TCONS_00007158 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007158
Unique Name	TCONS_00007158
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1399

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000074:416850..422521+
coding sequence from alignment at sc0000074:416850..422521+

transcript sequence

>TCONS_00007158 ID=TCONS_00007158|Name=TCONS_00007158|organism=Clytia hemisphaerica|type=transcript|length=1399bp
aaattatgtgaaaaaaaatattcaccGACTTGACTGTAACTTAAAAACTG
ATTATGGAATTGAggtgaaatgaaaattttaacatacCTTCTACTTCTAG
CTTTATTGGTCTGGCAAAGTCTACAAAACCAATCACTCACTTTAAATTTT
GGTTCACGAGGAAAGAAGTTTATTTCAGggaaaattttgttggctttgAG
TGGAATCAAGGCTCCTCATCTTTGTGTAGCTAACTGTCTGGCGTTCGGAG
CAGAGAAATGCAAGTCAGTCAATTacaacaaaaagacaaaagaatgtCAA
TTGATGgatgaaaatcaacaaaatgttGAAGATGAAGACAAGTTTGAAAA
CGATGAAGATTGGGAATATTATGGCGAAAAAGAACGAAAGATGGAATGTT
TTTCCAAAGGTGACAGCTCACTATGTTGCATAGCAACACAAGATCGAACT
TGCCAAAAACcgCATAATTGTTCAGAAATCCAATCATCCTGTTCACATTG
CAAACCTGGCTTTTACTCCATGTTGGATGGTCGCAACGTATTCTGCAATT
TCAGCACTGATGATGCTGTCTCGACTTGTAAAACAATCAAAGATGTGATT
CCAACAACATCTTCCGGATTTTACTTCATTGCATACGGTCAATACGTTGT
CGAGTATTACTGCGATATGACAACAGATTCAGGTGGATGGACTATGTTTA
CCAACGTCACAGTTGCAACCTCCACAGATGCTCAAAATAATATCTATGAT
AACATCAAACAAGAATACTTGGGCTCGATGGAGAATGTGAAAACTGGACG
CTATGCTTTACACACGGCGACCCTAGAATGGATCCAAGAAAAAACTGGAT
TCAGCGAAATGCGAATTAAATGTCACAAGCCGTCTTTGGGATTTCATGTT
GACGTCCTTCTAAATTATGCCTCTGAAATTTTCGGCAACAGTCCTTCAAA
GAACGTGCACTCTCCAGCAGACTTTCGACCTCTTCCAGATGATACCAGAT
ATAGTCAAGTGTCTGGTCAATGGGTCAAAGGTACAATTTGGTACACACAT
ATATTATATGTTGGAGCTAAATATCACATCATCATTGATAGAACAGACCG
ATGGGAATGTGGAGATTATGTGGGTGTACAACCATCAGGTGTTACATATT
CTCCTATTGGAAATTGGCAATTCTTTTTTCGATAAATTGATAATTCAAGA
AATGCGCCCCCATAATGTCTTTAATATTGATGTCACTTTTAAAAAAGCTA
GATTTTGGTTGGGAGTTATAATTTCGTGGGTTTTATCATCAAAAGCAGAG
TAGCATCAAAACGTACCTACGCCTGATGAAATCTGTAGGCGTGAAATTGC
TGAAACTCGAGCCATAAAGATTCATGGTCCGAGGGGATAAGGTTTAATC

Run BLAST on NCBI

protein sequence of TCONS_00007158-protein

>TCONS_00007158-protein ID=TCONS_00007158-protein|Name=TCONS_00007158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MKILTYLLLLALLVWQSLQNQSLTLNFGSRGKKFISGKILLALSGIKAPH
LCVANCLAFGAEKCKSVNYNKKTKECQLMDENQQNVEDEDKFENDEDWEY
YGEKERKMECFSKGDSSLCCIATQDRTCQKPHNCSEIQSSCSHCKPGFYS
MLDGRNVFCNFSTDDAVSTCKTIKDVIPTTSSGFYFIAYGQYVVEYYCDM
TTDSGGWTMFTNVTVATSTDAQNNIYDNIKQEYLGSMENVKTGRYALHTA
TLEWIQEKTGFSEMRIKCHKPSLGFHVDVLLNYASEIFGNSPSKNVHSPA
DFRPLPDDTRYSQVSGQWVKGTIWYTHILYVGAKYHIIIDRTDRWECGDY
VGVQPSGVTYSPIGNWQFFFR

