAAATTTTCA
AGGACTTGGAAGGAAATTCAGgataaatttaaagaaaaattcaaatatcg
TTTCTTCATCAAATACTCATCTTCATTTACTAAACGAAACTGGTAACGTT
GTTGGGAAACATAGGGTTGAAAATTGTTATTATAATGGCCAGTTGATGGG
TGATGATCAAAGTTTTGTCTCGCTAAGCCTTTGTAATGGAGTgcgAGGAT
TGATCAATACAGGTGATAGCAAGAGATACTATATCCAACCAATTCATAAA
AGAGGTGCTGTCAATATTGAAACTCAACCACACATCTTACGCCAAATATC
GCCAGAGCTCagcatcaaaaatttctctctcgaTCACAAAACAGATCTAA
TcaattttgatgatgataaaaagaaagATCCATTACTTTTCAAACGTTCG
AAACGCAGTGAAGAAACGGGCGAAAAGACCATCGAAACATTGCTGACGTT
AGATCGAAGTATGGCACAATTTTACGGTGTTGATGCAGCCAAGGAATATG
CACTAACTGTTGCCAATGTGGCACACAACATATTAAGAGATTCATCAATT
GGACCTAATCCAATCAATTTGGTCATTTCCAAGATGGTTGTCATGACTAC
ACCGTTGCCTGACTTAACCATCAACCACCATGCAGAAAACACGTTGCAAT
CATTCGGTCGCTGGGCAGAAAGAAGGAATGAGATCAATCAAGCAAACGAT
GACAAACCTGCTTACGATTTCGCTGTTCTCTTGACCAAGCAAGATATTTG
CAAAGACCAAAACCAACCTTGCGAAAGTATGTATTACACTCAAACCTTTC
CCATCATTTTGCTACTCTGTAATGTAgagATAACTCAGTCAAAAGTCTCC
TCTCACCATaAATTAATAAATGGTTATGAAGTTGTTTACCCAAGAACAAA
ATACTTTGATAATAACCAAAAGGTTATTACCCAAAACCAACATCAAGATA
CAAAACATAAGGCAAATGTAAATTTTCAAGGACTTGGAAGGAAATTCAGg
ataaatttaaagaaaaattcaaatatcgTTTCTTCATCAAATACTCATCT
TCATTTACTAAACGAAACTGGTAACGTTGTTGGGAAACATAGGGTTGAAA
ATTGTTATTATAATGGCCAGTTGATGGGTGATGATCAAAGTTTTGTCTCG
CTAAGCCTTTGTAATGGAGTgcgAGGATTGATCAATACAGGTGATAGCAA
GAGATACTATATCCAACCAATTCATAAAAGAGGTGCTGTCAATATTGAAA
CTCAACCACACATCTTACGCCAAATATCGCCAGAGCTCagcatcaaaaat
ttctctctcgaTCACAAAACAGATCTAATcaattttgatgatgataaaaa
gaaagATCCATTACTTTTCAAACGTTCGAAACGCAGTGAAGAAACGGGCG
AAAAGACCATCGAAACATTGCTGACGTTAGATCGAAGTATGGCACAATTT
TACGGTGTTGATGCAGCCAAGGAATATGCACTAACTGTTGCCAATGTGGC
ACACAACATATTAAGAGATTCATCAATTGGACCTAATCCAATCAATTTGG
TCATTTCCAAGATGGTTGTCATGACTACACCGTTGCCTGACTTAACCATC
AACCACCATGCAGAAAACACGTTGCAATCATTCGGTCGCTGGGCAGAAAG
AAGGAATGAGATCAATCAAGCAAACGATGACAAACCTGCTTACGATTTCG
CTGTTCTCTTGACCAAGCAAGATATTTGCAAAGACCAAAACCAACCTTGC
GAAAGTATGTATTACACTCAAACCTTTCCCATCATTTTGCTACTCTGTAA
TGTAgagATAACTCAGTCAAAAGTCTCCTCTCACCATaAATTAATAAATG
GTTATGAAGTTGTTTACCCAAGAACAAAATACTTTGATAATAACCAAAAG
GTTATTACCCAAAACCAACATCAAGATACAAAACATAAGGCAAATGTAAA
TTTTCAAGGACTTGGAAGGAAATTCAGgataaatttaaagaaaaattcaa
atatcgTTTCTTCATCAAATACTCATCTTCATTTACTAAACGAAACTGGT
