TCONS_00072732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072732
Unique NameTCONS_00072732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072732 ID=TCONS_00072732|Name=TCONS_00072732|organism=Clytia hemisphaerica|type=transcript|length=3544bp
CTTAAGGCGTCATCGATAATACAGTCTGGTCATTCTCTGGGAAAGTGAGG
ACGTCATGCAGTATCCACCGTCCAATATTGAGCTACCCTCCATCTCAATC
GCCGACGAAAGCGATTTATATTACGACACTGACGGAAATGTCGAacgtaa
aaagaaaaaatcatcatTGGCTAACAATAAGAAAATTCTATCACTTAATA
ATTTGGCACATTGTCACACTTTAAAGGTCCCTAATTTATCTGATTGCAGT
GATCAGTCTGGTTCACTACCAAGCAGTTTGAATAAAGTGATGTCTTATAA
GATTCCTTGGTACAGACGTTTATACGATAACCGAACATCTTCATCTTCTT
TTGATTGTATAGGGCGTGAATTCCGCAGCGAATCACACCGCCGTTGGAGT
GTGGCCACACAGAAGATCAAGAGTATCTTAGCAGTCAATGACGCTTTGAA
TGGAAGCAAAACGAGAGCTCGCGACCGCGAACGAAGTATGTCCATCGAAC
AAAAATCACATTTCTTGGATAAATTCAGCACAACTAGAGACCGGCGATTT
TCCGGCGCAAGTTTCGACCTACGACGCCGACCGGATGGAAACCATTTAAC
TGACGGAGCATCAAACATCAGTTCTGTTGAACTCAAAGAGCTGTTAAACG
ACATCAAAGATTCAAAAACTAACGTTTCAAATTGTATCGATGATTTTCAT
GAGCAAAGGCGATGTCGTTTCTTACATATACTATTTGAACCTTATAGCAC
CTTCATCTATATCTGGTCATGGATCGTCATACTGGCCATTCATTACAACA
CCTGGGTTATCATTCTACGGATAGCCTTCCCTGCGGCACAACGCAATTAC
ACCGGTCTTTGGTTTTCACTGGACTACACAGCAGATTTGATATACATTAT
AGACGTTCTAGTATCCTCCAGAATGTCTTTCCTGGAGAACGGGATATATG
TAGAGAGCGTAAAACGAGTTACAGTTAAATACTTTAAATCAACATTATTT
ATTTTGGACTTGGTCAGCTTGCTACCGTTAGATCTCttatatttgttctt
tcaaACCAACCCTGCATTTCGTATACCTAGGcttatcaaattttttaaag
tctTCCAAGGGAAAAAATTAGTGGAATCGATGACTAACTTTCCGAATTTG
GTTCGTGGTGTATTTTGGTTGCATATTATGTTTTTATTGATGCATTGGAA
TTGCTGTTTCTTTTACATTATTTCGGAGATGGAAGGATTTGGTTCCAATA
AGTGGGTGTATCCAAAGCTAGAAGGATTACATCATATTTTGATCCACAGA
TACATCAAATGTATGTATTGGTCAACGCTAGTACTAACCACAATTGGTGA
GGATAGCACTCCAGAAACAACAGTGGAATGTGCGTACATGATCGTTTGCT
ATATCACTGGAATCTTCATATTCGCGACCATCGTTGGGCAAGCTGGAAAT
GTTATTCAAAATATGAACGCAAGCCGAATGGAGTTTGAAAGACAAAGgGA
TAACACAATGCAGTATATGAAAGAACACAACGTACCAACACATTTACAAA
AACGTGTCCGATTATGGTACGATTACACGTACTCAAGAGGACGTTTCAAT
GGTGGAGACGACATTAATGAAATTACCATGCTTCCTGATAAAATGAAAAC
GGAATTAGCTCTTCACGTTCATCTAGAAACTCTTAGAAAGGTTTCATTCC
TTCAAAAATGTCAACCGGAGTTTTTACATGATTTGGTATTGAAAATGAAG
CTTCATATTTTTACACCGGGTGATTTCATAATCAGGAAAGGAGAAATTGC
CAGAGAGATGTATGTTATTAGTGATGGTATGGCTGAAGTGGTCAGCGAAA
GTGGACGAGTGTTGAAAGTGTTGCAAGCTGGCGATTTCTTTGGTGAAATT
GGATTACTTAGTCTAAGTGCTGGTCAAAACAGgAGAACGGCAGACGTTCG
GTCGTGCGGATACATCGAGTTATTTGTACTAAGCAAAGAAGATGTGATGT
CATCTATACGAGATTACCCGGAAGCACAGCGTATCCTTGCCAAGCACGGC
CGCAAACGGTTAGCGCTCGGCTCTATAGTGGCAGCTGGACCACGTGATGA
AACGACGTCAGGGAGTAGCCAATCAGATAGCGAGATCGAATTAAAAATCA
CGCGGCCAGATTCCGACGAAGGATCGTGTCGTTCGTTATTCGAGAATGGa
gatattgaaaataataacACATCTACAGTGCGTAAAAATTCTCATACCAA
AATTGATATCAAAGACGATAATGTCTTCACTGATCGAAAAGATGACGTCA
CTGAAACAGGATCTGTCAATAAATATCTAACCTCGCCaagaaatagtatt
tttttggaTACACCCAATCATAAGTCACGCTCAATGGTTCATTTGAAACA
ACGTGCATCAGTGGTTACTCACGGACACGGTAATGTTGTCGGACCTGCAA
CTTCTATAAAAAGCCTTGATAAACGAACTTTAGAAAATTCGTTATCACAG
AGTTTTTCAAGAAGGTCGTCACCTCATCGGTCGGCCAGTCGGATCAGTCA
GGTAAGTAAGACACCCTCTCCAACAACAAACTTCACATCAGATTCAGGAG
