TCONS_00007140 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007140
Unique NameTCONS_00007140
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007140 ID=TCONS_00007140|Name=TCONS_00007140|organism=Clytia hemisphaerica|type=transcript|length=651bp
aaatttcAGATCGAAATGAATTGCTGTAACAAAATTCTCGACTTCAAGAG
GAAGAAAAGAATGACATGTGGACTTGCTTCATAAAAATTGAGTAGAAAAG
aatcaaagtttttttcaaaaacaagctataaactttaaaaaacttgaCAG
ATAACGGAAGAGCATCGAGTATCTTGCTAGAGATTTTGATCTCGTTTTCG
CCATCATTCACACGTTTAGCACGATGTCcagaaatcaaattttctattCG
GACAAATACAGTGATGAGGAGTATGAGTACAGACACGTTTTGATTCCAAA
AGAAATGGTCAAGAAGGTCCCGAAGACACGCCTGATGCAAGAAAATGAAT
GGCGTGATTTAGGCGTCACTCAATCCAGAGGATGGGTCCATTATATGCAG
CACCATCCAGagcctcaaattttgctttttcgAAGACGCTTGACAGCCAA
TTGAGGATTTGGCTGTCACTCCTTTTGTGTTGTTCCCTGGTTTATAATGA
TGAGGATTTTGGCTACTCCTTTTGTGTTGTTCCCTGGTTTATaatgatgt
tgttgttgttttattgttacaaattttattgttgttttgaataTTCTCTC
TGTAAATAAGGTTTGTTTGTTCGTataccagaatagaaataaaactatAA
A
Run BLAST on NCBI

transcript from alignment at sc0000074:145821..147549+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007140 ID=TCONS_00007140|Name=TCONS_00007140|organism=Clytia hemisphaerica|type=transcript|length=1729bp|location=Sequence derived from alignment at sc0000074:145821..147549+ (Clytia hemisphaerica)
aaatttcAGATCGAAATGAATTGCTGTAACAAAATTCTCGACTTCAAGAG
GAAGAAAAGAATGACATGTGGACTTGCTTCATAAAAATTGAGTAGAAAAG
aatcaaagtttttttcaaaaacaagctataaactttaaaaaacttgaCAG
ATAACGGAAGAGCATCGAGTATCTTGCTAGAGATTTTGATCTCGTTTTCG
CCATCATTCACACGTTTAGCACGATGTCcagaaatcaaattttctattCG
GACAAATACAGTGATGAGGAGTATGAGTACAGGTGAGATATTTCCCAGTA
GACAAAGCACCTTGTTTGAACGTTATTAATgtttacaacgtccatataat
atTAGATGAACCTTGAAAGAACCATGTGTCCCATCTGGGTTTAAAAAGTA
TTCAATCGAAGTGAGCAcgaaaatttttagatatttctcTCTTTTTCACT
GCCTGAAAACTGCTTAAAATTCCAAGGTGTAAAAAAGTAAAGGGGCACCA
AAATTGCTCATTAGATAGGCCTTTTTGTTCCACTTGTTTTTTGGTGCCTC
TCCAAAAATAATAGACCGCTGTGGGGCAGCTTATCGCCACGCTACTGGGT
GGGGATGCTTGAGTCTTGGTACGAGCTAATCGCATTTCAAAATCCCGCTC
CTTAGAGAGACCAATATTCGCAAGAAAGCACCTTTTAAAAATGTCCTTTG
TTTTTAAAGTAGGTCTTATTGCAAGTCTTCTTTTTATCCCTTAGAAACGG
AAAACTTTCAATTCTTTCAAAAACTATACATTAACATTTTCAGACACGTT
TTGATTCCAAAAGAAATGGTCAAGAAGGTCCCGAAGACACGCCTGATGCA
AGAAAATGAATGGCGTGATTTAGGCGTCACTCAATCCAGAGGATGGGTCC
ATTATATGCAGCACCATCCAGGTATGTGATAGTTAGATAGTTGGTGTGTA
ACGAATGGcatataaaaaagtttaaaacggGCAGCCTTTCCATTTCAGAA
CTTAAAATAGAATAgaataaatagaccttttttgcTGGACGTGTCATCAT
GTTGAACATAATAATAGCTCcactccagcatcaaaacaatgataagaaaa
tatttagTAACACGTTTATCATTTATGCTTTTGTGTGTTACTGTTGAAAA
GCTGGAGCTTTCAACTGTTTAACATGACATCACGTCCTACAAAACACCCA
TCTTGCTTGTTTTAagtccaatagaccttttcataaactacgtcacgagc
aacaattacctcgttttcaaaatattcctaTCGAGGAGGAGCTCATAAGA
ATTTTACTCCATTCATAACAGAAACACTTGAAGGCACAAGGGGTCAAATT
ACCTTGGTaatgatttcaaaacgaggcagttgttgcattgaaaataattt
atgcGAAGGCCCATATTTGCCTAGGTAATAAGTCTGGCAAAAGAGCATAA