Run BLAST on NCBI

transcript from alignment at sc0000074:416850..422521+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007158 ID=TCONS_00007158|Name=TCONS_00007158|organism=Clytia hemisphaerica|type=transcript|length=5672bp|location=Sequence derived from alignment at sc0000074:416850..422521+ (Clytia hemisphaerica)
aaattatgtgaaaaaaaatattcaccGACTTGACTGTAACTTAAAAACTG
ATTATGGAATTGAggtgaaatgaaaattttaacatacCTTCTACTTCTAG
CTTTATTGGTCTGGCAAAGTCTACAAAACCAATCACTCACTTTAAATTTT
GGTTCACGAGGAAAGAAGTTTATTTCAGggaaaattttgttggctttgAG
TGGAATCAAGGCTCCTCATCTTTGTGTAGCTAACTGTCTGGTAGGTAGTA
TATATTCAAGATATTTTACGCGGAATTTTATTCATTCCCAGAGATGACAT
AAacactaaagtctattcacgataagtgtgcactcttttttcatttacct
ataacttttgaaggaattcctcaatctttataaatttggtatcgttggaA
AGATATTAGTGAGTGGAACAATTTGAAATAAAAAAACCTATaaagaaatt
ctaaaaatgaagatgaaaatgaagaagaaaaaaatgaagatcttgtagaa
aggtgatataactatcatttttacTGAAGTGACTCCCTCATTATCAAAcg
ttatcactgtgaaaaaatttctcaaaaataatcattcagtcaaaatatat
caaacaaagttataagctgattgacgtctaaaaacgctgttttctgctgt
tttctgcagttttttggcgtcaatcacttattaactttgtatcataactt
tatattgaataaatattttaatgaaatttcttcacagtcatgacctccta
agatcaaagaatctctccagtgaaaatgaaagttatagcacttctctata
agatcttcatttttttcttcttcgtttttagaatttttttaaagactttt
ttacttcgaattgttccactcacaaatatctctccaacgataccaaattt
ataaagaaggaagaattctttcaaaagttatagctaaaagaaaaaagagt
gcacacttatcgtgaacagactttaattcTAATTCTAAGACATTAGTTGA
ACCCAGAGCCTGGAACCCTGGACTATGCGAGAGTACTAGCTTTTCTTTTT
gctaatttctattttttttctacagGAAAGAGATTTGGTAGACGAATTTA
ATATGTGaaactgtaaaaaaaaaatttaagtttcCCACCCATTACAAATC
GTTGGGGTAAGACCCTGCAAACACAATTATTAGTTTGGCTAAAAAGACTA
CATTGTTTATATTTAAAGGCGTTCGGAGCAGAGAAATGCAAGTCAGTCAA
TTacaacaaaaagacaaaagaatgtCAATTGATGgatgaaaatcaacaaa
atgttGAAGATGAAGACAAGTTTGAAAACGATGAAGATTGGGAATATTAT
GGCGAAAAAGAACGAAAGGTGACATTACTTTAGATTATCATCACCTTCTC
AATAAGTACTTGCTGGAATTAGTTTCCACATTAGACATGCAAGCGTCGGC
TTTTTCTTAGACACGTCAGAATGATCGTTATAAAAAGTTCTTACAGAAAT
AAATTACCCCGGGAGAAAGAATTGAAAGCTTGTTCAGTATACATTGGAAC
CTCCAAAACTACGAGAGGTGTTTTCACATCCTCATCTAAATGGAGGCTAT
ATGTAGTAGCAATCGTGATATGCATTGAGAGACTAATAATTTAGCAACAT
TAAATTTTTAACCTTGGATAAAATTCGGTTAGTTAGGGAAAATTGGGAAA
AGTTTTGAGGTGTATTCTTTGACTTATACAATAACATAACATGTATGCAA
ATCTGTCAATCTGATTTTTAGATGGAATGTTTTTCCAAAGGTGACAGCTC
ACTATGTTGCATAGCAACACAAGATCGAACTTGCCAAAAACGTAAgaaat
ttttatgaaagttatgtcaaaaataaataatgatTAAATCGTCAGTGAAG
ATAGGGATCCGATCGTTCATCGTTCAAATGCTTTCCATGTCTGGAAGGGA
TTTGAAGACAGTTTATTGATGGGAACCTTTCAAACAACAAATCTGTAGAA
TGTTAATGAGACACAATGATAGTGTTCCAGATGGTGAATCAATCCAATCA
ATCAATTTAATGTatcttaagggctctggccatagtcagaaaattgattt
tagtatctgaacataaaagttatcttttagattctttaacattttcaaca
aagaattgcctttataaattgctttttaatcaaactccttaagagtaatt
aagaacttaattgcaaaaatgacgttatgaactttaaatagacgttaata
atatgttgcatcaccttcttttataaaaagtgctaagttttaatgggtaa
ttaacctttttctttcgaacttttttcgaactattttaaattttgcggaa
aatctttctaaaaagatgtgtcaaaagttatgactgttttttaagcaaaa
tccagatgaaaaattgatgaaaaaccactaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggtaaaagatacacc
aactactgcaaaaaatttttaaaaatgttttttcttcgccgaaactaagc
tcttcaaagttgatatACTCTTccttgcaaaagtcttcattttctttcca
tcaaattttttcaatgcaatttttgaattttcagatttgggaatagtttg
