XLOC_003963 (gene) - C. hemisphaerica

Overview
NameXLOC_003963
Unique NameXLOC_003963
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000073:646087..655423-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003963 ID=XLOC_003963|Name=XLOC_003963|organism=Clytia hemisphaerica|type=gene|length=9337bp|location=Sequence derived from alignment at sc0000073:646087..655423- (Clytia hemisphaerica)
GCGAATACATAAAGATATAGAAGAGGACATTACTAAAAAAATTCAGTGAG
TCAATTTTCAAACACGATTTGAATGTTGGACCTTTTTTTTTTATTATAGG
AGTATATTTCGCAGGTCTATTGACCTCTATGAAACAATCTAATTCAAATT
TACAGTTCATCAATAACGGTCTTTTTACATATTTTCTTAAAGTAGAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCATTCGTGAAGCATTTATTGGCG
GTACAGGATCCATATTTTTCAGCATTTTCAGTGGATTTTTCATCGATTGT
TGCCATTCTTTTTCATTCATTTGCAAGAGCGTGGCCGTCTTAGAAGCGGT
TTTAGAATGGTAATCATAAGTGTTTTAAAAATGGCGTTTACATGTGTATG
ATAGAAATTTGGTCAAAATTTTGCCTGAACGTTTGGTGCAAGGGTTATAG
ATACCAGTGTGTTGTTACTACAGTTTGACGCTTTCTAATTCGACCATTAT
TTGAGGGTAGTCAGGGTTAACAAGAAACTTTCATAAACGACACTCTATCA
TTCGATACGCTCCCTTATTCGATGAAAATTCAATTCACCTTGAAAATCGA
ATTAGAGAGGGTCAACTGTAGTTCTCAAAGCATACCTTATCGGGGAAAAC
TTCGTCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGGCCAAA
ATTTCGTCTCTTTTCCCCGACGAAGTTTCCCCCGATAAGGTACCATGGTG
TAACCAAATGTCCATAGAGAACTTCAATAAAAGGCGATGAGATGTCTGGT
AATAATTGTCGACAAAAGAAAAACTGCTGCTGCAATGAGATTTTTTCTCT
ATAATGTGTTCTCGCTTTATATTCTGTGGTTATTTAATACGCTGATTTAA
GATAAGAATTTGATCGGTTCACTTTATAATGAAATTTTTTTTTTTCCAGT
GTAATCTGTCAAGAGAGTTTGTAAGTAGAGAGAGTTGACAAGTAATTAGG
AGTGGCTTTTTTTAGAAACGATTTTTTCTGTAGTAGGTTCTACTAATAAG
AGCAAAGTTATGTGGCAAAAGTTATGGATGGTATTAGGTATAAAAAAATA
AAAGGGGTGTGCTTGGTGACTGCTTCATTGCAAGTCTGACGGTAGAAATC
TTATGTATCTTTATAGTTTTAACTCGCACCCATATTGATTTATTTTGCAC
ATTGTCGACATCTGAGGCTCATTTTCAAGTGGCTTCAGCAAAATAAGATA
TGAAATTAAATTTACATTGTAAGGGTCAGAAACGCTCGGTAAAATGCACT
GTGAGGCTACCTTTTCACTGCACAAAAGCTGCACTGTAATGGTCCGATTT
ATAAAGCCATTTTTTTCGGCGGCACATGTCGTCGTGCCCCCCCCCCCCCG
GCCCCAAACCCCCCCCCCCCNTGCACTGTAATGGTCCGATTTATAAAGCC
ATTTTTTTCGGCGGCACATGTCGTCGTGCCCCCCCCCCGGGCTACAACTG
CATCAGCACTGTTAACAAAATACAGGATAATGATATTTTGTAGCTTTTCA
TAAGAAAGAAACCTAAAAGTTTTCATTTTCTTTGTAGCTTTAATTTATTA
CCCAACACCATTTTAACCAAATTTCGTTCGACCCACCAAACTACGGTACA
GTATGCACGTAAGACTTTTTTCTAGTTTCTGCAGGTCATATTTTCCATTT