AAGAAAACAGTGACCACGAAAATCATCGCGATGAGAGTTTGGCGAAACGT
TGGCTTAAACCACGCACAAAGAAACATATGCAACGTAGTAATTCCGATAT
GCAACGGCGTCCGAAACGAACATCAAACCGTAGCAAACGTTGCGTTTTTA
GTGACGGGGAGAGTAAGAATTATCATCATTGGAGTGAAATCATGAAAAGA
GGATCTTCGGTTTCCACATGTAGTTACCACTCTGCCGGCGCCGCTAACCA
CACCACAACCACCACCACAAAACACCAACGCCACAGTGTAGCAACTACAC
CTACAGCCAAACATCGAGATACGACCACCGATGAAGACCTGTTCTTAAGA
TCTATGAAAAAACTTTATCTAGAGACCACCAAACATTTCAAGAAACGAAC
GCATACGCAAGTTAAAcggttgaaaagaaaaatgtcagATATGGAACAAT
CGTACTTAGAAAGTTACTTAGCGAAAGAGAAGGAATGGTCGAATCGTGAC
GAACAATTAAGAAAAGAACTTTTTCGTTTGGAAGAACAAATGTATGATAT
GAAGGGTAAAATGAAGGAAAAAGATGAAGAGATAAACAAATTATTGGGTG
CTTCTGATACTTCAAATACAAATTCATTGGTCAAAAGTAACCATCTTGAA
GCAATGGTTGTTGAAGAGAAAAATCGCATCTTCACTCGTAATCATCATCG
AGCGataaataTTTGATTCGATGTGGCGAGAATGGAGACACGTGAAGGTT
GGAGTGACAACACGGCAGATTGAAATCAtcagaaatgacgtcatttagtc
TCAAAGATGACGTAATCATCCCAAACCGAACCAAAAAcaatatatttatt
tatttcgaATTGTAGATAAACCCTTTCTATAAATAGAGTACAAATGTAAA
GCAACGAGAAAAGAATCCCATCACTTCTAATTTTGGACCCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00072732-protein

>TCONS_00072732-protein ID=TCONS_00072732-protein|Name=TCONS_00072732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1086bp
MQYPPSNIELPSISIADESDLYYDTDGNVERKKKKSSLANNKKILSLNNL
AHCHTLKVPNLSDCSDQSGSLPSSLNKVMSYKIPWYRRLYDNRTSSSSFD
CIGREFRSESHRRWSVATQKIKSILAVNDALNGSKTRARDRERSMSIEQK
SHFLDKFSTTRDRRFSGASFDLRRRPDGNHLTDGASNISSVELKELLNDI
KDSKTNVSNCIDDFHEQRRCRFLHILFEPYSTFIYIWSWIVILAIHYNTW
VIILRIAFPAAQRNYTGLWFSLDYTADLIYIIDVLVSSRMSFLENGIYVE
SVKRVTVKYFKSTLFILDLVSLLPLDLLYLFFQTNPAFRIPRLIKFFKVF
QGKKLVESMTNFPNLVRGVFWLHIMFLLMHWNCCFFYIISEMEGFGSNKW
VYPKLEGLHHILIHRYIKCMYWSTLVLTTIGEDSTPETTVECAYMIVCYI
TGIFIFATIVGQAGNVIQNMNASRMEFERQRDNTMQYMKEHNVPTHLQKR
VRLWYDYTYSRGRFNGGDDINEITMLPDKMKTELALHVHLETLRKVSFLQ
KCQPEFLHDLVLKMKLHIFTPGDFIIRKGEIAREMYVISDGMAEVVSESG
RVLKVLQAGDFFGEIGLLSLSAGQNRRTADVRSCGYIELFVLSKEDVMSS
IRDYPEAQRILAKHGRKRLALGSIVAAGPRDETTSGSSQSDSEIELKITR
PDSDEGSCRSLFENGDIENNNTSTVRKNSHTKIDIKDDNVFTDRKDDVTE
TGSVNKYLTSPRNSIFLDTPNHKSRSMVHLKQRASVVTHGHGNVVGPATS
IKSLDKRTLENSLSQSFSRRSSPHRSASRISQVSKTPSPTTNFTSDSGEE
NSDHENHRDESLAKRWLKPRTKKHMQRSNSDMQRRPKRTSNRSKRCVFSD
GESKNYHHWSEIMKRGSSVSTCSYHSAGAANHTTTTTTKHQRHSVATTPT
AKHRDTTTDEDLFLRSMKKLYLETTKHFKKRTHTQVKRLKRKMSDMEQSY
LESYLAKEKEWSNRDEQLRKELFRLEEQMYDMKGKMKEKDEEINKLLGAS
DTSNTNSLVKSNHLEAMVVEEKNRIFTRNHHRAINI
Run BLAST on NCBI

transcript from alignment at scaffold_82:371240..378865-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072732 ID=TCONS_00072732|Name=TCONS_00072732|organism=Clytia hemisphaerica|type=transcript|length=7626bp|location=Sequence derived from alignment at scaffold_82:371240..378865- (Clytia hemisphaerica)
CTTAAGGCGTCATCGATAATACAGTCTGGTCATTCTCTGGGAAAGTGAGG
ACGTCATGCAGTATCCACCGTCCAATATTGAGCTACCCTCCATCTCAATC
GCCGACGAAAGCGATTTATATTACGACACTGACGGAAATGTCGAACGTAA
AAAGAAAAAATCATCATTGGCTAACAATAAGAAAATTCTATCACTTAATA
ATTTGGCACATTGTCACACTTTAAAGGTCCCTAATTTATCTGATTGCAGT
GATCAGTCTGGTTCACTACCAAGCAGTTTGAATAAAGTGATGTCTTATAA
