XLOC_003657 (gene) - C. hemisphaerica

Overview
NameXLOC_003657
Unique NameXLOC_003657
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000067:237454..244367+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003657 ID=XLOC_003657|Name=XLOC_003657|organism=Clytia hemisphaerica|type=gene|length=6914bp|location=Sequence derived from alignment at sc0000067:237454..244367+ (Clytia hemisphaerica)
CCCATTCCCACTGCGTGTGGTTCTTTGGTAGTTGGCCTGGTGTATTGTTA GTGTATTGTCTCTTTTTAGAAGGAAAAAAATGCTCATCTTACCATTTCCA ATGACAGCTAAATAAACATAGACAACCCAATACCAACCATGAAAACTTTG CAATTCATAAAAATAATTCCATAACAACTGACCAGCGCACACTACCCAAA GCAGAAGAGCGAAAAGATTATATCGTTTGACAAGCTTCGCGCAATGTACC CTTTCAGGACCCAGTTCAATCTCCAGCATTTTACTGTAATTGCCTTTTCG GTAATACCACTTAGTGCAGAAGAAAGCTACAGCAAACGTTGCACTAAAAA TCACACCATTGACAGActttttccaataaaatttaTTGTCGTTTTCAATG TTATAGAAGTAAATGATAGCGGTAACGAGGAGAATCAACATAACGTATCC AAACCTATTGTACATCCTCATCAGAAGACTTGCGTTGATCGGTTGCCATA GTGCTAAGCCACGAAGCATCAATCGACAAGGACGTATTGTGTGAGTTGAT TTTTCCATTATAAATAATTTGTGGGTGCTGTCCCGTTAatattttgagta tttctacTTTACCAGAAATTAATAAAGATACAACTCGCCACGACCAGTTG TTGTTGATTAATTCTTAACTTACATTTCTGAATGTAACATATTTTTCTCC TCTCGAAATGATAtttgattcatttttttcagGTTTATTTACGCGTCAGT TTGTTATTGTCGTATCTTACTGATACCCAAACAAAAACATCTCAAATTCC ATGCTTGCTTTTCAAGGCTCTTTTGTTTGCGATGTGAGTGAGATGTGATT TACTCTTTCAAAGAATTGCGTTCAGAATTTTGAACTGTGTAATGGATGTT GCATCTCCAACTCATGCGCTACGACCCTGTCAATTGATGTTACGTTGTCT AGCACTTTGGCAACCCAGCAATGCGAAACCACTCGTGAAGCATTTAAACA AGTTTGGTTTTGTTATGTTGCTTGCTCTTGTTGGAGGCATCATTTACATC TTCTATGGCGGTTCTTCAAAGTGGGAAGGATCTGTCAATGGGATTTTGTT CAGCGCTATTTTCACCGTTGCTTTCTTGTGCACCAAATGGCATTACAGAA AGGGGAACTACAGTTGGTTAGTTGAAAATGAGCTTCAAAGCGAACGCAAC TATTCCGAACTCGTCCGAAGATACAATATTCTTGCGTTCGTACTATGGGC TGTGTGTTCAGGCCAGTTGGTATCCTTCTTCTACTCGACATTCAAAATCG AATATCATTGGAAATGGATTATTTATGTGTATATAGCAGTCATTGGAAAT GGTGAGAAAACTAAACTTTCCAAGCCCATGATACGTTAGACAGCCCTACT AGACTGTTTCCTTGAAAGATTAGCCCAATAGTAATAAGGCTGGTTAAAta ttaagggaagaaattttcgcgagaagaaattttcgcggaatttaatttcg cgaattaggGCGTaattcgtgaaattaaattccgcaaaacacaccaaaat ggctaaatcgcgaaattaaattccgcgataTTCGATTTTTTGGAGGAAGA AGACGGCGATGAACTTTAATCATGACTTTTGTTAAAGTTTGTTAATATGA CTGAAATATGTcttgaaatcgatgaaaaatatgaaaaacattttctctct aaaaaaaattcttttgaaatttctcattcgcgaaattaaattccgtgaaa cttttgaaatcggctcattcgcgaaattaaattccgcgaaatttgccatt ttgaaattctgattcgcgaaattaaattccgcgaaaatttcttctcgcga aaatttcttcccttaaggtagtcgATTGTTTTAAAGTCACTCTCTTAGCA GTTTCTTCCTAGATTATGTAGTCAAAGTGATACAGCAAACCGGCTTCGTT AACTTATTGGTTAATCAACTAAACcataaaattatttattttaaggTTGG CGTATATGCTGGTTAATTCTTTACGCGTACATTTGCCACGTTCACTGGAG ATTGATTCAATCCATTCGCGAAAAATTTCGAAGATATCGAAATGAACCGA TTGAAGCAGAACAAATCGAGGTTTAAATTTGTTTCTGTTTAAATATTTGC TTGATAGAGGTCTAGAGGGTCACAAAGGCAAAGCTATATAGATTAGGACG TAGGGCTGGTTAGTGTACACACATTGATTTTAGATCCCAACGGTTATATT