TTGTATCTTTTGTGTTCCAGTTAATTCTATTTGCGGTTGGTTCACAATGT
CACTTTCCATGATGTCTGTTTTCAGATTTAAATAACAACTTTGAGAGATT
GGTGATGGTCAAGACTAACAGCGAAAAATGTCTGAAAAATGTCACTCTCT
TTTCTCTTTGAGAATTCCAACTCTTTCTACCGGTTGTACTTATTAGGGGA
TATAACTTTTGCAATAAATAAGCTGGTATATAATACGAAATTTTTTTATT
GCGAGCAGAAATTCCTTCCATAGCAAATTATAAAAAATTATATCGGGCAA
GTAATAATCTTTTCAACCGATTTTTTGACGTCAAGTATGAGAAAGATGTT
ACAAGAGGTAGAAGTGACATTAAAATGTATTGAGCATCGATCTTCATTCT
TCATTTAAAAGATTCAAAGGCTTCAAATTTTAATTTTCTAACTATTTAGA
TAAAATAATAACAAACCAATAGGACAATGGCAGACCCACCACCTCCTGCA
TACGATGAAGCAACCACTCAACCAAATGCTCCTCCCCCACAAGGGGTTGT
CCCTTATCCCCAGCCTGGCGCTCAGTACCCTCCACCTGCAAGCTACCCAC
CACCAGGTGGTCAATACCCACCACCAGGAGCTCAATACCCTCCACAGGGT
GCTCAATACCCACCACCAGGAGCTCAATACCCACCACCAGGAGCTCAATA
CCCTCCTCCAGGAGGCCAGTACCCACCACCAGCTGCACAATACCCACCTG
CAGGAGCCCAGTATCCTCCTCCCGGACAATACCCACCACCAGGACAGTAT
CCACCTCCTGGAGCTTATCCACCACCAACTCAAGTTGAGATGGTTGCCTT
AAATACAGGCGGTAACCCTGCACTAACAACGGAAGGGCCTCCTACTTACA
ATGCGATTGAAGGAGGAACGACAGGAGAGGCGAAAGTAACAGAAACAACA
GCTGCAGCAGAGGACTCGTCAGATAGCGAGACATGTAAGTCATTTTTTCT
TCTGTTTTTCAAGAGTAACTTAAAGGAAGAAATTTTGGCGGGAATTTAAT
TTGGCGGATGGCCGAAAAAGTTTTTTCAGAGGGAATTTAATTTGGCGGAT
AGCTGGATAAAGTAATTTTGACGGGAATTTAATTTGGCGGTTGCAGGATA
TTTTTTACCAAAAGCGTTATCAAATAAGCAAAAAAACCTGTTTTAAGGTT
TGAAATAGCACAAATTTGGGGAATGCGTGAAATAAATTAAATTTGGCGGG
AATTTAATTTGGCGGATGGAGGAAAAAATAAATTTTGGCGGGAATTTAAT
TTGGCGGATGGAGGAAAAAATAAATTTTGGCGGGAACTTAATTTGGCGGA
TTTTGGCGAAATCCGCCAAATCCGCCAAATTTTCTTTCCGCCAAAATTTC
TTCCTTTAAGGTAGAAATTTTTGGTTGCTGTAAAATATTGTGAACACTCA
AAGATGATATAATTGTAACAGCTGCTGAGAAAAGATTAACGGTATAAAAC
TTTCTACAAATTATTTGTACATTAATATCGAGTGAGAATCATTTTAGTAG
TACGATAAACATTCTAAAGCTTCATTAAGAAATTGACTCTCGAATTTTCA
ATATAAGTTAATTTTCATCAGTAAGGAATATCTGTCAAGACTTACATTTA
ATTAAGTCGCGTTTTCGATTCTAATATTCGACATCTACAGCACTATATCC
TAAGAAAAAGAAAAATGCCATTTAGTTACCAAGAAAATCGATTTTTTTTA
TAAAATGTTGTTTTTATTTTTTCAGCTGTGTTTGGTGCCTTCATTGGGAT
GTTGGTTTTCGCAGCAATCCCGTGTGCTATGATTTACTTAGGTAACAAAT
ATTTTGTTTATTATAGACAGCTCTTTCAGGAACAAAGCTCATCTTCCACA
AAATGTAATACTAGATATAGTATCATCTCAAAAATATCTCCCTAACATGA
GCATAAGATGCATCTCTAACATTTCTCTTACTTTTGAAAAAAAAGAAATA
AAGTATTTTTGACTTAGGCAGACCCAAACTCTCTTTTGGATTAAAATGCT
AACAACCAACTCTTCGTAAGAACAGGTCGGATAAAGTCAAATGCTCATGG
TAACTGCAAACTCGGCTCACAGATTGCTTTTGCCATCATTTGGCCTCATT
CCATCCGACAAAACTAGAATCCAATCCTATTGTGGTGTTAGGGTTGAATT