GATTCCTTGGTACAGACGTTTATACGATAACCGAACATCTTCATCTTCTT
TTGATTGTATAGGGCGTGAATTCCGCAGCGAATCACACCGCCGTTGGAGT
GTGGCCACACAGAAGATCAAGAGTATCTTAGCAGTCAATGACGCTTTGAA
TGGAAGCAAAACGAGAGCTCGCGACCGCGAACGAAGTATGTCCATCGAAC
AAAAATCACATTTCTTGGATAAATTCAGCACAACTAGAGACCGGCGATTT
TCCGGCGCAAGTTTCGACCTACGACGCCGACCGGATGGAAACCATTTAAC
TGACGGAGCATCAAACATCAGTTCTGTTGAACTCAAAGAGCTGTTAAACG
ACATCAAAGATTCAAAAACTAACGTTTCAAATTGTATCGATGATTTTCAT
GAGCAAAGGCGATGTCGTTTCTTACATATACTATTTGAACCTTATAGCAC
CTTCATCTATATCTGGTCATGGATCGTCATACTGGCCATTCATTACAACA
CCTGGGTTATCATTCTACGGATAGCCTTCCCTGCGGCACAACGCAATTAC
ACCGGTCTTTGGTTTTCACTGGACTACACAGCAGATTTGATATACATTAT
AGACGTTCTAGTATCCTCCAGAATGTCTTTCCTGGAGAACGGGATATATG
TAGAGAGCGTAAAACGAGTTACAGTTAAATACTTTAAATCAACATTATTT
ATTTTGGACTTGGTCAGCTTGCTACCGTTAGATCTCTTATATTTGTTCTT
TCAAACCAACCCTGCATTTCGTATACCTAGGCTTATCAAATTTTTTAAAG
TCTTCCAAGGGAAAAAATTAGTGGAATCGATGACTAACTTTCCGAATTTG
GTTCGTGGTGTATTTTGGTTGCATATTATGTTTTTATTGATGCATTGGAA
TTGCTGTTTCTTTTACATTATTTCGGAGATGGAAGGATTTGGTTCCAATA
AGTGGGTGTATCCAAAGCTAGAAGGATTACATCATATTTTGATCCACAGA
TACATCAAATGTATGTATTGGTCAACGCTAGTACTAACCACAATTGGTGA
GGATAGCACTCCAGAAACAACAGTGGAGTAAGTTTGATTTCGATTTTGGA
GTGAACAATCAATTGACTAGAATTCCTCCTTTATCTAGCATCCTATAAAT
TTTAGTCAAGCCTTTCGATCTTATGTTGTGAAGACTGTGAAACATAATAT
TAATAGGGTCTCTCACACCTATGGTTTGGATCAGATTTTCACCCAAAGCT
AATGTCTAACATTAAGGATTGAGAAAAACAGCAATTTTCCCACAGTCAAA
AACTTTTATCAATTCTTTATAGATGTGCGTACATGATCGTTTGCTATATC
ACTGGAATCTTCATATTCGCGACCATCGTTGGTAAGTTTTTCTAGAGTGC
AGAAAAATCCATTTTTAGAGTGAAAAGCCATATTAAATCATGTCGCTGAT
ACGGTACTCAAGGGAATTATGGTTTGATGAGATGTTCAGCAACCTTGCTT
ACTTACATTTATTTTGAAAAAATTGCAAGAAATCAGATTATTTAGACCCG
TACAATGTTATTAGATGTCTTCGAAAAATTTGACAAAAATCAATTCAATT
TTAGGGCAAGCTGGAAATGTTATTCAAAATATGAACGCAAGCCGAATGGA
GTTTGAAAGACAAAGGGTTAATTCAATTTTTTTCCTTTACTCTGATAGGT
TCTTTTAGGTTAAATGAAACTCGCCTTTATAACCGATTGTGACGTGGCTA
CAATTTTTCAGTTTTTGCCTTAAAACTTTCAGGGTGTATTGAGTCTTATC
TAACCCGTTCATATCAAACTTACAGGCTAAGTACAACAAAAGAAAATAAC
CAACATAAAATTTACGCAGATAATCAGACATTAGGCTAAAAGAAGCCCCC
AAGCAGTTTGCGTCGTGATAGGGACTGTTTTCTAGCGTGATAACATGTCA
TCATTTTGAATTTGTTTCTTCTTGATCGTGAACTGAAGTATTTTTTCAAA
GGGATGTGTAATTATCCAAGTTTTTTCCTGTTTTACGTGACCGTGATTAA
AGACAAAAAATTACATGATATTGTGATCAGAGTTACCGCTGGGGGAGCCT
TCTAAAATATTTGTGAATAATTCTTTTCAGGATAACACAATGCAGTATAT
GAAAGAACACAACGTACCAACACATTTACAAAAACGTGTCCGATTATGGT
ACGATTACACGTACTCAAGGTAACGTACACGTTTTTTATAAGAACATCCA
AAATATTTGAAGCCTTCAGATGTTCTTAACTTTTTGAATTTTAAGCCTAA
AAATAATCTTAACATGTTCTAATTTTCGCCATTTTTTGAATATTTTTGTT
TATTTTCCTCAGAAATCGAAGCCTGGTGTTCTTATATAGTTTTTCCTTGT
ATAAAAAACATGTCATATTTCGCTCCAAGATTGGTACTCTCGCTAATTCG
AACTTCTATAATTTGAATATCTCTGTAATTCAAACGAATTAGATTTCCCG
TTCGAGTTCGATTTAGCGAGACCAAATTGGACTGTGAGAATGAGCAAATA
GAATGGAAGGAAAGAAACAGAACCGTAATATGAAAACACTACGATACTAT
AATACTACCACTGTTAACCCATAAATGAATATATCACTGAACAAATCTTG
ATGTCATGTTCCTGTAATCTAGGCTTTTGTCCAGGGGTCCGAAGAGGGAT
GTCTACAGGATTACCTTTATTATATCAAGAATTCGCTGGTGTAAACTAAA
CAACAAAGAATAATTCAGATTTTATATTTTTGCATTCACAGAGGACGTTT
CAATGGTGGAGACGACATTAATGAAATTACCATGCTTCCTGATAAAATGA
