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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065595 ID=TCONS_00065595|Name=TCONS_00065595|organism=Clytia hemisphaerica|type=transcript|length=2544bpRun BLAST on NCBI protein sequence of TCONS_00065595-protein >TCONS_00065595-protein ID=TCONS_00065595-protein|Name=TCONS_00065595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp FRVKVIMRLYLAIAPLVITTLVQLVSSQDVFNDFSVCGKTKDSRFLDQISRun BLAST on NCBI transcript from alignment at scaffold_440:214364..236990- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065595 ID=TCONS_00065595|Name=TCONS_00065595|organism=Clytia hemisphaerica|type=transcript|length=22627bp|location=Sequence derived from alignment at scaffold_440:214364..236990- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_440:214364..236990- >TCONS_00065595 ID=TCONS_00065595|Name=TCONS_00065595|organism=Clytia hemisphaerica|type=CDS|length=28980bp|location=Sequence derived from alignment at scaffold_440:214364..236990- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065595 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 310.842 bits (795), Expect = 2.448e-90 Identity = 199/557 (35.73%), Postives = 301/557 (54.04%), Query Frame = 3
Query: 153 RIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC----QIRAGQQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASGG-SQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAA-ARGK-DSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWI--QTNLASAGVQXXXXXXXXXXXXXXXXXXXXXXXXXXSDAFNDFSV-------------CGKTKNTRFLDSISRIVGGVNAAPGDLPWQAAMRRTDSGKPFCGATLISKKWAISAAHC-------QIRAGQQIVLGAHNFRLGAEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTRSG-GSQPNILQEAEVKVVSRQDCNSRYGNGIDQTMLCAA-ARGK-DSCQGDSGGPLVVDLKDLNGGDQFYLAGVVSFGIGCANPSYPGVYSNVASLRNWIQTNLAS 1727
RIVGG+ A+PG+ PWQA++R + FCGA +I+ +W +SAAHC Q +GA + GSE S V + + H YN T D+A++EL+ + F ++P C+ ++ +ISGWG +P +LQ+A V+++ +C S YG+ + M+CA GK DSCQGDSGGPLV + + +G RFFLAG+VS+GIGCA PGVY+ V LR+WI T AS + P P T P + +T + + S CG ++ +R+VGG AA G++PWQ +++ + + FCGAT++ +W +SAAHC Q+RA LG + LG S +RR + H YN + D+A++EL+ + F+++++P C+ + ++ +ISGWG T+ G ++P +LQ+A V ++ ++ C+ Y + M+CA GK DSCQGDSGGPL + FYLAG+VS+GIGCA PGVY+ + L+ WI ++S
Sbjct: 202 RIVGGMEASPGEFPWQASLRENK--EHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGA-TYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLYGHSLTDRMVCAGYLDGKVDSCQGDSGGPLVCE--EPSG--RFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEATTKASMPLAPTMAPAPAAPSTAWPTSPESPVVSTPTKSMQALSTVPLDWVTVPKLQECGARPA---MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASL-LGLGGSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLTDRMICAGFLEGKVDSCQGDSGGPLACE----EAPGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSS 737 HSP 2 Score: 167.548 bits (423), Expect = 1.999e-42 Identity = 92/251 (36.65%), Postives = 145/251 (57.77%), Query Frame = 3
Query: 138 LDQISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHC-------QIRAGQQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASG-GSQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAA-ARGK-DSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNLAS 860
+++ +R+VGG AA G++PWQ +++ + FCGAT++ +W +SAAHC Q+RA LG + LG GS +RR + H YN + D+A++EL+ + FN++++P C+ + ++ +ISGWG T G ++P +LQ+A V ++ + C+ Y + M+CA GK DSCQGDSGGPL + F+LAG+VS+GIGCA PGVY+ + L+ WI ++S
Sbjct: 498 MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAH----LGTASL-LGLGGSPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLTDRMICAGFLEGKVDSCQGDSGGPLACE----EAPGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSS 737 HSP 3 Score: 163.31 bits (412), Expect = 4.062e-41 Identity = 94/241 (39.00%), Postives = 136/241 (56.43%), Query Frame = 3
Query: 147 ISRIVGGVNAAPGDLPWQAAMRSRNSGKPFCGATLISKKWAISAAHCQIRAG---QQIVLGAHNFRLGSEGSRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFNEFVKPACVLDSSKQLAAETPVVISGWGTTASGGSQPNILQEAEVKVVSNQVCNSRYGNGIDQTMLCAA--ARGKDSCQGDSGGPLVVDLKDSNGGDRFFLAGVVSFGIGCANPNYPGVYSNVASLRNWIQTNL 854
++RIVGG A G+ PWQ ++ R + CGA L++++W +SAAHC G Q F G+EG Q+ V R H YN T+ D+AL+EL+ V + V+P C+ + + + T VI+GWG+ GGS LQ+A V+++S Q C Y I MLCA G DSC GD+GGPL ++ +G R+ L GV S+G GC P++PGVY+ VA++R WI ++
Sbjct: 824 LTRIVGGSAAGRGEWPWQVSLWLRRR-EHRCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFYPVQISSRMLCAGFPQGGVDSCSGDAGGPLAC--REPSG--RWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIGQHI 1057 HSP 4 Score: 160.229 bits (404), Expect = 3.966e-40 Identity = 95/244 (38.93%), Postives = 136/244 (55.74%), Query Frame = 3
Query: 1011 SISRIVGGVNAAPGDLPWQAAM--RRTDSGKPFCGATLISKKWAISAAHCQIRAG---QQIVLGAHNFRLGAEASRQIRTVRRAINHQGYNDRTMTNDIALVELSQEVEFDEFVKPACVLDSSKQLAAETPVVISGWGTTRSGGSQPNILQEAEVKVVSRQDCNSRYGNGIDQTMLCAA--ARGKDSCQGDSGGPLVVDLKDLNGGDQFYLAGVVSFGIGCANPSYPGVYSNVASLRNWIQTNL 1721
+++RIVGG A G+ PWQ ++ RR + CGA L++++W +SAAHC G Q F GAE Q+ V R H YN T+ D+AL+EL+ V V+P C+ + + + T VI+GWG+ R GGS LQ+A V+++S Q C Y I MLCA G DSC GD+GGPL ++ +G ++ L GV S+G GC P +PGVY+ VA++R WI ++
Sbjct: 823 ALTRIVGGSAAGRGEWPWQVSLWLRRREH---RCGAVLVAERWLLSAAHCFDVYGDPKQWAAFLGTPFLSGAEG--QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFYPVQISSRMLCAGFPQGGVDSCSGDAGGPLAC--REPSG--RWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWIGQHI 1057 The following BLAST results are available for this feature:
BLAST of TCONS_00065595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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