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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007694 ID=TCONS_00007694|Name=TCONS_00007694|organism=Clytia hemisphaerica|type=transcript|length=1738bp
aaagaaattttgaagatagaaaatttcactttttggaaAGGAAATGCTCT
CTCTTTTTGCTAAcatgtgattttttgacttaaaaacatCATGGTGTGCT
TTTACGGATTGCCTGTATTACTGATTGCAAGCTGTTGGTTGACCAGCGTA
AAAGCCAATTTCAATATCAATACCACATTTGCCACGACCTCCATCTCCAA
TACTACATTTCGGattaaaacacaaaaatataaaaaactcaACAACACAA
TATTCAATTCAACCAAAATTGATTGGATATACTTAGCACCAGAAGCCGTC
CGTCTGCCATTGGTGGAATGTGGAAAATTATGCCAAGAAACTACAGATTG
TTGTGGTTTCTTTTATGTCAATGGTGACAACAGTATTATGAATGAACCAC
CCGCCAATCACACCAATGAAACATATCCGAATTGCTATTTGAACGATATG
GCTTTACCAAGATCTAAAACAGCTGTTTCACCAAATGTTGATTATTATGA
AATCAAGAATCAATGTACAAAAACATCTACCAACCCTTGCGCCAAAGGTG
ATTGTATTCCCAACTTTCAAACCGATTCCTTTTCATGCGATTGTTCGACC
GCTGGTCTGGTCAATTTTAATGAAACTGTTTGTGCTACTAAAACTACCTt
TCAACCACTTGATCTCAAACAAATGATCCTGACTAATAACCAATGCTATT
CCTTGAATAACACAAACGATACTTTATTcatcttttggaaaaaagtgcAA
ACCACCGATAACTTTTACTCAGAAACAACTGCAGGTATGCAGTTCGATGC
AAGCATAATTACAAAGCAAGATACCATTTTGAAAGCCACATTGAAACTTG
TTTCAAAAAAAGCAGTTGAcggtcaaaaaatgaaaatagaagCTATTCGA
GAAAATCTGTCACATAACGACAATGCTGGTTGCAATGACTATCTGTATCG
ATCTGGATACAAAACTGAGCTTGATACCGGATTCATAGATGCAGAAGAAA
CCTTCAACATTGATCTTACCAATATGGTGAGATTAATGTTCCAGCACAAT
GATTTTGATGGAAAATACTTTCATTTCTGGACACATCCTGAGTTTCTTAC
TCAAAGCGGACAATCAACTCTGGCATTTGGTTTTGAAATGTATGGGTTTG
AGAATGAAAATAAACAACcaacttttgagattttttggcAAGAACAAGAG
CAAGTACCACAAATTGAAAAATAGCTCCATATTGAAACATTTGAATTTTC
CAAATTCTCCTTTTTGCCTAGAAAAACTACACGATAAGTAATACTACGTA
ACTTACGTATAAGcagtttcttcatttttttctgttttacatATTTGCTG
CTTCAACATCTTAAGTTTTCTACGTATAAGCAATATGCGGCTTGAGtaca
ggctcggatacagagggaggctataaccaatggaggagagtgcactttat
tatcgtattaccttatatggaaactaattactctccatgaataagatagc
ctacctcctgtatccgaccctggaGTAGTACTACTTTTCTTCGGTTCCTT
TAACTTCCTTACCCTTTTGAGATTCGAATAAGATGTATACAGCTAATTAG
TATCCTTTTTCACCGCTCCCCTGAGAGTACCAGTCATCGCCTGGTCTATA
TTGGAGGACAGCATTAAACTACCGTTGTTAACAATTTTAGGGATTTTTTT
CTATAGGTCCATTTCAATCAAAACGAAAAACATTTtca Run BLAST on NCBI protein sequence of TCONS_00007694-protein >TCONS_00007694-protein ID=TCONS_00007694-protein|Name=TCONS_00007694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MVCFYGLPVLLIASCWLTSVKANFNINTTFATTSISNTTFRIKTQKYKKL
NNTIFNSTKIDWIYLAPEAVRLPLVECGKLCQETTDCCGFFYVNGDNSIM
NEPPANHTNETYPNCYLNDMALPRSKTAVSPNVDYYEIKNQCTKTSTNPC
AKGDCIPNFQTDSFSCDCSTAGLVNFNETVCATKTTFQPLDLKQMILTNN