AAACGGAATTAGCTCTTCACGTTCATCTAGAAACTCTTAGAAAGGTATTC
CTTTGGATATTAATTTCAAGAAATATATTTGCACTATGCCTTTTACTAGA
CAAATTTACGATTTCAATTTAACCAAAGTTTTGTCACAGGCTGCAAAATT
ACAAGACCTCCTAAAGCACCATTAGAAAACTTTAAGGAAAAAGCAGTCAC
CTTTCCTGGGTTGTTTTTTATATGATTTACATCGTCAACTTTTTCTTTCA
TTACAGGTTTCATTCCTTCAAAAATGTCAACCGGAGTTTTTACATGATTT
GGTATTGAAAATGAAGCTTCATATTTTTACACCGGGTGATTTCATAATCA
GGAAAGGAGAAATTGCCAGAGAGATGTATGTTATTAGTGATGGTATGGCT
GAAGTGGTCAGGTAGGTTAAAATTAATACATACTCTTATATTATCGATAG
AAGCACGAAGTACAGAGTTTTTTTAGTATTGTTCAAATGAGATCTCAGTA
AATTTATGGTGAGCTTAAATTCATAATATTAAGATCAGAACATCAATGTC
TTAACCACAATGATATGATAGTTGGTGATTTGCTAATTATCATTTTGTTT
TTAGCGAAAGTGGACGAGTGTTGAAAGTGTTGCAAGCTGGCGATTTCTTT
GGTGAAATTGGATTACTTAGTCTAAGTGCTGGTCAAAACAGGTTAGTTGA
ATTTCATTTCATTGATATTTTTTCTTTCGAAAACATATTTTTCTATTGAC
GGAAAAATATTGCAAGAAGAAGTTATTTTAGTTTTGATTTAAAAAATACC
GAAAAGACGTGTTTTGTGCTGTTATGTCCATGAAAAAATCTCACTCAAGG
ATTTTTATTTCATTTAGGAGAACGGCAGACGTTCGGTCGTGCGGATACAT
CGAGTTATTTGTACTAAGCAAAGAAGATGTGATGTCATCTATACGAGATT
ACCCGGAAGCACAGCGTATCCTTGCCAAGCACGGCCGCAAACGGTTAGCG
CTCGGCTCTATAGTGGCAGCTGGACCACGTGATGAAACGACGTCAGGGAG
TAGCCAATCAGATAGCGAGATCGAATTAAAAATCACGCGGCCAGATTCCG
ACGAAGGATCGTGTCGTTCGTTATTCGAGAATGGAGATATTGAAAATAAT
AACACATCTACAGTGCGTAAAAATTCTCATACCAAAATTGATATCAAAGA
CGATAATGTCTTCACTGATCGAAAAGATGACGTCACTGAAACAGGATCTG
TCAATAAATATCTAACCTCGCCAAGAAATAGTATTTTTTTGGATACACCC
AATCATAAGTCACGCTCAATGGTTCATTTGAAACAACGTGCATCAGTGGT
TACTCACGGACACGGTAATGTTGTCGGACCTGCAACTTCTATAAAAAGCC
TTGATAAACGAACTTTAGAAAATTCGTTATCACAGAGTTTTTCAAGAAGG
TCGTCACCTCATCGGTCGGCCAGTCGGATCAGTCAGGTAAGTAAGACACC
CTCTCCAACAACAAACTTCACATCAGATTCAGGAGAAGAAAACAGTGACC
ACGAAAATCATCGCGATGAGAGTTTGGCGAAACGTTGGCTTAAACCACGC
ACAAAGAAACATATGCAACGTAGTAATTCCGATATGCAACGGCGTCCGAA
ACGAACATCAAACCGTAGCAAACGTTGCGTTTTTAGTGACGGGGAGAGTA
AGAATTATCATCATTGGAGTGAAATCATGAAAAGAGGATCTTCGGTTTCC
ACATGTAGTTACCACTCTGCCGGCGCCGCTAACCACACCACAACCACCAC
CACAAAACACCAACGCCACAGTGTAGCAACTACACCTACAGCCAAACATC
GAGATACGACCACCGATGAAGACCTGTTCTTAAGATCTATGAAAAAACTT
TATCTAGAGACCACCAAACATTTCAAGAAACGAACGGTACGTAGAATCCA
ATTTCATTTCAATTTGTATAACTTTCGCTTTGAATCTGAAATCACAAGTC
AAGAGCTACCTGAGACTTTAGTAATTGATTCATTTTACGGGCGAGGATTA
TACGCAAATTACACAAAAATCTTTTGATGGGAATGGTGATGGCTAACAGA
CATGTGCCATCCGACCTCTGGTACTCTGACTCAAAATTTTGAAAGTTAAA
CAATCCTTTCAATAAAAATTTGAACTGTTAAGAAGTCAAAAATTAAATCG
TTTCTATTTTCCAACCATAAGGGGTACTAAAATTAATTTTTCAAAGGTAC
TTCAAGGTCTAAAAAGGTGACANAACCTCGCCAAGAAATAGTATTTTTTT
GGATACACCCAATCATAAGTCACGCTCAATGGTTCATTTGAAACAACGTG
CATCAGTGGTTACTCATGGACACGGTAACGTTGTCGGACCTGCAACTTCT
ATAAAAAGCCTTGATAAACGAACTTTAGAAAATTCGTTATCACAGAGTTT
TTCAAGAAGGTCGTCACCTCATCGGTCGGCCAGTCGGATCAGTCAGGTCA
GTAAGACACCCTCTCCAACAACAAACTTCACATCAGATTCAGGAGAAGAA
AACAGTGACCACGAAAATCATCGCGATGAGAGTTTGACGAAACGTTGGCT
TAAACCACGCACAAAGAAACATATGCAACGTAGTAATTCCGATATGCAAC
GGCGTCCGAAACGAACATCAAACCGTAGCAAACGTTGCGTTTTTAGTGAC
GGGGAGAGTAAGAATTATCATCATTGGAGTGAAATCATGAAAAGAGGATC
TTCGGTTTCCACATGTAGTTACCACTCTGCCGGCGCCGCTAACCACACCA
CAACCACCACCACAAAACACCAACGCCACAGTGTAGCAACTACACCTACA
GCCAAACATCGAGATACGACCACCGATGAAGACCTGTTCTTAAGATCTAT
