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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007935 ID=TCONS_00007935|Name=TCONS_00007935|organism=Clytia hemisphaerica|type=transcript|length=4454bpRun BLAST on NCBI protein sequence of TCONS_00007935-protein >TCONS_00007935-protein ID=TCONS_00007935-protein|Name=TCONS_00007935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1376bp MEKLLYTLLITILYFPVVQSRCGCHRVPGQGFLPSRDSMVNHNFEALPHTRun BLAST on NCBI transcript from alignment at sc0000080:563056..579630- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007935 ID=TCONS_00007935|Name=TCONS_00007935|organism=Clytia hemisphaerica|type=transcript|length=16575bp|location=Sequence derived from alignment at sc0000080:563056..579630- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:563056..579630- >TCONS_00007935 ID=TCONS_00007935|Name=TCONS_00007935|organism=Clytia hemisphaerica|type=CDS|length=111456bp|location=Sequence derived from alignment at sc0000080:563056..579630- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007935 vs. Swiss-Prot (Human)
Match: TM131 (Transmembrane protein 131 OS=Homo sapiens GN=TMEM131 PE=1 SV=3) HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0 Identity = 403/1119 (36.01%), Postives = 633/1119 (56.57%), Query Frame = 2
Query: 494 GPSSNQHYSVP----NFRVLLFQPTFLDFQEQPVGMPYVQSIVLSNPSDQNDIEITDVN-TLPPFHSTKFSKKVLPPLTNMTVDLVFLATMVGNIEHTVYLHTS-RGNFPYQVFAVGTPNPYRLRAFVSAKMPANGTFTQYINMYNPYSEPLQLTEMYSSGKDLHLDLLGNNVNGTVGKHWEIPPYEMKAVMKATFYSQGEGISNRFVRVKLGAPASPADVVIIPFEMVISNKPGLFTNVDVLDFGTLRTMDEPKSLNLNVLNVGNKSVQILSIQVIPPNRAVTVQFTPMVLKTSK-KYTKIATVTYTAIHSSHKKQNSGKLVIYTSDEK-KQLEVPYHTNILHGTLAYSINKTSFYAADSPTTQV---LMITNTFNSTLVIYNATLPPETKDIFSIVNFSPAIMVPPGKLVSPLSINFHANNSMLSLSTILRLYTNASIFTIPVHCYNGKLQYEV--NNVNKNVLDYGTVGVQEQRSLTFRIINNNPVEVSIKEFGTQFEFARLRLMHVSNSKSTAEQQKLQNSLNETLKSKIEKDENGEEKLILKSSDVATFEVDIVAPEKEGTYHGQVLLKTLYETIKIPIFMKTVEGTLXXXXXXXXXXXXFPGRIENYPLSIESTFKYGISLQNLSVYPEDPRFFFIKPDFLPQ-LPPGEKTHIGWVKFDPFRGDVDQCFLCVCEIDPACDHWFHSLPLPSDTWELDFNLLEKLRRKWDLVESKKDSNFNASIIIDSSVIKNYLIPIQASLSWPTLVE--QSIKFPSTYVGNFTTADMYITNPSDXXXXXXXXXXXXXXXXEGGLDLLSDRLIVDSFS-LDLNGHSLFTLSDLQSGEHTNSKVASALGINPSPNS---LSMVLEPRQRRAVTIGFTPQDEVPKTSIMVVRNNLTILDLVVVHGQGAKTNFKINGKPPGGKSSVLLFQIKADHLKDCNKSTPKARVYPSFTVKGSFTATNAGQLPVEVASMNINNYECEGYGFRILNCEPFMLMPNASRKIDITFIPDFTTSRVTRNLRVLTTMGQALDFXXXXXXXXXXXXXXXSALPRPYWEPYLHIVTAIVMSTXXXXXXXXAYFDAQK----YVVQCTFTAGGLSNRTHGKDNMDIYTAGTVFDLNAIAGV 3778
