|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008832 ID=TCONS_00008832|Name=TCONS_00008832|organism=Clytia hemisphaerica|type=transcript|length=2194bpRun BLAST on NCBI protein sequence of TCONS_00008832-protein >TCONS_00008832-protein ID=TCONS_00008832-protein|Name=TCONS_00008832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=684bp HFFIATFNLVKMFGGGHKKFRVKVTTGKAKGAGTNATINIKLIDHEGNVSRun BLAST on NCBI transcript from alignment at sc0000088:163342..173182+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008832 ID=TCONS_00008832|Name=TCONS_00008832|organism=Clytia hemisphaerica|type=transcript|length=9841bp|location=Sequence derived from alignment at sc0000088:163342..173182+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000088:163342..173182+ >TCONS_00008832 ID=TCONS_00008832|Name=TCONS_00008832|organism=Clytia hemisphaerica|type=CDS|length=30825bp|location=Sequence derived from alignment at sc0000088:163342..173182+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008832 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 245.743 bits (626), Expect = 1.897e-70 Identity = 192/689 (27.87%), Postives = 327/689 (47.46%), Query Frame = 1
Query: 58 FRVKVTTGKAKGAGTNATINIKLIDHEGNVSESHVLDKWLHNDFEYGKIDSYTIYVEKTFGRCEHIILHRDEIGLNDSWYXXXXXXXXXXXADAHFPLSRWLPANTEMQFKKFDSQLPQVVKKEHPEVYQQRQNELDQKKKDFAYA------PIANKERMPRTVTSLPPEETFHRNYIFDLLETKFTGVISQYLKKMR--YEDEFASFDDMYKVYYGPLSPFTVPAGHSGWRTDEKFARLRLTGPNCTVIRGVKKDGGLPTNFPVDKDNLAKHFMEGQSFQQAQDADRLFYIDFKDLDGYIAKSSG----KPMVAPLALFYARMDGTLIPLAIQLFQKNADSNPIFYPPPIDDEKVWCHAKFWFGVADSNYHEPVTHLLQTHLVAGDFITCFHHMISPSHPVYKLMLPHFIYLLNINTDGMPVLTAEDGAFNKILTFGLDNCYDLMYKKYQTFKLSDAYLATDLSNRGV---ENLPNYHYMEDAKPMFKAIEDYITASLKTIYGGKDQVLKDDFEMQNFAKLLCDKTEGMRGVWGDG---TFTKLDDLSKTLSTMVFILSNVHAAANFNQYDEYGYPPNLPFRLDGAPPTDKSPVTEDYLV-KLFDVNVTLATMDLGRTLSMQGTNK--IGNY-ETRYEYKP--DVLKHYLSFIEALKKVGADNDSKNAKRSNPYPWLSPKVVPNSISI 2052
+ V V TG AGT+ I + L+ G SE H+LDK +NDFE G +DSY + V++ G + + + + + LND WY++++T++ FP RW+ + E+ + ++L + + + Q R+ EL+ ++K + + P++ + + LP + F D + + + ++ + ++ + F D K++ +S + W+ D F L G N +IR + LP PV + + S +Q +F +DF+ LDG A + + + AP+ L Y + ++P+AIQL Q D NPIF P D + W AK W +D + H+ +THLL+THLV+ F + + HP++KL++ H + + INT L E G F+K G ++ + + + + RG+ E++P Y Y +D +++AI + TA + IY DQV+++D E+Q+F + GMRG G + + LS+ L+ ++F S HAA NF QYD + PN P + PPT K VT + +V L D + + LS N+ +G Y E + KP + + + +EA+ V A+ +N K+ PY +LSP +PNS++I
Sbjct: 4 YTVTVATGSQWFAGTDDYIYLSLVGSAG-CSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKLAR--DDQIHILKQHRRKELETRQKQYRWMEWNPGFPLSIDAKCHK---DLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVK-ISNTISERVMNHWQEDLMFGYQFLNGCNPVLIRRCTE---LPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPS--DAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTF-TAEVVDIYYEGDQVVEEDPELQDFVNDV--YVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAE---RNKKKQLPYYYLSPDRIPNSVAI 674 The following BLAST results are available for this feature:
BLAST of TCONS_00008832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.