GAAAAAACTTTATCTAGAGACCACCAAACATTTCAAGAAACGAACGGTAC
GTAGAATCCAATTTCATTTCAATTTGTATAACTTTCGCTTTGAATCTGAA
ATCACAAGTCAAGAGCTACCTGAGACTTTAGTAATTGATTCATTTTACGG
GCGAGGATTATACGCAAATTACACAAAAATCTTTTGATGGGAATGGTGAT
GGCTAACAGACATGTGCCATCCGACCTCTGGTACTCTGACTCAAAATTTT
GAAAGTTAAACAATCCTTTCAATAAAAATTTGAACTGTTAAGAAGTCAAA
AATTAAATCGTTTCTATTTTCCAACCATAAGGGGTACTAAAATTAATTTT
TCAAAGGTACTTCAAGGTCTAAAAAGGTGACAAATTGAACTCCAGGGGAT
GCCATATTATTTATTTACCATATCATTTCTATCTTATCATTCCAGCATAC
GCAAGTTAAACGGTTGAAAAGAAAAATGTCAGATATGGAACAATCGTACT
TAGAAAGTTACTTAGCGAAAGAGAAGGAATGGTCGAATCGTGACGAACAA
TTAAGAAAAGAACTTTTTCGTTTGGAAGAACAAATGTATGATATGAAGGG
TAAAATGAAGGAAAAAGATGAAGAGATAAACAAATTATTGGGTGCTTCTG
ATACTTCAAATACAAATTCATTGGTCAAAAGTAACCATCTTGAAGCAATG
GTTGTTGAAGAGAAAAATCGCATCTTCACTCGTAATCATCATCGAGCGGT
AAGATGAAAGAAATAAAACCTTATTGCGCCAAAGTGGATTTTTTTACGCC
AACGGTCGAAGACCTACGCTAGCGGCCGAAAACTGAAGACGGCCGCTGGA
AACTGATCACACATTAAATATGTAGGTATTCGGCCGTTAGTGTAGGGTTT
CGGCCCCTTGAAAATCGGCCGCTAGCGTAGGTCGACGTCCGTTGACGGAA
AAAAAATTCGCAGCGCTGAAAAGTATGTTGCTGGAAGAAGAATGTCAGTC
TTCATTACTGTAACATCCCCCTTGCTTAAGCATTCTGGTGAAAATTAATT
TGGGTTATAAGTGAAAGGAAAGGCTGCTGGAATCCTCTAACAGATTTGTA
CTGCATGTAGTACCTGCAGTTTTGTAGGGATCTAGTCTATATTTTTCTAC
CAAAGCTTTTTGGTGAAAGTTAATTTGGGTTATAAGCGAAAGGAAAGGCT
GTTGGAACCTTCTAACGGATTTATATTCCTTTTAAAGGGATGTCAAAAAA
CGAGGACTTTCTGCTCAATAGTTGTTTTGAGGCTTTAAATTTACGGGGGC
GAAATAATTGAAATTTTTCCAATCGTTTTTTTTTAGATAAATATTTGATT
CGATGTGGCGAGAATGGAGACACGTGAAGGTTGGAGTGACAACACGGCAG
ATTGAAATCATCAGAAATGACGTCATTTAGTCTCAAAGATGACGTAATCA
TCCCAAACCGAACCAAAAACAATATATTTATTTATTTCGAATTGTAGATA
AACCCTTTCTATAAATAGAGTACAAATGTAAAGCAACGAGAAAAGAATCC
CATCACTTCTAATTTTGGACCCAAAC

Coding sequence (CDS) from alignment at scaffold_82:371240..378865-

>TCONS_00072732 ID=TCONS_00072732|Name=TCONS_00072732|organism=Clytia hemisphaerica|type=CDS|length=3261bp|location=Sequence derived from alignment at scaffold_82:371240..378865- (Clytia hemisphaerica)
ATGCAGTATCCACCGTCCAATATTGAGCTACCCTCCATCTCAATCGCCGA
CGAAAGCGATTTATATTACGACACTGACGGAAATGTCGAACGTAAAAAGA
AAAAATCATCATTGGCTAACAATAAGAAAATTCTATCACTTAATAATTTG
GCACATTGTCACACTTTAAAGGTCCCTAATTTATCTGATTGCAGTGATCA
GTCTGGTTCACTACCAAGCAGTTTGAATAAAGTGATGTCTTATAAGATTC
CTTGGTACAGACGTTTATACGATAACCGAACATCTTCATCTTCTTTTGAT
TGTATAGGGCGTGAATTCCGCAGCGAATCACACCGCCGTTGGAGTGTGGC
CACACAGAAGATCAAGAGTATCTTAGCAGTCAATGACGCTTTGAATGGAA
GCAAAACGAGAGCTCGCGACCGCGAACGAAGTATGTCCATCGAACAAAAA
TCACATTTCTTGGATAAATTCAGCACAACTAGAGACCGGCGATTTTCCGG
CGCAAGTTTCGACCTACGACGCCGACCGGATGGAAACCATTTAACTGACG
GAGCATCAAACATCAGTTCTGTTGAACTCAAAGAGCTGTTAAACGACATC
AAAGATTCAAAAACTAACGTTTCAAATTGTATCGATGATTTTCATGAGCA
AAGGCGATGTCGTTTCTTACATATACTATTTGAACCTTATAGCACCTTCA
TCTATATCTGGTCATGGATCGTCATACTGGCCATTCATTACAACACCTGG
GTTATCATTCTACGGATAGCCTTCCCTGCGGCACAACGCAATTACACCGG
TCTTTGGTTTTCACTGGACTACACAGCAGATTTGATATACATTATAGACG
TTCTAGTATCCTCCAGAATGTCTTTCCTGGAGAACGGGATATATGTAGAG
AGCGTAAAACGAGTTACAGTTAAATACTTTAAATCAACATTATTTATTTT
GGACTTGGTCAGCTTGCTACCGTTAGATCTCTTATATTTGTTCTTTCAAA