AACGTTGTTGGGAAACATAGGGTTGAAAATTGTTATTATAATGGCCAGTT
GATGGGTGATGATCAAAGTTTTGTCTCGCTAAGCCTTTGTAATGGAGTgc
gAGGATTGATCAATACAGGTGATAGCAAGAGATACTATATCCAACCAATT
CATAAAAGAGGTGCTGTCAATATTGAAACTCAACCACACATCTTACGCCA
AATATCGCCAGAGCTCagcatcaaaaatttctctctcgaTCACAAAACAG
ATCTAATcaattttgatgatgataaaaagaaagATCCATTACTTTTCAAA
CGTTCGAAACGCAGTGAAGAAACGGGCGAAAAGACCATCGAAACATTGCT
GACGTTAGATCGAAGTATGGCACAATTTTACGGTGTTGATGCAGCCAAGG
AATATGCACTAACTGTTGCCAATGTGGCACACAACATATTAAGAGATTCA
TCAATTGGACCTAATCCAATCAATTTGGTCATTTCCAAGATGGTTGTCAT
GACTACACCGTTGCCTGACTTAACCATCAACCACCATGCAGAAAACACGT
TGCAATCATTCGGTCGCTGGGCAGAAAGAAGGAATGAGATCAATCAAGCA
AACGATGACAAACCTGCTTACGATTTCGCTGTTCTCTTGACCAAGCAAGA
TATTTGCAAAGACCAAAACCAACCTTGCGAAAGTATGTATTACACTCAAA
CCTTTCCCATCATTTTGCTACTCTGTAATGTAgagATAACTCAGTCAAAA
GTCTCCTCTCACCATaAATTAATAAATGGTTATGAAGTTGTTTACCCAAG
AACAAAATACTTTGATAATAACCAAAAGGTTATTACCCAAAACCAACATC
AAGATACAAAACATAAGGCAAATGTAAATTTTCAAGGACTTGGAAGGAAA
TTCAGgataaatttaaagaaaaattcaaatatcgTTTCTTCATCAAATAC
TCATCTTCATTTACTAAACGAAACTGGTAACGTTGTTGGGAAACATAGGG
TTGAAAATTGTTATTATAATGGCCAGTTGATGGGTGATGATCAAAGTTTT
GTCTCGCTAAGCCTTTGTAATGGAGTgcgAGGATTGATCAATACAGGTGA
TAGCAAGAGATACTATATCCAACCAATTCATAAAAGAGGTGCTGTCAATA
TTGAAACTCAACCACACATCTTACGCCAAATATCGCCAGAGCTCagcatc
aaaaatttctctctcgaTCACAAAACAGATCTAATcaattttgatgatga
taaaaagaaagATCCATTACTTTTCAAACGTTCGAAACGCAGTGAAGAAA
CGGGCGAAAAGACCATCGAAACATTGCTGACGTTAGATCGAAGTATGGCA
CAATTTTACGGTGTTGATGCAGCCAAGGAATATGCACTAACTGTTGCCAA
TGTGGCACACAACATATTAAGAGATTCATCAATTGGACCTAATCCAATCA
ATTTGGTCATTTCCAAGATGGTTGTCATGACTACACCGTTGCCTGACTTA
ACCATCAACCACCATGCAGAAAACACGTTGCAATCATTCGGTCGCTGGGC
AGAAAGAAGGAATGAGATCAATCAAGCAAACGATGACAAACCTGCTTACG
ATTTCGCTGTTCTCTTGACCAAGCAAGATATTTGCAAAGACCAAAACCAA
CCTTGCGAAAGTATGTATTACACTCAAACCTTTCCCATCATTTTGCTACT
CTGTAATGTAgagATAACTCAGTCAAAAGTCTCCTCTCACCATaAATTAA
TAAATGGTTATGAAGTTGTTTACCCAAGAACAAAATACTTTGATAATAAC
CAAAAGGTTATTACCCAAAACCAACATCAAGATACAAAACATAAGGCAAA
TGTAAATTTTCAAGGACTTGGAAGGAAATTCAGgataaatttaaagaaaa
attcaaatatcgTTTCTTCATCAAATACTCATCTTCATTTACTAAACGAA
ACTGGTAACGTTGTTGGGAAACATAGGGTTGAAAATTGTTATTATAATGG
