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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065612 ID=TCONS_00065612|Name=TCONS_00065612|organism=Clytia hemisphaerica|type=transcript|length=4570bpRun BLAST on NCBI protein sequence of TCONS_00065612-protein >TCONS_00065612-protein ID=TCONS_00065612-protein|Name=TCONS_00065612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=843bp MKAMEAEETQHGHSSWNTNGMFARCLREKRATVYDDTNVDDVIEGKRNFCRun BLAST on NCBI transcript from alignment at scaffold_440:498949..516417- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065612 ID=TCONS_00065612|Name=TCONS_00065612|organism=Clytia hemisphaerica|type=transcript|length=17469bp|location=Sequence derived from alignment at scaffold_440:498949..516417- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_440:498949..516417- >TCONS_00065612 ID=TCONS_00065612|Name=TCONS_00065612|organism=Clytia hemisphaerica|type=CDS|length=53172bp|location=Sequence derived from alignment at scaffold_440:498949..516417- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065612 vs. Swiss-Prot (Human)
Match: KDM2A (Lysine-specific demethylase 2A OS=Homo sapiens GN=KDM2A PE=1 SV=3) HSP 1 Score: 401.364 bits (1030), Expect = 1.441e-117 Identity = 228/517 (44.10%), Postives = 315/517 (60.93%), Query Frame = 3
Query: 696 FARCLREKRATVYDDTNV-DDVIEGKRNFCLEEKLQDDKFTTAKQCLLEMEGKDFNLKYIQEHGFNTPMLFKSKDGLNITVPNPDLFSVNDVKSYVGARRIIDVFDCDTHSPEKMTLHQFVRYYMS--QEKEKLLNVTSLEVSQTGLARLVDCPTTITEDLDWVPLVWPKNLIKGQKDATNAVENMKYPKVRKYCLMSVGGCYTDFHIDFGGTSVWYHVLKGSKVFWLIPPTDENLEIYERWVLSERQQDVFFGDVVEDCFRIQLVAGDTFMIPTGWIHSVYTPEDSLVFGGNYLHSFNIPMQLRIHDIEETTHVPKHLRFPFFAEIHWYLVKMYVEILERDMDERRK---------LEFEGDDSAN-EEEDDEKDVFKL----------INDEMN----------------KKEEDTEEKSQHSPKSPKPTKW--QC-------VHLTVFELEGLKTLCERLRSWSHAKINYPKDFGDDSMELLDRLEEMLQYHEEDDQILACSGNNIFKQYAMDK 2102
+++ LR Y+D + DD IEGKR F LEEKL +K+ + MEGKDFN++YIQ G P++FK+ DGL I +P+PD F+VNDVK VG+RR++DV D +T +MT+ Q+ RYY + +E+EKL NV SLE S T L +V P+T+ + +DWV +WP++L + Q ++TNA+ M+YPKV+KYCLMSV GCYTDFH+DFGGTSVWYH+ +G KVFWLIPPT NLE+YE W+LS +Q D+F GD V DC RI+L G TF+IP+GWIH+VYTP D+LVFGGN+LHSFNIPMQL+I++IE+ T VP R+PF+ E+ WY+++ YV + ++ LE G +S N +EE +++ +L + + +N KK + S S S W QC VHLT FELEGL+ L ++L S K P D+ + D ++ +L+ D LA +G I + DK
Sbjct: 10 YSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNA--NFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPD-FTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTV-DFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSSRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLAGDSSSDCSRGSHNGQVWDPQCAPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIAD-VKILLEELANSDPKLALTGVPIVQWPKRDK 521 HSP 2 Score: 133.65 bits (335), Expect = 3.516e-31 Identity = 76/235 (32.34%), Postives = 126/235 (53.62%), Query Frame = 2
Query: 3392 LKRDLWIHVFSYLKESEVNLCMLVCKAWNQWCLDHKLWPTLRVTN-KILNPSILKGIVRRQPTELVLSSTRVSAKQVEWLLNRLPRLGSLDLSLNTAAAVSSLLHVKCPPLNNLSVAWCDAVFDRFLSQVLAPLRNGQTEIHGRSRLHFLEYLNLTGCDIAYETMRNVFTLLPSLRELNVSFCAKVKDNDLKIIKDGQNVNKSTLKKIICTGCPLVTESMVSEIKVLPNMPEIVL 4093
++R++W+ VF YL E+ CM VCK W +WC D +LW + ++ K + P L GI++RQP L LS T +S KQ+ WL+NRLP L L L+ + +AVS+L CP L L + W + D + +L P + + RS+L + L G DI T+R + +P L L++S C+ + D ++ + + +L ++ GC +T+ + ++ + N+ I L
Sbjct: 893 MQREVWMSVFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQ-DNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDL 1126 HSP 3 Score: 87.8113 bits (216), Expect = 3.985e-17 Identity = 65/241 (26.97%), Postives = 114/241 (47.30%), Query Frame = 3
Query: 2499 QCKGCSRENCNKCRFCLDMKKNGGEGKLRQSCAMRFCENPQLPSYVVCNVCDSREDGE-------LLMECHVCSEVVHPACIERXXXXXXXXXXXXXXXXXXXNSWECPKCCQADE---------EETTIFSVNAVEKIVNSIKKENRNVLQPKGGKPAMSKVLLNKIQNGGKGRKKSFDLGS----DGSDDEPLAKKRNRSKAGSE----NESDDEPLIKKKIKKVQENVTPKPVLNIVL 3149
+CK C + C C +C DMKK GG G+++QSC +R C P+LP V C++C + E LMEC +C+E+VHP C++ + +++++ N WECPKC Q D EE+ +V A K++ ++ + + P +M +++ + + G + S G S DE +++ +E E ++ P KK++ +V++ L + L
Sbjct: 573 KCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQ--------MDGEGLLNEELPNCWECPKCYQEDSSEKAQKRKMEESDEEAVQA--KVLRPLRSCDEPLTPPPHSPTSMLQLIHDPVSPRGMVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTL 803 The following BLAST results are available for this feature:
BLAST of TCONS_00065612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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