CCAACCCTGCATTTCGTATACCTAGGCTTATCAAATTTTTTAAAGTCTTC
CAAGGGAAAAAATTAGTGGAATCGATGACTAACTTTCCGAATTTGGTTCG
TGGTGTATTTTGGTTGCATATTATGTTTTTATTGATGCATTGGAATTGCT
GTTTCTTTTACATTATTTCGGAGATGGAAGGATTTGGTTCCAATAAGTGG
GTGTATCCAAAGCTAGAAGGATTACATCATATTTTGATCCACAGATACAT
CAAATGTATGTATTGGTCAACGCTAGTACTAACCACAATTGGTGAGGATA
GCACTCCAGAAACAACAGTGGAATGTGCGTACATGATCGTTTGCTATATC
ACTGGAATCTTCATATTCGCGACCATCGTTGGGCAAGCTGGAAATGTTAT
TCAAAATATGAACGCAAGCCGAATGGAGTTTGAAAGACAAAGGGATAACA
CAATGCAGTATATGAAAGAACACAACGTACCAACACATTTACAAAAACGT
GTCCGATTATGGTACGATTACACGTACTCAAGAGGACGTTTCAATGGTGG
AGACGACATTAATGAAATTACCATGCTTCCTGATAAAATGAAAACGGAAT
TAGCTCTTCACGTTCATCTAGAAACTCTTAGAAAGGTTTCATTCCTTCAA
AAATGTCAACCGGAGTTTTTACATGATTTGGTATTGAAAATGAAGCTTCA
TATTTTTACACCGGGTGATTTCATAATCAGGAAAGGAGAAATTGCCAGAG
AGATGTATGTTATTAGTGATGGTATGGCTGAAGTGGTCAGCGAAAGTGGA
CGAGTGTTGAAAGTGTTGCAAGCTGGCGATTTCTTTGGTGAAATTGGATT
ACTTAGTCTAAGTGCTGGTCAAAACAGGAGAACGGCAGACGTTCGGTCGT
GCGGATACATCGAGTTATTTGTACTAAGCAAAGAAGATGTGATGTCATCT
ATACGAGATTACCCGGAAGCACAGCGTATCCTTGCCAAGCACGGCCGCAA
ACGGTTAGCGCTCGGCTCTATAGTGGCAGCTGGACCACGTGATGAAACGA
CGTCAGGGAGTAGCCAATCAGATAGCGAGATCGAATTAAAAATCACGCGG
CCAGATTCCGACGAAGGATCGTGTCGTTCGTTATTCGAGAATGGAGATAT
TGAAAATAATAACACATCTACAGTGCGTAAAAATTCTCATACCAAAATTG
ATATCAAAGACGATAATGTCTTCACTGATCGAAAAGATGACGTCACTGAA
ACAGGATCTGTCAATAAATATCTAACCTCGCCAAGAAATAGTATTTTTTT
GGATACACCCAATCATAAGTCACGCTCAATGGTTCATTTGAAACAACGTG
CATCAGTGGTTACTCACGGACACGGTAATGTTGTCGGACCTGCAACTTCT
ATAAAAAGCCTTGATAAACGAACTTTAGAAAATTCGTTATCACAGAGTTT
TTCAAGAAGGTCGTCACCTCATCGGTCGGCCAGTCGGATCAGTCAGGTAA
GTAAGACACCCTCTCCAACAACAAACTTCACATCAGATTCAGGAGAAGAA
AACAGTGACCACGAAAATCATCGCGATGAGAGTTTGGCGAAACGTTGGCT
TAAACCACGCACAAAGAAACATATGCAACGTAGTAATTCCGATATGCAAC
GGCGTCCGAAACGAACATCAAACCGTAGCAAACGTTGCGTTTTTAGTGAC
GGGGAGAGTAAGAATTATCATCATTGGAGTGAAATCATGAAAAGAGGATC
TTCGGTTTCCACATGTAGTTACCACTCTGCCGGCGCCGCTAACCACACCA
CAACCACCACCACAAAACACCAACGCCACAGTGTAGCAACTACACCTACA
GCCAAACATCGAGATACGACCACCGATGAAGACCTGTTCTTAAGATCTAT
GAAAAAACTTTATCTAGAGACCACCAAACATTTCAAGAAACGAACGCATA
CGCAAGTTAAACGGTTGAAAAGAAAAATGTCAGATATGGAACAATCGTAC
TTAGAAAGTTACTTAGCGAAAGAGAAGGAATGGTCGAATCGTGACGAACA
ATTAAGAAAAGAACTTTTTCGTTTGGAAGAACAAATGTATGATATGAAGG
GTAAAATGAAGGAAAAAGATGAAGAGATAAACAAATTATTGGGTGCTTCT
GATACTTCAAATACAAATTCATTGGTCAAAAGTAACCATCTTGAAGCAAT
GGTTGTTGAAGAGAAAAATCGCATCTTCACTCGTAATCATCATCGAGCGA
TAAATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045142XLOC_045142Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072732-proteinTCONS_00072732-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072732-exon-scaffold_82-1575043694:377489..378865TCONS_00072732-exon-scaffold_82-1575043694:377489..378865Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:377185..377243TCONS_00072732-exon-scaffold_82-1575043694:377185..377243Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:376900..376961TCONS_00072732-exon-scaffold_82-1575043694:376900..376961Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