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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064115 ID=TCONS_00064115|Name=TCONS_00064115|organism=Clytia hemisphaerica|type=transcript|length=1619bpRun BLAST on NCBI transcript from alignment at scaffold_408:13215..35112- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064115 ID=TCONS_00064115|Name=TCONS_00064115|organism=Clytia hemisphaerica|type=transcript|length=21898bp|location=Sequence derived from alignment at scaffold_408:13215..35112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064115 vs. Swiss-Prot (Human)
Match: FA47E (Protein FAM47E OS=Homo sapiens GN=FAM47E PE=2 SV=3) HSP 1 Score: 126.716 bits (317), Expect = 7.788e-32 Identity = 109/380 (28.68%), Postives = 177/380 (46.58%), Query Frame = 3
Query: 183 KKPTLLTS-SWTFVKDGMDDFRNGIIPKLDSSIVLKGSKGIQPSIFGSSSSVNKFQNQELLKHLSKKEAAYTRTLPSQQRKQKKVNEVEQKLLAHPLALYPHIEDSVPPDLFEEIVDLLDPSMTLANDMSDQGSESSVDGLSNLNSNEQNLKEININAKAQAT-----PS---SVDNSYSNAFRRLPNKKTLNNEEDERNSRKKGKQTQLTKIETVTKEFCGWIRDLGGDTNNIEEATIKNLFATGYESKPALSVPVHVVELTSVPAEL-------RLEDKEDRKEENILPAIKKKAD-YTPSWVKVKYGAWYLDPKTWKAREADKPLRDPREINEKQMXXXXXXXXXXXXXXXMLHGAQAFKEFVESKGTRKPEFLENV 1271
K PT L S F + G+DDFR G P + +G P I+ + + + Q L K+ ++ P+QQ ++ + +VE L HPLALY ++E+++P +L +++++LDP L D + + +KE K +T PS SV N+ + P+K L +E R + ++I+E I F YE+KP+ +H ++L VP EL +L++ E ++ ++K + Y P WVK++YGAWYL+PK WK + D+PL DP ++ Q + KK+ + ++ L LHG AFK+F+ S+G R P FLEN+
Sbjct: 35 KFPTSLHSRQLVFPRKGLDDFRKGC-PPCTGLVTQVPVEGFLPQIYHRAPQLAPKKRQ---IKLLKEADVLSKLSPAQQARKAFLEDVEAHLTPHPLALYLNLEEAMPIELLSKVLEVLDPDRKLE------------DTWAYCQDTRKGMKEPTKLLKKHSTQVYLGPSKKTSVSNAGQWLYEEKPHKMDLLHENGPRPGLHE------------------------NGISDIDEEFILKQFDIDYETKPSHDA-LHTMKLNQVPLELKRSVGLSKLQETEFFQKLGYERKLQKPQNPYKPKWVKMRYGAWYLNPKLWKKQRVDEPLVDPEVSHKAQEENFKKELQEQEELLADLHGTVAFKDFILSRGYRTPRFLENM 373 The following BLAST results are available for this feature:
BLAST of TCONS_00064115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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