G SS Q S+ N R + F+P LDF EQPVGMP ++ + L NPS + I + ++ T FH++ F + + P N + D+VFLA +VGN+E+T++++TS G F YQVF VG PNPYRLR F+ A++P N +F+ IN++NP+SEPLQ+ EMYSSG DLHL+L GT K WEIPPYE K VM+A+F S+ F+R+K A S + +I+P E+ ++ PG++++ ++LDFGTLRT D PK LNL++LN G K V I S++ P N A+TV F P+ LK S+ KYTK+A++++ A + Q SGK+ + ++ +LE+PY +L G L + T F+ DSP V + +TNTF+ ++I++ LP E K +F + NFS +++ P + ++ F + S + + + L TNAS F +PV Y G L Y V + + +D+G + E ++ F IIN+NP+E++IK + + + L+ V T + +SL E KS + + + + L S A F V + A + EG + G + + T YE + IP+ G+L PK + + +FPG+I + L+I ++F + +Q + ED RF++ + + L PG+K+ I + FDP D C++ + + + + + D W+ D++L + L + W ++ +A +++ + KN + I A LSWP+++ + +KFP T + ++ + NP+D P+ VQ +PL Y P +D L R + + +DL TL + Q ++ + S+ G + L+++L+P ++++V + FTP +S+++VRNNLT++D V+V GQG N ++ GK PG SS L F+I LKDC S K R P+FT+K +F N GQL + + ++ I+ Y CEGYGF+++NC+ F L NASR I I F PDFT SRV R L+ +TT G F L A+LP+H+L CA ALPRP WE L+I+ + +MS +F+ +I AY +AQ + + +F A SN + G FDL I G+
Sbjct: 89 GLSSYQQKSISLYRGNCRPIRFEPPMLDFHEQPVGMPKMEKVYLHNPSSEETITLVSISATTSHFHASFFQNRKILPGGNTSFDVVFLARVVGNVENTLFINTSNHGVFTYQVFGVGVPNPYRLRPFLGARVPVNSSFSPIINIHNPHSEPLQVVEMYSSGGDLHLELPTGQQGGTR-KLWEIPPYETKGVMRASFSSREADNHTAFIRIKTNASDS-TEFIILPVEVEVTTAPGIYSSTEMLDFGTLRTQDLPKVLNLHLLNSGTKDVPITSVRPTPQNDAITVHFKPITLKASESKYTKVASISFDASKAKKPSQFSGKITVKAKEKSYSKLEIPYQAEVLDGYLGFDHAATLFHIRDSPADPVERPIYLTNTFSFAILIHDVLLPEEAKTMFKVHNFSKPVLILPNESGYIFTLLFMPSTSSMHIDNNILLITNASKFHLPVRVYTGFLDYFVLPPKIEERFIDFGVLSATEASNILFAIINSNPIELAIKSWHIIGDGLSIELVAVERGNRTT----IISSLPEFEKSSL----SDQSSVTLASGYFAVFRVKLTAKKLEGIHDGAIQITTDYEILTIPVKAVIAVGSLTCFPKHVVLPPSFPGKIVHQSLNIMNSFSQKVKIQQIRSLSEDVRFYYKRLRGNKEDLEPGKKSKIANIYFDPGLQCGDHCYVGLPFLSKSEPKVQPGVAMQEDMWDADWDLHQSLFKGWTGIKENSGHRLSAIFEVNTDLQKNIISKITAELSWPSILSSPRHLKFPLTNTNCSSEEEITLENPADVPVYVQFIPLALYSNPSVFVDKLVSRFNLSKVAKIDLR-----TL-EFQVFRNSAHPLQSSTGFMEGLSRHLILNLILKPGEKKSVKVKFTPVHNRTVSSLIIVRNNLTVMDAVMVQGQGTTENLRVAGKLPGPGSS-LRFKITEALLKDCTDSL-KLR-EPNFTLKRTFKVENTGQLQIHIETIEISGYSCEGYGFKVVNCQEFTLSANASRDIIILFTPDFTASRVIRELKFITTSGSEFVFILNASLPYHMLATCAEALPRPNWELALYIIISGIMSALFLLVIGTAYLEAQGIWEPFRRRLSFEA---SNPP--------FDVGRPFDLRRIVGI 1177 The following BLAST results are available for this feature:
BLAST of TCONS_00007935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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