tctaacagaaaatgtataacatgccatagttttgttggttacatcagtca
gaaaacacattttaaacacggcaattatgaaaaattcactatggtcagag
cccttaaatttaattttattcattttaaatTTGAGCCTTATTAAGAAATG
GTATATCTGATATAAAACTGATATATCTCTCAAAACGACTGGTGATCCAA
CTGATTGACTAAATTAGCTTAGTAAAGCTGCATTAATGACCATTCATTCA
ACTTCAGTTAATTATTTGCGGAGGCTATCATATGGAAGTCCACATTGTAG
TAATCTTTCTTTTATTCAGCTTGGGTATGTATCTTGGGTAAGGTTTCTTT
ACTCCTTTACGATAttactttttttccatttctttttcttttagcgCATA
ATTGTTCAGAAATCCAATCATCCTGTTCACATTGCAAACCTGGCTTTTAC
TCCATGTTGGATGGTCGCAACGTATTCTGCAATTTCAGCAGTAAGTAAAG
TTGAAAGTTCACTTTGTTCTTAGCATTTAAAGATCGCTTTCTTTGCTGGC
TGAtactttaaaaagaaaggtCNATTCTTGGCATTTAAGGATCATTTTCC
TTGCTGGCTaatgaggcccccccccccagcggacactcaattcacgcaat
cacgcatttttttttccgaattcacgcattcacgcaaattttcctcgagt
ttcacacaataatccgatttttcagaaaccggaattttttcgggaaaaat
cggggaaacataggaaaatcggggaaaatgcaCATAATCgttggaaaaaa
gggaaaattcacgtattcacgcaatcaaaaagtggattttcacgttcatg
caagttttttcaattcacgcattcacgaatttttttttcaattttcacgc
attcacgcaaccgaaaatgcccattcacgcattcacgcaaactgcTGGGG
GGCGCTAATACTGTAAAAAGAAAGTTCATGCATGTACAATGCAACATTGC
ATCACATCTATTATTTCAGCAATGGATGCGATACGAGACGATTATTTAAC
AAGGCTGAAAATTCACCataacctaagaacaaattaagaacactCTGAgc
ttcagatttcagaaattactaatATAAGACCGATTTTaacagatttcaaa
taaaaaaataaccctattaagaatatcttaatataaatttttttagtgtt
taaggggggggggggggggggagggagGAGGGGGGTCACCTCCCTAGTtg
caaataatttttcaaaaaactttaacAGTGTTCTTAAATTACTCTAAAAA
TGTTTCCATAAATTGTGATGATAATTtggtatttcttttaaatttaatag
gaaattgcatattttagagCCTGCAAAGCCTTAAGATACTCTTATAATAT
TCTTAAACTTTAGACCTTGTGCTCTTATAGACTTTGTTCTCattgtaaaa
attttgatcGTTTTAGCTGATGATGCTGTCTCGACTTGTAAAACAATCAA
AGATGTGATTCCAACAACATCTTCCGGATTTTACTTCATTGCATACGGTC
AATACGTTGTCGAGTATTACTGCGATATGACAACAGATTCAGGTTAGTGC
CATCTGGTTGTCATCATCTCTCATTAAATCTTTCATATGCTCAAAAGTGT
GAATGTCATCATTTTAAGTATCTTCTATCATTTGCTTACAAAGCGAAATG
AAATCATTTAACCTATTTCCTACTATTTGCTTCATAAACAAAAGAAGGAG
TATAACTCCCGTACCGTGTAAATTTGTTTGCgaattctgctttgtcagca
taagagCAACCTTCCAAcaaacctaattttttatttcatgaatattgccc
ttatgtattacaatgaGGTGAATACAGTCGTTGTttaacggttctggtgg
ctggtcagaaaacaatatgagagcgactgtattcacctcattgtaatttt
ttatttgttttaaaacGTGATAAAAAAGCCGTTTTCATCTAGCAGGCTAT
CATAAGAGCCGTGTGGGTCTTTTTTTATTCGGCAGAACTCACAAAATTTT
TTCCGCTTGAAAGAATCATGTTAATTTCGCCTCATACATCTGTGCTTTAG
CCACCGTAACtgtcttttaaaatttcaaaatagcgGCTGTGAAAAAAACA
CAAGGTCGCTACTGTATTAATTGTAGAAGAAATTCCAATTCATTCTTTCT
CTCAGGTGGATGGACTATGTTTACCAACGTCACAGTTGCAACCTCCACAG
ATGCTCAAAATAATATCTATGATAACATCAAACAAGAATACTTGGGCTCG
ATGGAGAATGTGAAAACTGGACGCTATGCTTTACACACGGCGACCCTAGA
ATGGATCCAAGAAAAAACTGGATTCAGCGAAATGCGAATTAAATGTCACA
AGCCGTCTTTGGGATTTCATGTTGACGTCCTTCTAAATTATGCCTCTGAA
ATTTTCGGCAACAGTCCTTCAAAGAACGTGCACTCTCCAGCAGACTTTCG
ACCTCTTCCAGATGATACCAGATATAGTCAAGTGTCTGGTCAATGGGTCA
AAGGTACAATTTGGTACACACATATATTATATGTTGGAGCTAAATATCAC
ATCATCATTGATAGAACAGACCGATGGGAATGTGGAGATTATGTGGGTGT
ACAACCATCAGGTGTTACATATTCTCCTATTGGAAATTGGCAATTCTTTT
TTCGATAAATTGATAATTCAAGAAATGCGCCCCCATAATGTCTTTAATAT
TGATGTCACTTTTAAAAAAGCTAGATTTTGGTTGGGAGTTATAATTTCGT
GGGTTTTATCATCAAAAGCAGAGTAGCATCAAAACGTACCTACGCCTGAT
GAAATCTGTAGGCGTGAAATTGCTGAAACTCGAGCCATAAAGATTCATGG
TCCGAGGGGATAAGGTTTAATC