QCYSLNNTNDTLFIFWKKVQTTDNFYSETTAGMQFDASIITKQDTILKAT
LKLVSKKAVDGQKMKIEAIRENLSHNDNAGCNDYLYRSGYKTELDTGFID
AEETFNIDLTNMVRLMFQHNDFDGKYFHFWTHPEFLTQSGQSTLAFGFEM
YGFENENKQPTFEIFWQEQEQVPQIEK Run BLAST on NCBI transcript from alignment at sc0000079:93504..99245+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007694 ID=TCONS_00007694|Name=TCONS_00007694|organism=Clytia hemisphaerica|type=transcript|length=5742bp|location=Sequence derived from alignment at sc0000079:93504..99245+ (Clytia hemisphaerica)
aaagaaattttgaagatagaaaatttcactttttggaaAGGAAATGCTCT
CTCTTTTTGCTAAcatgtgattttttgacttaaaaacatCATGGTGTGCT
TTTACGGATTGCCTGTATTACTGATTGCAAGCTGTTGGTTGACCAGCGTA
AAAGCCAATTTCAATATCAATACCACATTTGCCACGACCTCCATCTCCAA
TACTACATTTCGGattaaaacacaaaaatataaaaaactcaACAACACAA
TATTCAATTCAACCAAAATTGATTGGATATACTTAGCACCAGAAGCCGTC
CGTCTGCCATTGGTGGAATGTGGAAAATTATGCCAAGAAACTACAGATTG
TTGTGGTTTCTTTTATGTCAATGGTGACAACAGTATTATGAATGAACCAC
CCGCCAATCACACCAATGAAACATATCCGAATTGCTATTTGAACGATATG
GCTTTACCAAGATCTAAAACAGCTGTTTCACCAAATGTTGATTATTATGA
AATCAAGGTAATTTAAATAAGGTGCCGTAGTATAGgggtagtcgaccttg
gcttctgtgcaggtgGCCacggttcgattcccactcacggcagttcactt
ggcaagtgaacgttccttcgcccgggtcaacccatgccatgtgaggggaa
ttgggtagtcagttcaaggtgctgactcattagtaagcgtctatagttgc
gagaataggcctctaaagcctcctgcaactcaaccaaatagaaatagaaa
ttctaatagaccttatcggagtttttgatttttctaaaaaaaagcgATGC
ATAGGGGGCTGTTTCGGGAgaattacaatagaatttcctcaaggaattcc
taagagatttctattataatagctcccgaaacaatcccacaatgcattgc
ttttttagaaaaatcaaaaactccgataagatctattgttGTAAGAATAA
TTTTTACCCGTTGGCTCAAAACACCAATAAATAAGAGCAGTTTAAGAATA
ACTCTAAACCCAACGCTCGTACCCGGAGCCACTTGCACCAATTTTTGAGT
TTACTGATAAACGTGATACGTAATCTTgtgcgctatcagaatcataaaaa
gtgAACTGAGTGACTGGGTTCAAGTTTAGCCCAAtattaataaattttca
aaaaaaataataatcagATTTGCAGAAAGaggatattcatgatattcgaG
ACGTAATGTTTTTACGGAAAGatcccggtttttgccagtagtggaaAATT
TTGTACAACTTTTGTCTATTTTAAATTTGCCACCACTGGCAACCGGgata
tttccgtagaaaacattactccaaccaatcctggaaatatcttgaaaata
ttatatttccatatacatttttaaatatggaaatatgacttttctatatt
tccaaatttgagaatatatcatattttatgatattTCCAAATCCGAAACA
TCATATTGTCAAAACATTTCTAACTTTTGGAatcaccggggacgattttt
tggcctatttttccagcGGGGTGGAGGGTCCACCGGATCTgagacacagg
ggtgttaattATCCCCCTTCCCAAACTTGAATTATTTACCCTGgcattta
aatttcatttttcattttacagAATCAATGTACAAAAACATCTACCAACC
CTTGCGCCAAAGGTGATTGTATTCCCAACTTTCAAACCGATTCCTTTTCA
TGCGATTGTTCGACCGCTGGTCTGGTCAATTTTAATGAAACTGTTTGTGC
TACTAAAACTACCTGTAAGTTTTCAttgctttcaattttcaacGAGCATA
AAGATTCCATTTTACAATTCTTCTCATGCAATAGCACACCGTGCTGAATC
