XLOC_003343 (gene) - C. hemisphaerica

Overview
NameXLOC_003343
Unique NameXLOC_003343
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000061:571426..578381+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003343 ID=XLOC_003343|Name=XLOC_003343|organism=Clytia hemisphaerica|type=gene|length=6956bp|location=Sequence derived from alignment at sc0000061:571426..578381+ (Clytia hemisphaerica)
GTTCGAAAATTCTACTAataaatggtttgtttttaaaacattctttttcc atgaagaacttaaattttgattgatgTATAATGGACAATACAATCTGACG GATAATTAGATATTAATGATGGGTTTCTATAGAGgatttttggttttatt tttgatgtgtCTCATTCTCAAAGAGGCTGTATGTAtgaaaaataatcatc agcATGAAAAAGGTAAGAAAATCTACAGGAAAAATGGTACTACCCGGAAA CATTATTTCAAGTAAAGGTCTAGAAATTTGGTAATTTTAGTCCATAATAA ATTCcggaagaaatatttttccttgcaaaatttttgttacttctggatct gtaaaccaaaacaaacacaTATAATTTGCATTGGATTTCGAATTAGCAGA GAGGGATAACTCCTGACTGACAGATttaatggttttgtttttaaataaca gtgatatcgtttgctaaCTCAATTTTAACATGAAggattttaatttacaa gctttttcacattgaattgacacggatgtggcgcaagattggtcagaatg AGGAAAGGAAAAgttatattttgtttattcagaataatataataatagga TGACACTGTTCTgttatgaaatatgtgtctgatatgaaacgggaacactt ctgtaaaaataaaacctttaaggttTAGATTTATAAAATTCGGTGATTTT GGTCCATTAATTCcggaagaaatattttttcttgcaCAATTTTTGTTAAT GTTTgcatttgaaaatcaaaacgctctaaacatttttggaatcttAATTT TCCGATCTATAGGAAACACCAAACAAGACCCCACAAAAGAGCAGGACTTG AGTGAACTCAAAGAACTTCATCAACTGGTCGAGAAGTTTGCTCAAAACCA AGCCATAAGAGGAAACAAGCGTACTTCAACACCAAGAACAGCTTTGGTAA CTTCCCCTGTAGTCCATAATGGCAAGACACCATTATCAAGCAGCAAGACT GTAATGGCAACTGTTCCAAAGAAGAGAACCACAAGTGGGGTAGTAAACAC TATCGAGAGGCTACAGAATGCTATTGGTGTGGATGCAGTAGGTGGTGAAG AGGACCAACCTACCATAATGTTAGAGGCTGCCTCCTCTGGATCAGGGGAT GAAGACGGTGGAATGGAGGAGATATCAGGATCAGGGAGTGGTAGTGGTGC CTCTAAGGAGGACGCCGAATGGGTACCAGTCATCTTGGACGAGGGAAGCA ACCCCAGGGGAGCAGTGACCAAAAATAAGGCAGTTCAAAGAAACGTAAAG CAAGTGCAGAAAGCAACCCAAAAGAAAACACCGGCAACGCAAAAATCAAA TCAGAAAGTACGGTACGAACAAAAAATTGCATTAACGAATACCAAAATGT CATCACCACAAATCAAAACGCAAACTATGAACTACGCTAATATCCACTAC CAACAACAGAGACTTCAGACCAATCCTTTAAACGCATATCAGAACTACTG GCCCCAATACAACCAAAATAAAGGGAGTGTAAAAACTGCAACACCAAAAG GGAGTGGAATAACTGCTATACGAAACCAAATGAGGCTCAATGTAAATTAC GTAGCACCCAAAGCTCAGAGTGCAAGTCAAGTTCAACCACAAAATTCAGT TGGTGCTATTCAATCAGCAATGATTCAACCAGCTCAACCAAAAGTACGTA TATGATACCAGGTTTACCACAGataattttctcttttctaagtgtatttt ctcgagttctttgagattcaaaattgaaaggaattgtATTTTGCAAACAG ACAAGCCAACCTAGCCTGGCTATGATTTCTTTTAtttactgatggcgaaa tgaataGCATGATTTGGGCTACGAGTTTGAATCTTCCAGCTCCAAATCAC AGTTGAAAAcgcagccaatcaaattttgttaccATTTTGTTACCATTTGG TCAAAAAACACAAGTTTCAAAATTGTGTTGATTTTaataagtgaggacag cgctaaatccGGATTTTCTACTGTGGGCCTACTGTTAATTATTTGAGGCA AAAATCTGCCTCACTGGTCAAACCCGTCCgctatacatcagattataaaa atacaggacgggtctcctAGCCGACCAAGCCTAGAAAGATAATAAATCTA TAACATCACAGCATTGTGAGTATTTTAAACGTTAATCTTTTGAATTGATA