:376347..376435TCONS_00072732-exon-scaffold_82-1575043694:376347..376435Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:375672..375774TCONS_00072732-exon-scaffold_82-1575043694:375672..375774Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:375305..375459TCONS_00072732-exon-scaffold_82-1575043694:375305..375459Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:375025..375111TCONS_00072732-exon-scaffold_82-1575043694:375025..375111Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:373780..374848TCONS_00072732-exon-scaffold_82-1575043694:373780..374848Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:372068..372370TCONS_00072732-exon-scaffold_82-1575043694:372068..372370Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1575043694:371240..371479TCONS_00072732-exon-scaffold_82-1575043694:371240..371479Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:377489..378865TCONS_00072732-exon-scaffold_82-1510915933:377489..378865Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:377185..377243TCONS_00072732-exon-scaffold_82-1510915933:377185..377243Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:376900..376961TCONS_00072732-exon-scaffold_82-1510915933:376900..376961Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:376347..376435TCONS_00072732-exon-scaffold_82-1510915933:376347..376435Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:375672..375774TCONS_00072732-exon-scaffold_82-1510915933:375672..375774Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:375305..375459TCONS_00072732-exon-scaffold_82-1510915933:375305..375459Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:375025..375111TCONS_00072732-exon-scaffold_82-1510915933:375025..375111Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:373780..374848TCONS_00072732-exon-scaffold_82-1510915933:373780..374848Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:372068..372370TCONS_00072732-exon-scaffold_82-1510915933:372068..372370Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1510915933:371240..371479TCONS_00072732-exon-scaffold_82-1510915933:371240..371479Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:377489..378865TCONS_00072732-exon-scaffold_82-1491911889:377489..378865Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:377185..377243TCONS_00072732-exon-scaffold_82-1491911889:377185..377243Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:376900..376961TCONS_00072732-exon-scaffold_82-1491911889:376900..376961Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:376347..376435TCONS_00072732-exon-scaffold_82-1491911889:376347..376435Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:375672..375774TCONS_00072732-exon-scaffold_82-1491911889:375672..375774Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:375305..375459TCONS_00072732-exon-scaffold_82-1491911889:375305..375459Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:375025..375111TCONS_00072732-exon-scaffold_82-1491911889:375025..375111Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:373780..374848TCONS_00072732-exon-scaffold_82-1491911889:373780..374848Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:372068..372370TCONS_00072732-exon-scaffold_82-1491911889:372068..372370Clytia hemisphaericaexon