TTAAATAGTAGCAAAATCAGCACAAATTTATTCGTTTGTACGACACTTGC
AATCCAATCCTCTTTTGCGTTAATTACTCTTGTACGttaataacttttaa
aatatcactagccataactttcattaaggtgccaccgcagcaaaacgaac
acatagagttgaatttgccttcaaaaggaatgatcttagccctacagtaa
tttttgttaagagtgacctctcatctgagacaaaattctttcaaatgcta
aaaaatgtgTCAATGTGTccagggagtgatttacagtctacttagagtga
catccgtgccttgtcttacacgtttttgtataagaacaatttcataagaa
tacgaggctgaaatttggctaaaacctaagaacaaattaagaagaatttg
agcctcagatttcagaaattactgagaagtacaggtTTCCAATTTCATTA
GTAttgacatttaagcctgaaaaactcaaataaaatcaagcgcagcccag
ccagaatcatatgacttactggtttttcctataaaaagcgtatatctgaa
gatactgctcttcatatgttattttactaatgtacacgtttaacATCATA
ACTGTTCGTATACATGAGTCTGtggagtaatatttttaacctatgaagag
caCTTAAtttaactacttgtggtataaaaagggaatttcccagaaaaggg
aatttccttagattcattaactctccagggataagaaaaagacaaactga
gatttcaaaatgagtaatcagatcaaaataactccggaaaagtctttttg
atgatgataaaacaatagagagaccgtaagataagaatgctaccgttaag
cggaactaaaatactgaaaaacgcgcgcaaaattatgagatgtttgccca
acttccttatgcgtgaagctatgaatgccatcctcggtcgctttaggctc
cctgcggtggcaaaaaATTTCATGGCTTTCCAATTCGAAATAGATATATC
TGTACGGGATTAGAACTCATACCAAgtatttattatacactggatataca
agtacctGGTTTATGCTGATTTCTGTTCCAGCTATCATTTCACTAAATAT
ATTATCAGCCTAATAGGAACAATTTTGAATtgcttttttcacaatttttc
tttGGGAGGTCTCGTCATCTGTAAACCCTAGTGCCCCCGGATCAAACCGC
TGGGAACCTTATAATACGGAAAACAGGcagtaatatttcttttttgccaa
ttttttcttatttcagtTCAACCACTTGATCTCAAACAAATGATCCTGAC
TAATAACCAATGCTATTCCTTGAATAACACAAACGATACTTTATTcatct
tttggaaaaaagtgcAAACCACCGATAACTTTTACTCAGAAACAACTGCA
GGTATCTACaaggtgtccctaattaaagtatcgagtcgaaacacaactat
gagtagaaagttttatgtgcgtgttcacaaaattgtattttaagctctcc
ctctcttttctttgtcattacgattaatttataggttgtaactacctttt
gtaataagcctgtgtgatggagaacgttcttatattttagcgataacaca
cacaaacttttctactcaatcgcatgttcaaactcgatactttaattagg
gacaccctgtatactCAACGCTCTCTAAtgcacgggttgcaaaattatat
caatgcagtcaaaacatatGATTACTCGAAAATGTTCACGTGATTATTTT
ATTCCCGTGATatttgctttacaacttacagctgatatcTTATTAGTGTc
aaataaattcgaaccaatcagaaatgaATGTCATgcaacaagcacataaa
aattttgattaaactaagcgtgatttgtcttcagactttaattttgcaac
ctgtatATTCTAAGTTCTGGTATTCGATACGATCCATTATTTGATAGTAT
TGAAAACGAGAAACTCTAATAAAGGACGTTTTACAGTTCGACACGCTTCC
TAATTCAATGCCCCCAGcagtttgcgtgattgcgtgaatgggcattttcg
gttgcatgaatgcgtgaaaattgaagaaaaaatgcgtgaatgcgtgaatt
gaaaaacttgcgtgaacgtgaaaatgtactttttgattgcgtgaatgcgt
gaatgcgtgaatctgggctattttgtgcgtgaatacgtgaattttccctt
ttttccaccgattatgtgcagttttcccgattttccaatgtttccccgac
ttttcccaaaaaattttccgatttctgaaaaattgggttattgagtgaaa
ctcgaggaaaattttcgtgaatgcgtgaatttcgaaaaaaaattgcacga