GATTTCAGCCCCGACCAAAGTTTTAACCGTCCGCAAGGAGACCTCCaaga ataaaatcaaagaaaccAAATtgtcaaaaactgctgacggtGCAGAAGAT ACTGATGAGGATGATGATGAACAGAAAACGATTGATCTTCTCTTCGATAT ACAGGAAGAAAATCATGCtggtcaaaagaagaaaaagaatcaCAACAAAA AGAAGGTAAGGTATCTTCCGATTATCCTGTAGATGCGGTACGCTGTTAGA ATTAACGCATCTActttaaaaggaagaaaatttggtggatttggcgaatt taccCAAAATTCACCAGATTATAAAGTTCCCGtcaaaatgtttattttaa aacacaaaatgtgtattcatttctaattttttactttaaaaaaattaatg gaTGATCTGGATAATGAATCAACCCCAAGGGTGgatgtctttttgatttc ttaacATATTTTACTGAACTTTTCTAGAGTCACAAGAAGAACAAGAACGC AAAAGGGAAGAAGAataaaacacaacaaaaatcgtctgtcaaagaaaata aaaatgtcccTGAGCAACCCGTATCCGAAGTATTGATGTTTTCAGGTAGC AAATTATTAAcgttattttttatatattttcttgaATAGCTCCTTATTGG GTTAGGTGCCAAATCAAGAAGTTCCTCCCATTGTATATACTTTTAAAATC CTAGAATAGTGAACAGTGTACTGGACACCAGAGGGGAAGGTCTTGAACTG TTCAAATTATGAAGAAATTTCAGAGACCCGAGTTTTGGAGTCGATTAATA CAGAGCTTCTCTTGAAAGCTAACTTTAAGAaactttcactttttttataa atctaGATAACAAATCTACTTTGAATATCTAAATGTAGCCTGCAATCGTG TCTCTTAGGAAGCAAATAGGAGTTTTCCATACCGTCTGAAGAGTATGTGC CATATCGTAGGTATAACTGTATTAAAAAATTCCCGTAATAACTTCGTTGT TTCAGGGAAAAATGATTTATCTACCAAGAATGTGGACCCTTTGGTCATCA AAGAAGCGTTGAATATATTCACCAAGAATTCTGCCAAGAAACACGAGGAA GGTGCTAAAACTAACAACACATCCAACGTTGTTTTATCCATACCagaaaa acacgtcaaaaatctAACAGAACAGAATACAGACTCAGGGAAAACAATCA TTTTAGCTGTTCCAGTGAAACTAACAGATAAAGATATGTTGGAGCAACAA GTTAATGCTATTAAGGAGAAACTATTAGCTCTTGGTGAAGAATCAGGTAA AACAAACACCACATCCCTGACACTCAAAAATGATAGGGAAAGTGGGCCAA GACTGAACGAAAAAGAACCGTCTATACCTCACTTGAATGAAAAAGAGATG GCCGGGCCACACCTAAACGAGAAGGATGCATCACTGCAGCATAGCAAGGA AGGAGGATCTGTAGGTCCACGCCTTAATGAGAAAGAGCCATCAGGAGCAG TAAAAGAAACAACAAAAGATAGCAATGAAGTCAAACATCTTTCAACAACA AATGTAGATAGTGGAAAAGATGAAAATACGAAAGGTTCAGGATCACATAT AGATGGATCTAAAGAATCAAACGATGCGAAACAATCACCTCAATTCACGT TCCCGGTACCTTCACCAGTCGAGAAACATCTGAATGAAATCACTGAGAAT CCAATATCTTCGGTGAATACAGCTCAACCGGTTCTTGATGAACTTAAAGA GACTGGTGCTGAAATTGCTGGTGAAGACGGCCGCGAAAAACAAAGTAAAG GATTTTTGGAAGCCATTGCTAAATTGAAGAATAAAGAGCAACAAAAGGTA TGATATCaacttttggtgttttttggCTGGGTGGGGCTTCTTCTTATTGG GTGAGTATGAATTTTAGTATGCAAAACTTTCATCAAAGTGAAtaatttta aacaaattctTATTGGGAAACAAGATTTTGTATGGGTATAAATTATATGC AAAACTTTCATTTAATTGGATGTTTTTTGGGGAGTTTTGAACGAGAAAAG CAAATTAGTCATTCAATTGAGGAATAATCGAATGATTTCCAACCTGACAA GCCTTTCTTGTCGACTTAACATCACAGGAGGATTGGGTTTGAGTTTACTG GGGTCGAATGTACTGATTTCTAACTACTTAATTGGGTTGGCTTCTCATAA ATAGGAAAACGTGCCCAGTTTTATAGCTGTCTACTGtgtcattttgtttt gtgttcTGGTCGCCAACAACATGAAAATTTAGACGTTCGAAAATATGACT GAAAACAGAAAACATCATGGCGGGATAATGAACTAATCGAatcaaaaaac tggttttaagGCCTGAGATGGCAAAAATTTGGAGGATGAACAAAATAACT CAAGTTTGGCGAATGGTGGAATATAGTCATTTTAGCGGGaaacttaattt ggcgattttgaAATACGCCgaattttctttcctttattaTAATCAGTCAG CGAGATTAACTTTTGTTTCAATACCGTACTTTTCAATAATATCATATTAA CTTTTCATCAGGTTGCATCGACCAATCAGGAACAAGATGGTGATGATGAC