CCAGTTGATGGGTGATGATCAAAGTTTTGTCTCGCTAAGCCTTTGTAATG
GAGTgcgAGGATTGATCAATACAGGTGATAGCAAGAGATACTATATCCAA
CCAATTCATAAAAGAGGTGCTGTCAATATTGAAACTCAACCACACATCTT
ACGCCAAATATCGCCAGAGCTCagcatcaaaaatttctctctcgaTCACA
AAACAGATCTAATcaattttgatgatgataaaaagaaagATCCATTACTT
TTCAAACGTTCGAAACGCAGTGAAGAAACGGGCGAAAAGACCATCGAAAC
ATTGCTGACGTTAGATCGAAGTATGGCACAATTTTACGGTGTTGATGCAG
CCAAGGAATATGCACTAACTGTTGCCAATGTGGCACACAACATATTAAGA
GATTCATCAATTGGACCTAATCCAATCAATTTGGTCATTTCCAAGATGGT
TGTCATGACTACACCGTTGCCTGACTTAACCATCAACCACCATGCAGAAA
ACACGTTGCAATCATTCGGTCGCTGGGCAGAAAGAAGGAATGAGATCAAT
CAAGCAAACGATGACAAACCTGCTTACGATTTCGCTGTTCTCTTGACCAA
GCAAGATATTTGCAAAGACCAAAACCAACCTTGCGAAAGTATGTATTACA
CTCAAACCTTTCCCATCATTTTGCTACTCTGTAATGTAgagATAACTCAG
TCAAAAGTCTCCTCTCACCATaAATTAATAAATGGTTATGAAGTTGTTTA
CCCAAGAACAAAATACTTTGATAATAACCAAAAGGTTATTACCCAAAACC
AACATCAAGATACAAAACATAAGGCAAATGTAAATTTTCAAGGACTTGGA
AGGAAATTCAGgataaatttaaagaaaaattcaaatatcgTTTCTTCATC
AAATACTCATCTTCATTTACTAAACGAAACTGGTAACGTTGTTGGGAAAC
ATAGGGTTGAAAATTGTTATTATAATGGCCAGTTGATGGGTGATGATCAA
AGTTTTGTCTCGCTAAGCCTTTGTAATGGAGTgcgAGGATTGATCAATAC
AGGTGATAGCAAGAGATACTATATCCAACCAATTCATAAAAGAGGTGCTG
TCAATATTGAAACTCAACCACACATCTTACGCCAAATATCGCCAGAGCTC
agcatcaaaaatttctctctcgaTCACAAAACAGATCTAATcaattttga
tgatgataaaaagaaagATCCATTACTTTTCAAACGTTCGAAACGCAGTG
AAGAAACGGGCGAAAAGACCATCGAAACATTGCTGACGTTAGATCGAAGT
ATGGCACAATTTTACGGTGTTGATGCAGCCAAGGAATATGCACTAACTGT
TGCCAATGTGGCACACAACATATTAAGAGATTCATCAATTGGACCTAATC
CAATCAATTTGGTCATTTCCAAGATGGTTGTCATGACTACACCGTTGCCT
GACTTAACCATCAACCACCATGCAGAAAACACGTTGCAATCATTCGGTCG
CTGGGCAGAAAGAAGGAATGAGATCAATCAAGCAAACGATGACAAACCTG
CTTACGATTTCGCTGTTCTCTTGACCAAGCAAGATATTTGCAAAGACCAA
AACCAACCTTGCGAAAGTATGTATTACACTCAAACCTTTCCCATCATTTT
GCTACTCTGTAATGTAgagATAACTCAGTCAAAAGTCTCCTCTCACCATa
AATTAATAAATGGTTATGAAGTTGTTTACCCAAGAACAAAATACTTTGAT
AATAACCAAAAGGTTATTACCCAAAACCAACATCAAGATACAAAACATAA
GGCAAATGTAAATTTTCAAGGACTTGGAAGGAAATTCAGgataaatttaa
agaaaaattcaaatatcgTTTCTTCATCAAATACTCATCTTCATTTACTA
AACGAAACTGGTAACGTTGTTGGGAAACATAGGGTTGAAAATTGTTATTA
TAATGGCCAGTTGATGGGTGATGATCAAAGTTTTGTCTCGCTAAGCCTTT
GTAATGGAGTgcgAGGATTGATCAATACAGGTGATAGCAAGAGATACTAT