GAATTATTTCATGTTTTCAatattcttttttgtttcagagcctcaaattt
tgctttttcgAAGACGCTTGACAGCCAATTGAGGATTTGGCTGTCACTCC
TTTTGTGTTGTTCCCTGGTTTATAATGATGAGGATTTTGGCTACTCCTTT
TGTGTTGTTCCCTGGTTTATaatgatgttgttgttgttttattgttacaa
attttattgttgttttgaataTTCTCTCTGTAAATAAGGTTTGTTTGTTC
GTataccagaatagaaataaaactatAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004006XLOC_004006Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007140-exon-sc0000074-1491911889:145821..146102TCONS_00007140-exon-sc0000074-1491911889:145821..146102Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1510915933:145821..146102TCONS_00007140-exon-sc0000074-1510915933:145821..146102Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1575043694:145821..146102TCONS_00007140-exon-sc0000074-1575043694:145821..146102Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1491911889:146614..146741TCONS_00007140-exon-sc0000074-1491911889:146614..146741Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1510915933:146614..146741TCONS_00007140-exon-sc0000074-1510915933:146614..146741Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1575043694:146614..146741TCONS_00007140-exon-sc0000074-1575043694:146614..146741Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1491911889:147309..147549TCONS_00007140-exon-sc0000074-1491911889:147309..147549Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1510915933:147309..147549TCONS_00007140-exon-sc0000074-1510915933:147309..147549Clytia hemisphaericaexon
TCONS_00007140-exon-sc0000074-1575043694:147309..147549TCONS_00007140-exon-sc0000074-1575043694:147309..147549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:145821..147549 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
369.948	359.114	429.325	483.334	0.649462	0.256607	0	0	0.0676389	0.0837817	0	0.053457	0	0	0	0	0.120511	0.18528	0	0	0.543243	0.454242	127.372	110.11	0	0	5.06281	5.40317	50.5137	51.4655
Blast
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BLAST of TCONS_00007140 vs. Swiss-Prot (Human)
Match: CKS1 (Cyclin-dependent kinases regulatory subunit 1 OS=Homo sapiens GN=CKS1B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.753e-22
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 2 
Query:  224 MSRNQIFXXXXXXXXXXXXRHVLIPKEMVKKVPKTRLMQENEWRDLGVTQSRGWVHYMQHHPEPQILLFRRRL 442
            MS  QI+YSDKY DEE+EYRHV++PK++ K VPKT LM E+EWR+LGV QS+GWVHYM H PEP ILLFRR L
Sbjct:    1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEPHILLFRRPL 73
The following BLAST results are available for this feature:
BLAST of TCONS_00007140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CKS12.753e-2271.23Cyclin-dependent kinases regulatory subunit 1 OS=H... [more]
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