Coding sequence (CDS) from alignment at sc0000074:416850..422521+

>TCONS_00007158 ID=TCONS_00007158|Name=TCONS_00007158|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000074:416850..422521+ (Clytia hemisphaerica)
atgaaaattttaacatacCTTCTACTTCTAGCTTTATTGGTCTGGCAAAG
TCTACAAAACCAATCACTCACTTTAAATTTTGGTTCACGAGGAAAGAAGT
TTATTTCAGggaaaattttgttggctttgAGTGGAATCAAGGCTCCTCAT
CTTTGTGTAGCTAACTGTCTGGCGTTCGGAGCAGAGAAATGCAAGTCAGT
CAATTacaacaaaaagacaaaagaatgtCAATTGATGgatgaaaatcaac
aaaatgttGAAGATGAAGACAAGTTTGAAAACGATGAAGATTGGGAATAT
TATGGCGAAAAAGAACGAAAGATGGAATGTTTTTCCAAAGGTGACAGCTC
ACTATGTTGCATAGCAACACAAGATCGAACTTGCCAAAAACcgCATAATT
GTTCAGAAATCCAATCATCCTGTTCACATTGCAAACCTGGCTTTTACTCC
ATGTTGGATGGTCGCAACGTATTCTGCAATTTCAGCACTGATGATGCTGT
CTCGACTTGTAAAACAATCAAAGATGTGATTCCAACAACATCTTCCGGAT
TTTACTTCATTGCATACGGTCAATACGTTGTCGAGTATTACTGCGATATG
ACAACAGATTCAGGTGGATGGACTATGTTTACCAACGTCACAGTTGCAAC
CTCCACAGATGCTCAAAATAATATCTATGATAACATCAAACAAGAATACT
TGGGCTCGATGGAGAATGTGAAAACTGGACGCTATGCTTTACACACGGCG
ACCCTAGAATGGATCCAAGAAAAAACTGGATTCAGCGAAATGCGAATTAA
ATGTCACAAGCCGTCTTTGGGATTTCATGTTGACGTCCTTCTAAATTATG
CCTCTGAAATTTTCGGCAACAGTCCTTCAAAGAACGTGCACTCTCCAGCA
GACTTTCGACCTCTTCCAGATGATACCAGATATAGTCAAGTGTCTGGTCA
ATGGGTCAAAGGTACAATTTGGTACACACATATATTATATGTTGGAGCTA
AATATCACATCATCATTGATAGAACAGACCGATGGGAATGTGGAGATTAT
GTGGGTGTACAACCATCAGGTGTTACATATTCTCCTATTGGAAATTGGCA
ATTCTTTTTTCGATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004013	XLOC_004013	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007158-protein	TCONS_00007158-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000074	supercontig	sc0000074:416850..422521 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0298132	0.11629	0.0337561	0.1321	1.16594	1.23904	1.26488	1.29181	0.728568	0.902449	0.785325	0.933206	8.1889	8.6278	5.18025	3.88781	1.67855	2.5004	15.751	11.3419	4.52554	5.06156	1.70916	3.79146	3.20091	5.02786	0.940237	1.00345	0.661807	0.539421

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR014716	Fibrinogen_a/b/g_C_1
IPR002181	Fibrinogen_a/b/g_C_dom
IPR003609	Pan_app

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00007158 vs. Swiss-Prot (Human)

BLAST of TCONS_00007158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00007158 (transcript) - C. hemisphaerica