ATCCAACCAATTCATAAAAGAGGTGCTGTCAATATTGAAACTCAACCACA
CATCTTACGCCAAATATCGCCAGAGCTCagcatcaaaaatttctctctcg
aTCACAAAACAGATCTAATcaattttgatgatgataaaaagaaagATCCA
TTACTTTTCAAACGTTCGAAACGCAGTGAAGAAACGGGCGAAAAGACCAT
CGAAACATTGCTGACGTTAGATCGAAGTATGGCACAATTTTACGGTGTTG
ATGCAGCCAAGGAATATGCACTAACTGTTGCCAATGTGGCACACAACATA
TTAAGAGATTCATCAATTGGACCTAATCCAATCAATTTGGTCATTTCCAA
GATGGTTGTCATGACTACACCGTTGCCTGACTTAACCATCAACCACCATG
CAGAAAACACGTTGCAATCATTCGGTCGCTGGGCAGAAAGAAGGAATGAG
ATCAATCAAGCAAACGATGACAAACCTGCTTACGATTTCGCTGTTCTCTT
GACCAAGCAAGATATTTGCAAAGACCAAAACCAACCTTGCGAAAGTATGT
ATTACACTCAAACCTTTCCCATCATTTTGCTACTCTGTAATGTAgagATA
ACTCAGTCAAAAGTCTCCTCTCACCATaAATTAATAAATGGTTATGAAGT
TGTTTACCCAAGAACAAAATACTTTGATAATAACCAAAAGGTTATTACCC
AAAACCAACATCAAGATACAAAACATAAGGCAAATGTAAATTTTCAAGGA
CTTGGAAGGAAATTCAGgataaatttaaagaaaaattcaaatatcgTTTC
TTCATCAAATACTCATCTTCATTTACTAAACGAAACTGGTAACGTTGTTG
GGAAACATAGGGTTGAAAATTGTTATTATAATGGCCAGTTGATGGGTGAT
GATCAAAGTTTTGTCTCGCTAAGCCTTTGTAATGGAGTgcgAGGATTGAT
CAATACAGGTGATAGCAAGAGATACTATATCCAACCAATTCATAAAAGAG
GTGCTGTCAATATTGAAACTCAACCACACATCTTACGCCAAATATCGCCA
GAGCTCagcatcaaaaatttctctctcgaTCACAAAACAGATCTAATcaa
ttttgatgatgataaaaagaaagATCCATTACTTTTCAAACGTTCGAAAC
GCAGTGAAGAAACGGGCGAAAAGACCATCGAAACATTGCTGACGTTAGAT
CGAAGTATGGCACAATTTTACGGTGTTGATGCAGCCAAGGAATATGCACT
AACTGTTGCCAATGTGGCACACAACATATTAAGAGATTCATCAATTGGAC
CTAATCCAATCAATTTGGTCATTTCCAAGATGGTTGTCATGACTACACCG
TTGCCTGACTTAACCATCAACCACCATGCAGAAAACACGTTGCAATCATT
CGGTCGCTGGGCAGAAAGAAGGAATGAGATCAATCAAGCAAACGATGACA
AACCTGCTTACGATTTCGCTGTTCTCTTGACCAAGCAAGATATTTGCAAA
GACCAAAACCAACCTTGCGAAAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003581	XLOC_003581	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006271-protein	TCONS_00006271-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000066	supercontig	sc0000066:399536..404983 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.19288	1.12509	1.33012	1.12781	0	0	0.956548	1.08404	0	0.572231	0.515749	0.768388	2.00533	1.56051	1.86779	4.48609	1.32283	2.25977	0.306615	0.32085	1.11551	1.22422	1.25716	0.612289	0.929046	1.10554	0.268471	0	0.478094	0.531384