ttgcgtgaattgagggtccgctgggggggggcctcTTCAATGGAAATCCA
CTTGCCCTTGAATCGAATCAATGATGACTGCATACCTGTTTCTATGTTGA
GCAGTCTTGGTCGGTGATGACCATGTTGAACGGTAAAAAAGAATGCAGCT
ATTATATATTTTATTATGAATTTTTAGGTCGATGATGACTAGGTGcaccc
aactggcacacaacgttgtttcaacgttcacctaacgtaatatggacgtt
gtgaacgtttgataaacgtcgaaaaaacgttgtatgCCAGCTGGGCAGTC
TAGATGTCGTCTTATTAGAACTGTTTTGGATACTGTACAGCTGTTtacct
gaaggtaggggagggcgcaaCTCCTTTCCCTAGATTTTCCCAATTATCCT
TGATCCGtatctttagttgctgagcatcaagcagagaggcatggATCAAG
GTTatcattttggaaatctttggtatgaccggCTGGGGATTGAATGCACA
ACCTTgagcaccgtagctggatgctctaccttcatgctacggtcatGATC
ATGATTGTAGCATCGTTCATGTATTCATTGCTTTTTAGGTATGCAGTTCG
ATGCAAGCATAATTACAAAGCAAGATACCATTTTGAAAGCCACATTGAAA
CTTGTTTCAAAAAAAGCAGTTGAcggtcaaaaaatgaaaatagaagCTAT
TCGAGAAAATCTGTCACATAACGACAATGCTGGTTGCAATGACTATCTGT
ATCGATCTGGATACAAAACTGAGCTTGATACCGGATTCATAGATGCAGAA
GAAACCTTCAACATTGATCTTACCAATATGGTGAGATTAATGTTCCAGCA
CAATGATTTTGATGGAAAATACTTTCATTTCTGGACACATCCTGAGTTTC
TTACTCAAAGCGGACAATCAACTCTGGCATTTGGTTTTGAAATGTATGGG
TTTGAGAATGAAAATAAACAACcaacttttgagattttttggcAAGAACA
AGAGCAAGTACCACAAATTGAAAAATAGCTCCATATTGAAACATTTGAAT
TTTCCAAATTCTCCTTTTTGCCTAGAAAAACTACACGATAAGTAATACTA
CGTAACTTACGTATAAGcagtttcttcatttttttctgttttacatATTT
GCTGCTTCAACATCTTAAGTTTTCTACGTATAAGCAATATGCGGCTTGAG
tacaggctcggatacagagggaggctataaccaatggaggagagtgcact
ttattatcgtattaccttatatggaaactaattactctccatgaataaga
tagcctacctcctgtatccgaccctggaGTAGTACTACTTTTCTTCGGTT
CCTTTAACTTCCTTACCCTTTTGAGATTCGAATAAGATGTATACAGCTAA
TTAGTATCCTTTTTCACCGCTCCCCTGAGAGTACCAGTCATCGCCTGGTC
TATATTGGAGGACAGCATTAAACTACCGTTGTTAACAATTTTAGGGATTT
TTTTCTATAGGTCCATTTCAATCAAAACGAAAAACATTTtca Coding sequence (CDS) from alignment at sc0000079:93504..99245+ >TCONS_00007694 ID=TCONS_00007694|Name=TCONS_00007694|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000079:93504..99245+ (Clytia hemisphaerica)
ATGGTGTGCTTTTACGGATTGCCTGTATTACTGATTGCAAGCTGTTGGTT
GACCAGCGTAAAAGCCAATTTCAATATCAATACCACATTTGCCACGACCT
CCATCTCCAATACTACATTTCGGattaaaacacaaaaatataaaaaactc
aACAACACAATATTCAATTCAACCAAAATTGATTGGATATACTTAGCACC
AGAAGCCGTCCGTCTGCCATTGGTGGAATGTGGAAAATTATGCCAAGAAA
CTACAGATTGTTGTGGTTTCTTTTATGTCAATGGTGACAACAGTATTATG
AATGAACCACCCGCCAATCACACCAATGAAACATATCCGAATTGCTATTT
GAACGATATGGCTTTACCAAGATCTAAAACAGCTGTTTCACCAAATGTTG
ATTATTATGAAATCAAGAATCAATGTACAAAAACATCTACCAACCCTTGC
GCCAAAGGTGATTGTATTCCCAACTTTCAAACCGATTCCTTTTCATGCGA
TTGTTCGACCGCTGGTCTGGTCAATTTTAATGAAACTGTTTGTGCTACTA
AAACTACCTtTCAACCACTTGATCTCAAACAAATGATCCTGACTAATAAC