TATAGCATGCTTTTAAAACTTTACTTTTCTAATTCTATTTCAGGATTTGA TGCAACGTTTCAATGTCCTCAAAAAGAAGTTGAACAAATCGGAGAGAGCT TTACATGGAATCATTTCTTTATCCGTTGCGATTCATGTTGTTGATATGAC GGCATATagttttgctttcttttttgaAGCCTATAAAAATGCGTTGTTAG TAGTGTATCTGCTGGAGATGGTATTCATTAGCTTGTTTATCAAGGTTTGT TTATAACAAAATGCTAGGCTTGATTAAAGTTCCTTTGAAAATAAGTTCCT TGCTCTAACGAAAATGCTACCTGGTTTATCTGGGTGTTATTTGATGAGTT TTAGCCAGCATTGATTTCAAATCCTCGAAGATGCTAGATTCGAaactttt ggatgggaaatgaagccattttCGTAAAATTGATCGCTAGATTTTGAAAT GTCACGTGAAATCAAAAAGAGGGCTGGATTCAATCCGCCATTCTAAATGC TGCGCAAATCTTaagattcactttttcttgcttgagaaatgTTAGAGATT CCTTCATAGCCCctggggctttaaactcaatagtTTTAAGAGGCCTGCGG GAATGAGAGCTATTTTGagttctttttcatttcagctgATACCAGCAGCC ATCGTGAATTCCTCACTGAGAAAACTGATGATTTTAGTTGGAGATATGTG TTCTCCTTTGAGAGGAGAGATACAAGATCAAATGATGTTATATCATCAAC ATATTCACATCACTGAACAAGATATATGGGTTATCGAATATTGGGTGTCA AAATCACCGCTCGGTTGACCGGCTATTTACTCACAACGCTCGTTTCTGTG CTCCTGGCTGTAATTCATTTCACTCGTAAGGCAAACCTCTGATAACCTCT TAACTCGTTGCtttgggtcaagctggagtttttacaagaaaaataaaaga tgtAAATTACAGAACAGTGGATAACTGTAACGTGCTAAAGCACTGGGCTT CAATGTTTTAACATATCTCATACGCGGATAAAAAGCAAGGATAATCGTGT TTTAGTTGAATTATCCCAAGAAGCGTTATCGACCGACAAATGACGATTAT TGATTTCATATACTTATAGTGGTAAAGATGGATTTGATAGTTCTGGTAAA TGCAATGCTGTTGAAGAAGATTCTTGTGAATAAGATGCTGGCAGTGATGA ACGAGAATAAGGATGTGATGGTGGAGATTGTTGGAATCACCGGTATCAAT GGAATCATTGGAATTGATCAATAgtgcaaatgatggaatcagaATCAGAA TCCACAAGAATCAATGATATTTCTATTTTGCAACCATCAGGGCcaccatt tttaatttttttttagttttgttgtCGATTAACtagcaattttctttaaa acacttagaaaaaaatgaccgtggcatttaaagagttaaaaaattttggt gaatcagctttgtcaatttttaatactcaaatacaATATATCCGTGGCAT CTCCACCAACACCTCCATTTCTACAGCAAAAGGAAACTATGGTTAATTCC CTGTGGTATGCAAAGGTTCTTTCCCTTTGTTTACATCGGCTTCAATGATT TCTCACTCAAGCGGTTGGGGGTTTCCTTCTATTTCTCAACCTGCCCCTAC CCTATAAACCTGTTTTCACAGGGGTTTtccctttatattttttttcactt ttctagCATGTATTTAATATTTAGCCGAAATTAACCGGTTTTTCATGAAT TATACTCTTTTATCTAATTGAGAGTTTCTTGGttcaaaaaaacacaaaaa cttCCTTTCCCACTCTcagttttagggaaaaaatgAGACGAACATGTGTT TTCCCTGGGGTTGCTCGAACGAGTTACCCAGTTAGCAAGGTTTCTTTCTT CCCTTTTTCCTGTTCTTAAAACTTTCCCTTTGTCTCAGCAGATACAAAAG TGGCGATAGTTCAACACAATTTTATCTTGAAATCACTCTATTTCTAGCCA CCATAGAGTTCAGACATCTCTCGAAGCATGTTGCtgattattttatttct ttttgcttCAATTGCGCCTGACTTAGTTCATCTTTTTGGAGATGATTCTT CTTCGAAACCTCTCACGGGTACCATAACATGGTATAATGGCTTGTGTCAG GAAGTGGACGGCCGGAAAAGGTTTTATGTGGAGAAAAAGGGTTATGAATA CTGCGATGGACTCTGCCCCTTGGATCGATTGCCACCGTATGGTATAGAGT TTTCATTTTGCTATTTCTGCTGCTGGGCAAACAAAACAGGTATGGTAGTT CTTTTCGTTGCTCAAAAGCCAAATATGTGTACATATCTAATACCTGTGCA AATTATAACCTAGATTATAACCATAATAAGTTGAGTGATTGCTTACAAGG GGTATTCACCTTAGTGAATCACGACAGCTATTGTTTTACCGCTTCTCTTT TTATATCTCGTGTAATTTTTCCATCGAAGAGAGATTTTTACTGAATTTTC CAACAGGGAGGAGTTAGCTACCATTTATATTTTCTCGCTAGTTCCAGATT TTTTTTGTAGATATCGTGTGAGCACGTTTTTAGCTCGCCCTCTTCTTTCT