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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000162 ID=TCONS_00000162|Name=TCONS_00000162|organism=Clytia hemisphaerica|type=transcript|length=4887bpRun BLAST on NCBI protein sequence of TCONS_00000162-protein >TCONS_00000162-protein ID=TCONS_00000162-protein|Name=TCONS_00000162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1365bp MFNHAQTISKIAFLHAKYENIVQSFLPRHSGLVVESNHPFDPKIFINSNWRun BLAST on NCBI transcript from alignment at sc0000001:471270..481845- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000162 ID=TCONS_00000162|Name=TCONS_00000162|organism=Clytia hemisphaerica|type=transcript|length=10576bp|location=Sequence derived from alignment at sc0000001:471270..481845- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:471270..481845- >TCONS_00000162 ID=TCONS_00000162|Name=TCONS_00000162|organism=Clytia hemisphaerica|type=CDS|length=4098bp|location=Sequence derived from alignment at sc0000001:471270..481845- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000162 vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2) HSP 1 Score: 802.357 bits (2071), Expect = 0.000e+0 Identity = 463/968 (47.83%), Postives = 642/968 (66.32%), Query Frame = 1
Query: 1420 EEFLQKIFQKWGTLCASHPWKVILGSLFFILVCSLGLLKFTVITNPVELWSSPTTQARMEKSYYDEKFTPFYRTEQVIITSTVKNNTEEFYPYQVSSPTNFSGIMTKEMLFRVLDLQLDLMNLTAEYNGETVALNDICYQPLYPDNKDCAVMSVLQYWQ-----LDAKKLNMCITNMDSDCSAGFGSRAADWHDQFSGCTKNPTAMELEPHMKLPCMGKFGGPVTPKLALGGFEGDDYSTATTLIITFVVNNH-RDESKNKKAEAWEKVFIDYLKKWEQDPELSANLTIAYTSERSIQDEITRASESDVLTIAISYCLMFLYIAVGLGQFRSLSRMLIDAKVTXXXXXXXXXXXXXXXXXXXCSYFGTPATLIIIEVIPFLVLAVGVDNIFILVQALQRDIRLPAENTSEQVGRVVGVVGPSMLLSSLSESVAFGFGALSTMPXXXXXXXXXXXXXXXXXILQMTMLVAVVTLDKKRQDNSRYDILCCASGDKNAPNSEECCEGGVLHFIVKKIYAPTLMLYPVRVTVILVFSIYLGISACFITNLSLGISQTIALPRDSFLMNYFGNLSTYLKTGAPVYFVVKDGFDYSKVENQXXXXXXXXXXXXXXXXEVFFSSLNPNYTSVALPASSWLDDYFSWLDPDVKCCRLRNGSTPLNMNFCPAT--DPLEWRNCTSCLPKN-ESAQRPRPAEFRKFLQQYLKDNPSKDCSKGGHAAYGGAVKLNAPVDGEYSVDASYFMTYHTVSTTSDEFTHSMKYARELASNMTERIN-----HDVFAYSVFYVFYEQYLTIVSDTWKDLLICASGVFAVTFLLMGFNFGLAFCIIVTVAMIVVDLMGLMYLWNISLNAVSLVNLMMAIGISVEFCAHIGRAFSTSPYSSRVKRAEDALGTVGSSVLSGITITKFVGVFVLWFSKSELFEIYYFRMYMGIIIMGFLHGLVFLPVFLSYVGPA-----SRATEEDVK 4266
E L+++F +WG+ C +P VI SL FI CS GL+ V TNPV+LWS+P++QAR+EK Y+D+ F PF+RTEQ+II + + + + PY + F + ++L +VLDLQ+ + N+TA Y+ ETV L DIC PL P N +C ++SVL Y+Q LD KK + AD+H F C + P ++ + PC+G FGGPV P L LGG++ +Y+ AT L+ITF VNN+ D K ++A+AWEK FI+++K ++ + NLTI++T+ERSI+DE+ R S+SDV T+ ISY +MFLYI++ LG +S R+L+D+KV++GI G+LIVL SVA SLG SY G P TLI+IEVIPFLVLAVGVDNIFILVQA QRD RL E +Q+GRV+G V PSM LSS SE+VAF GALS MPAVHTF++FA AVF +F+LQ+T V+++ LD KRQ+ +R DI CC G ++ S + E + F K Y+P L+ +R VI +F L S + + +G+ Q++++P DS++++YF ++S YL G PVYFV+++G DY+ + QN++CG GCN++SL+ ++F ++ NYT + SSW+DDYF W+ P CCR+ N + FC A+ DP C C P E QRP+ +F +FL +L DNP+ C KGGHAAY AV N + V A+YFMTYHTV TS +F ++K AR +ASN+TE + + VF YSVFYVFYEQYLTI+ DT +L + +F VT +L+G A + T+AM++V++ G+M+LW ISLNAVSLVNL+M+ GISVEFC+HI RAF+ S SRV+RAE+AL +GSSV SGIT+TKF G+ VL F+KS++F+I+YFRMY+ ++++G HGL+FLPV LSY+GP+ S ATEE K
Sbjct: 332 EGCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDK-HIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFV-------------YADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYK-----NPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDG-TSVQASESCLFRFF-KNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDN----ITDQFCNASVVDP----ACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAV--NILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKSCATEERYK 1268 HSP 2 Score: 121.324 bits (303), Expect = 2.470e-27 Identity = 75/223 (33.63%), Postives = 116/223 (52.02%), Query Frame = 1
Query: 466 SQVLAQTNIRKDGYCVMYGQ--MAPGTEIVN-PYNGPAKNFSEESYKILAETCPHLAHGINETVGCCGIGQLKSLEKNLKTAATLFSRCPSCSKNFYNMWCDFTCSPNQSEFMDYT----------------YGMATYYVSDKYANDLYGSCKDVTFPGSNGKVMDLMCGTTAKLCTTEKFLKFVGTPGNG-APFNI--MFNIGLNVSGVENHDAHMVGCNET 1068
+QV +Q+ CV YG+ +A G + N Y+GP K ++ Y ++ E CP G N ++ CC + QL++L+ NL+ SRCPSC N N++C+ TCSP QS+F++ T YYV +AN +Y +C+DV P SN K + L+CG A C +++++ NG APF I +F+ V G+E + GC+E+
Sbjct: 18 AQVFSQS-------CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFG-NVSL-CCDVRQLQTLKDNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACNATNWIEYMFNKDNGQAPFTITPVFS-DFPVHGMEPMNNATKGCDES 230 The following BLAST results are available for this feature:
BLAST of TCONS_00000162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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