CAATGCTATTCCTTGAATAACACAAACGATACTTTATTcatcttttggaa
aaaagtgcAAACCACCGATAACTTTTACTCAGAAACAACTGCAGGTATGC
AGTTCGATGCAAGCATAATTACAAAGCAAGATACCATTTTGAAAGCCACA
TTGAAACTTGTTTCAAAAAAAGCAGTTGAcggtcaaaaaatgaaaataga
agCTATTCGAGAAAATCTGTCACATAACGACAATGCTGGTTGCAATGACT
ATCTGTATCGATCTGGATACAAAACTGAGCTTGATACCGGATTCATAGAT
GCAGAAGAAACCTTCAACATTGATCTTACCAATATGGTGAGATTAATGTT
CCAGCACAATGATTTTGATGGAAAATACTTTCATTTCTGGACACATCCTG
AGTTTCTTACTCAAAGCGGACAATCAACTCTGGCATTTGGTTTTGAAATG
TATGGGTTTGAGAATGAAAATAAACAACcaacttttgagattttttggcA
AGAACAAGAGCAAGTACCACAAATTGAAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007694-exon-sc0000079-1491911889:93504..94010 | TCONS_00007694-exon-sc0000079-1491911889:93504..94010 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1510915933:93504..94010 | TCONS_00007694-exon-sc0000079-1510915933:93504..94010 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1575043694:93504..94010 | TCONS_00007694-exon-sc0000079-1575043694:93504..94010 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1491911889:95126..95267 | TCONS_00007694-exon-sc0000079-1491911889:95126..95267 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1510915933:95126..95267 | TCONS_00007694-exon-sc0000079-1510915933:95126..95267 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1575043694:95126..95267 | TCONS_00007694-exon-sc0000079-1575043694:95126..95267 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1491911889:96620..96754 | TCONS_00007694-exon-sc0000079-1491911889:96620..96754 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1510915933:96620..96754 | TCONS_00007694-exon-sc0000079-1510915933:96620..96754 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1575043694:96620..96754 | TCONS_00007694-exon-sc0000079-1575043694:96620..96754 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1491911889:98292..99245 | TCONS_00007694-exon-sc0000079-1491911889:98292..99245 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1510915933:98292..99245 | TCONS_00007694-exon-sc0000079-1510915933:98292..99245 | Clytia hemisphaerica | exon |
| TCONS_00007694-exon-sc0000079-1575043694:98292..99245 | TCONS_00007694-exon-sc0000079-1575043694:98292..99245 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000079 | supercontig | sc0000079:93504..99245 + |
Blast
The following BLAST results are available for this feature:
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