tggactacacgctttttttataagaatggtgttttttcatttcatgatgg atattcttaactttttggcgaaaatcatccaaaaatattcttacagtatt cttaggttaagatcgaaattggcaatctacaagttaaaatgcattaaaaa tggcattcttaggttcagttgctaaattccatgatggtgatattcttNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNgagcctggatgtgcttatttttttagcaatt ttcagcctaaaatgttcttaaatgcgttcttaatttttcagactactcta aatcgacaatatgatacaaaatagagagcacttaaatttggcaaaatttg gacaaaatttttgactttcgaCTCTTGAAGATCCATCCCTAAAttcagtt aaaactgcttaaaaagaggaaaaaattgtagtttcttgtcatttttttcc aaactgaggctgggcatgttcttaagatgttcttaatttttcgacgaatt tcagcctatatgttcttataaactaggttctaataaaaaaaaaacgtgta ttcttaattttttggccattttcatcatggacattcttataaagtgcata cttataaaaaaaagcgtgtagggaGATGTTCAGACGTGTTTAAAACTTAA ATAAATTATTGTGTCTTATTTCTTCGTCCAAATTCCATCTATATCTGAGA AAGATTATACTAGTCTGTCGCACGGGCATGTTCTACAAAATTATCctttt tattttcagtggaATTGTTAcatgaagaaaaacattttcccgATCAACTG GCAGCAAGTGAAGAGAGAGGCGACAAATATCAATCATGGTTCCACATTGC ATTTGCGTTGCTATGCACCTTTATCCTTATCAACATCGTTTTCATTGTGG CAATTAATGTCAATAAATACCTGAATAGGAAGAACAGAGGTGAGCTTGTA TAAGATCTCTCTATATAAAACCGTGGGTGGGAGTTTCTATAGAAGCGCGA GTCCGTTAGGGAATACCTGTAGCATAGGGGTGAGTTTCATCTCAATAAAC ATGAGGTAAGGATTGACTTTCTAAATTGAAAATCTTCCTCTGTTTTTAGA ATCTAAAGTTGATTGgatattttatttaattctACGATTTTCTATAAAAG CGAACATACAACCTGATGAGTTGGGAGAGCAAACACGCCCGAAGAACCGC CCAAATGGAATCAGCAATGCCGCGAATTTTGACGTAGTAATCTCTCAAAG AGAAGATCAGCATGAAGTTGCATCAAACACACCTTTGACTGACCGTGCCA GCGGAAGCATTCCGTTCGAAGGTCATGGTGGAATCAACATTAACAAGACT TTCAGTTCTTCTCTGGCTTCATCACTGGATAGTGAGCAAGATGACGATTC GTTTCCAACAACTGGCCAACGACACCAACCTCCGTCCCCAGTAACCTATG ATGTTTCTGAAAGAGGTCAGTAATAAAGATATTTTAATTGTGATCCAAAA TGTAACAAAAGATAGACGAGGAGAGATTTCAGCCATAAAACGGCTAACTA ACGGGTTTGTTTTTCTATCATAGGTCAACCAGCTTTTACACCTTCACTCA CTACGGGCGCCGCCACAAACCTACATAATGGCAATTCCGCATGCTTGAGC CCACCCATGATGTCTGCTATTCTTGAAGATATCCCATTGGGCCAAAGAAG TGAGCAATCTGAGGAACGCCGGATGCGAGAAGCACCCGAGAGTAACGTAG CTTCTGATAcatgttaaaatatttttatttaactatattttacaacttta tcTATATGgatttaaacacccctgtctcgcagccccggtgaaacCATGGT GGAACTCTTTTCcacaatagcgctccgcaatgcatacgtcataattatta cttttcactttttttgacatttgtacgagttgcaatcccacaattcaacg cggctcaattaaag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006404TCONS_00006404Clytia hemisphaericatranscript
TCONS_00006405TCONS_00006405Clytia hemisphaericatranscript
TCONS_00006406TCONS_00006406Clytia hemisphaericatranscript
TCONS_00006407TCONS_00006407Clytia hemisphaericatranscript
TCONS_00006408TCONS_00006408Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006408-proteinTCONS_00006408-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:237454..244367 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04 0.86 0.33 0.3 0.35 0.23 3.13 5.3 6.08 34.84 5.18 4.69 16.94 17.5 18.29 17.93 3.94 5.17 8.18 12.83 4.08 3.91 4.66 3.69 12.91 22.24 24.05 22.81 7.39 6.37