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002870	Peptidase_M12B_N
IPR024079	MetalloPept_cat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0008237	metallopeptidase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008237	metallopeptidase activity

Blast

[Close]

BLAST of TCONS_00006271 vs. Swiss-Prot (Human)
Match: ATS7 (A disintegrin and metalloproteinase with thrombospondin motifs 7 OS=Homo sapiens GN=ADAMTS7 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.891e-27
Identity = 82/289 (28.37%), Postives = 138/289 (47.75%), Query Frame = 1

Query:  331 FQGLGRKFRINLKKNSNIVSSSNTHLHLLNETGNVVGKHRVE------NCYYNGQLMGDD--QSFVSLSLCNGVRGLINTGDSKRYYIQPIHKRGAVNIETQPHIL--RQISPELSIKNFSLDHKTDLINFXXXXXXXPLLFKRSKRSEE-----------------TGEKTIETLLTLDRSMAQFYGVDAAKEYALTVANVAHNILRDSSIGPNPINLVISKMVVMTTPLPDLTINHHAENTLQSFGRWAERRNEINQANDDKPA-YDFAVLLTKQDICKDQNQPCES 1113
             Q  GR+ R NL  N ++++        ++ET    G  R         C+  G++   +      ++S C+G++G+    + + Y+I+P+    A     QPH++  RQ    L+ +  S    T  +         P L  R +R E+                 + EK +ETL+  D  M +++G    + Y LT+ N+   +  D SIG NPI++ I ++V++     DL I HHA+NTL+SF +W   +  IN   D  P  +D A+LLT++D+C   N+PCE+
Sbjct:   84 LQYRGRELRFNLTANQHLLAPG-----FVSETRRRGGLGRAHIRAHTPACHLLGEVQDPELEGGLAAISACDGLKGVFQLSN-EDYFIEPLDSAPARPGHAQPHVVYKRQAPERLAQRGDSSAPSTCGVQVY------PELESRRERWEQRQQWRRPRLRRLHQRSVSKEKWVETLVVADAKMVEYHGQPQVESYVLTIMNMVAGLFHDPSIG-NPIHITIVRLVLLEDEEEDLKITHHADNTLKSFCKW---QKSINMKGDAHPLHHDTAILLTRKDLCAAMNRPCET 356

The following BLAST results are available for this feature:

BLAST of TCONS_00006271 vs. Swiss-Prot (Human)

BLAST of TCONS_00006271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ATS7	2.891e-27	28.37	A disintegrin and metalloproteinase with thrombosp...	[more]

You are here

TCONS_00006271 (transcript) - C. hemisphaerica