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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007097 ID=TCONS_00007097|Name=TCONS_00007097|organism=Clytia hemisphaerica|type=transcript|length=5040bpRun BLAST on NCBI protein sequence of TCONS_00007097-protein >TCONS_00007097-protein ID=TCONS_00007097-protein|Name=TCONS_00007097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1218bp MEEHNKEEKKQISDESPTTTITNDTSKSQQEKIDSTQKEVLEPCSSENMDRun BLAST on NCBI transcript from alignment at sc0000073:720444..733309- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007097 ID=TCONS_00007097|Name=TCONS_00007097|organism=Clytia hemisphaerica|type=transcript|length=12866bp|location=Sequence derived from alignment at sc0000073:720444..733309- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:720444..733309- >TCONS_00007097 ID=TCONS_00007097|Name=TCONS_00007097|organism=Clytia hemisphaerica|type=CDS|length=47541bp|location=Sequence derived from alignment at sc0000073:720444..733309- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007097 vs. Swiss-Prot (Human)
Match: WAP53 (Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 5.658e-95 Identity = 153/354 (43.22%), Postives = 227/354 (64.12%), Query Frame = 3
Query: 2520 NERPKLMGVCRKEYHSSFENYLRGSYWSPDGSALLTNSDDNILRIFDTSSLDKQHHEKEE-NSSDLKPKVRLSEGETVYDVAWYPFMRSQDPDTCCFLATSRDHPVHLWDSNTGRVRCSYRSFDQMDEITSPHSVSFNYDGSKVYCGFNNCIRIFDSNRPGRQFVERSIVRKKTRSRKERQQKSLNQRGIVSSIAFSNQYSGLYALGTFTKTVGLYAANEDEPLFLLREHKGGITHLRFTSDGFYLFSGARKDNELIAWDMRNTSIPLFKMQREVSTNQRILFDIDQTCRYLCSGNTNNEVSVWDINNIMQNVGEEVVKHHPLFSFNAHQDAVNGISIHPTSKYIATTSGQRHF 3578
++ P+ + E+ + EN+L+G W+PDGS +LTNS DNILRI++ + +HE E+ +++ P +R+ EG+T+YD WY M S PDT ++SR++P+H+WD+ TG +R S+R+++ +DE+T+ HS+ F+ DGS+++CGFN +R+F + RPGR R+ KK Q GI+S IAFS LYA G++ +++GLYA ++ PL LL H+GGITHL F DG FSGARKD EL+ WD+R + PL+ + REV+TNQRI FD+D T ++L SG+T+ VSVWD + + K P+ SF +D NG+S+HP+ +AT SGQR F
Sbjct: 151 SQLPRFLSGSWSEFSTQPENFLKGCKWAPDGSCILTNSADNILRIYNLPP--ELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTARPGRDCEVRATFAKKQ-----------GQSGIISCIAFSPAQP-LYACGSYGRSLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFDLDPTGQFLVSGSTSGAVSVWDTDGPGND-----GKPEPVLSFLPQKDCTNGVSLHPSLPLLATASGQRVF 485 The following BLAST results are available for this feature:
BLAST of TCONS_00007097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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