TCONS_00072732-exon-scaffold_82-1491911889:371240..371479TCONS_00072732-exon-scaffold_82-1491911889:371240..371479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:371240..378865 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182483	0.103804	0.413233	0.539583	0.358649	0.192718	0.868084	0.970075	0.776047	0.879043	0.459437	0.774935	2.41083	2.24769	0.103975	0.1112	1.22523	1.7249	5.08573	7.14554	3.10897	3.02747	0.626749	1.04887	1.58372	1.63072	3.30739	3.3765	0.033757	0.0240597
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR005821Ion_trans_dom
IPR014710RmlC-like_jellyroll
IPR018488cNMP-bd_CS
IPR018490cNMP-bd-like
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00072732 vs. Swiss-Prot (Human)
Match: CNGA3 (Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.756e-108
Identity = 202/516 (39.15%), Postives = 314/516 (60.85%), Query Frame = 2 
Query:  728 ILFEPYSTFIYIWSWIVILAIHYNTWVIILRIAFPAAQRNYTGLWFSLDYTADLIYIIDVLVSSRMSFLENGIYVESVKRVTVKYFKSTXXXXXXXXXXXXXXXXXXXQTN-PAFRIPRLIKFFKVFQGKKLVESMTNFPNLVR-GVFWLHIMFLLMHWNCCFFYIISEMEGFGSNKWVYPKLEGLHHILIHR-YIKCMYWSTLVLTTIGEDSTPETTVECAYMIVCYITGIFIFATIVGQAGNVIQNMNASRMEFERQRDNTMQYMKEHNVPTHLQKRVRLWYDYTYSRGRFNGGDDINEITMLPDKMKTELALHVHLETLRKVSFLQKCQPEFLHDLVLKMKLHIFTPGDFIIRKGEIAREMYVISDGMAEVVSESGRV-LKVLQAGDFFGEIGLLSLSAGQ--NRRTADVRSCGYIELFVLSKEDVMSSIRDYPEAQRILAKHGRKRLALGSIVAAGPRDETTSGSSQSDSEIELKITRPDSDEGSCRSLFENGDIENNNTSTVRKNSHTKID 2257
            I+ +P S   Y W   + L + YN +++I R  F   Q  Y  LW  LDY+AD++Y++DVLV +R  FLE G+ V    R+   Y  +T F LD++SL+P DL YL   TN P  R  RL+KF ++F+     E+ TN+PN+ R G   L+I+ +++HWN C ++ IS+  GFG++ WVYP +    H  + R YI  +YWSTL LTTIGE   P    E  +++V ++ G+ IFATIVG  G++I NMNASR EF+ + D+  QYM+   V   L+ RV  W+DY ++  +    D+   +  LPDK+K E+A++VHL+TL+KV   Q C+   L +LVLK++  +F+PGD+I +KG+I +EMY+I++G   VV++ G     VL  G +FGEI +L++   +  NRRTA++RS GY +LF LSK+D+M ++ +YPEA++ L + GR+ L   +++     DE  + +     ++E K+ +  S   + ++ F     E N T    K   ++++
Sbjct:  159 IVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSADVLYVLDVLVRARTGFLEQGLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRLFEFFDRTETRTNYPNMFRIGNLVLYIL-IIIHWNACIYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKK--TVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLI-----DEELARAGADPKDLEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 666
The following BLAST results are available for this feature:
BLAST of TCONS_00072732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNGA31.756e-10839.15Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]
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