GTCGCAAACAACCAACCACAAACTGTTCCATCCAATACAGCTCTTTCTAC TGAAGTTGAAGATAACTCAGATGAAAGTAAAATCATACCAACTGAAAGCC AAACAAGTGAAGCTTCCAAAAACAATGATGAAGAAGATGATGAGTCACTT AGTAGTGCTTCCTCTAGTCAAGGATTATCGAATAAGAACGTGGCAACAAC TGGTTACCAGAAACCAGCTAACATCAAACCTCCTCTCCAGACCAATACTA ATGCGAGACAAGGAGCTAAAGCAGCAGTTGGGACTTTGTCTCAGGAGGAT GCTGACGAGGATACAGAAGAGGAGGAAGGGGATGAAGATGCACAACTGAA GGGTAACAGATACCTTCTTCCAGGGAAGCAGGCTAGTGGGCACCGAGCTT CCTCCTCACTGTTCAAGGGTAAAGAATACAAGCCTTCTCATATACCAGTG ACCTTTCATAAGCATCTCAGTGGATCCTCGCATTTTAAGAGTGGAGATTT CAAGCCGTCTTACATACCAATGACTTACCACAAACATGGTGGTTCAACTT CAAAATTTAAGGGAGGTGATTATAAGCCTTCGAGGATACCGAtgactttt aaaaacattagaCATGACTCAAAACCGAAAGACAATCATTTGATTGATGA CGATGGATGTCGCGTGAGCTGCAAACGTGTTTGTACACCAAGCTGTCGTT TCGAATGCTGTAAAGGTGGGGATAAGAAAACGAATGCAAAGAATGTTGGC AAAGGTTTACACAGCCAGAAATTCAATACAAGGAATGTGGGTAAACATTT ACacaagaagaaaatgaaagattCAAAAATTGAAGATAAAGTGAAATCGA TTAACCAAAAAATCAGTAAATTGTTGAAAAAACCAGCATCAAAAGCTCTG GCGTTTAAAGATTTGCCAAGCTTACCAAAGCTGAGAAAGAAGATcaatta tgattctaaaaaaggacaaaagtttttaaaagaaacacAAAAGAAATTAG AATCATTGATTTCTTTGTTATCAAAATCTTCAGATGAATTGAATTATGGA CCGAGAACTTCGGCAAGTAAAAAGACATTAAGTTGTGATGCAGAATGTAA AGTAATGTGTTTACCAAGCTGTAAGTTTGAATGCTGTAAACAATAGCTGG AACCTTGTAACTTATAGTATGAATGAAGATAGGTTTGTGACATAAATACA TGAAACTTAAACATAAACTTAAGTTTAAGGCAAGATGTATACATGCAAAG TGTAAAGTAATGTCTTTGCCAGTTCggatacaaattttacaaacaTTAAC TGGAATGTGTTAAGCAAAGTGAATATTCGAATATTGCAAAACATAGCTGG AACCTTGTGAGGACAATGTGTTAAGCAAGTTACACATTCGAAAATTACAG ACAATAATTCAAACCCTGCTGTTTGAATTATAGAGACCAAAATGTAACTG CTTTTTGATGAGGGCATGATACGAAATTATAATACAATGATAAAGCTATT ATATTGGTAAATTGGAATAGTCTATTAACTGATAATTGGTACCTAGTTTC AAATTAGAATATCCATCTGTGGCTAAACACACAGTTATGAGAAATCTCAT ATTTCATAGAGATACAGGACGTGCACAATGAGCTATAATCGCCAATATGT GACTGTAATTGAGTGAGCTCAGAGCAAGTTGGGCATTAGGGCAAAGACAA TAATCTTCAATGAAGAGATTTGAGAAACATTTTACATTAAAGCTGGCATA TAACAAGAACTTGAGAGATTGGATTTTAATGAGACAGcaataaaatttga ttaaatgTAAAGATATATTTTCCAGGTTATCATGATAAAAgacaaaaatt gtaaatatttttatgtgACAGAATATAATATAATACAGCAATGATAAAGC AATAATTATTTTTATGTACAAAAGATaagattgatttgaaaatatagtaa aacgAAGTTACGGTAACCGAAATGGGGATATCAAAAACAGTAAAAGTCTT TTAAGACAGCCTCTGAAAGGTCTCagagattttcttttttgttagaAACT CTTGTcattaaaactttgaaaattttttgaaccgaaagtttttaaataat atgtgAGATATATTGATATAACCGCTCGAGTTTCGTGATgcgattctatt tatttc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005853TCONS_00005853Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005853-proteinTCONS_00005853-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:571426..578381 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1 0.07 0.06 0.01 0.06 0.07 3.32 4.24 1.1 1.01 1.91 1.88 4.34 3.63 2.72 6.86 3.69 3.56 0 0.01 1.97 1.9 1.08 1.39 2.88 3.8 0.41 0.05 0.03 0.01