GAAAGCTGTACACGTTTTTTTATAAGAACATCCAAAATAGTAGAATCCTT
CTGATGTTTTTAACTTTTTGAGATTTAAGCCTTAAAAATGCTGTTATTTC
CACCATTTTGTGGGTATTTTTGTCCGTTTTCCCAAAAGAAATTGGGTGTT
TTAGAGTCCTCAAAGCCTTAAAATGTTCTTAACTTGTTCTTAACATTTTG
GCCATTGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAACGTGAA
TATAAATGCTCAGTACAAACCCTATCTACCCTTGAAATGCGCAAGGACTG
GGTTAGAGTTTGGGTATGATTGATGTCAAATGTCTGAAATCGTTGACGTC
AAAATGTTCTGGTAAATAAACGCTTTAAGGGTTGTTATTGGACCATCTTC
GCATGTAACAGAATGAAGCCATTCTATTGGTTAGAAGTGACTAGTCACTA
GTAGAATGGCTTACGGAACCGAAGTGTGTGAACGTGGTCTTAGTCTTAAC
CGCAGACATCTTATAAAACACTAGATAGAGCTACACAGTCCCCATTTGAT
TCAAAATTATCCGCCATCTCTGATAAGTAGACCATAGCTCGGTGCCGGTA
ATTTGATCGATCAAGCTTATCTTTCGCCTCGTCGCTTCGCGCCATTCAGG
ATTTTTGCTTGGTTGAACAAATTGCTGGTACCGAACTGTGGCCTACTGTG
ACCTACTTTCAGCAAAGATGGTGCATTAGTTTGCTTCACTTGGGAAATAC
AGAGTAGCTCTATCTAGTGTTTTATATGAGATATTTGTGGTCTTAACCAG
TGACATAAATGGTGACTTTATTGTTTTAGGATACACGCACCTTGGAGGAT
GTCCTGTACGAGAAAACGTTCCCTTGTTTTGTTTGCTCAGTGGTGTTTTA
GCATTGGTGGCGTTCGTTAGTTTCTTCTTTGTGATGTTATGTGATGACGA
CTCAAGTTGCTCCAACTTCTGGCTCGGCTGTTTCGGCCTCTTCATTGTGG
CCCATTTTGGGGTCCAGTGTTGGGGCAGTTATTTGGTGTTCCGCTATTGG
CCAACATGGAATGCATATGAAGAATTTATCGTGGTGAACGATTTATGTGA
TAAAGACACTTACTTGATGTCTTTCTCCACACTAATCATCTATTGGATCC
TCACACCTTGTCTTTACTCCATTGGAAAAGCAGGCTAAAAAGAAAACGGA
GGAATTACGTAATTATGGTATAAATAATAAAACATCTTTGTGTACTTGCT
GTTCTTCAATATGAAAGAATGGAACAAAAAAAACGAACAGACCATTGAAA
TTGTTTAAAGCATGATCGAGCTCTTCCAGAAAAAAAGTCGTTTATAGGGG
GTGGAAGACATTTTCTCCAGGGGTAATGGAAAGATTGTGAAAAACCGCCA
TTTCCAGGGTCAAAACACGTGGCAAGGGATGGTGGGGAATGGCTAAAAAT
TGAAGTGTTCAGGCGCATATCATTAAAACAATATTATAATATTCTTCACC
CCATTAACAGATTTTTTCTGGAATATTCTATGAGCTTCATATCATTATTA
TCAATTTGTACAATATTGTAGCTTTTGTACAAATGATGGTCAGAACAAAA
CATATTTATTATAAGAAGGTGACCCAGCCGGCACACAACGTCAAAACAAC
ATCCAATTGACATTCATAACATCCAAATAACGTTATTTGAACGTTAAAAC
AACGTTGTTGCCAGCTGGTGAGTAAAGTAATCAATTACTAATACTAACGT
TCTTATAAATTAACCTACTCGCATAATTGACCCAGATGGCTTGTGGTATA
GATTAGCTTCTCATTCGGAATAAAAGCTATATTGGGCTTTTCCAGAAAAA
AATTTGAATATGGAAGGGGGGTGGAGGATATAACATTTTTTGAAAATTTA
CACCCCGGACACTGTGAATTTTGACTCCCTGGACAGCAGGTCTAAACCCC
CCCGGACAAGCATTAGTTGGCCGAATATCAAAATTACCTTCAAACAGAGC
AAAATTACCCTCAAACCAGCTCAAACAGCAAGTTTACCCCTTTGACAAGA
CAAATTTTGTAGATTTTTCACTACCCCCGGACACTATATCCTCCACCCCC
CCCCCCCCCNGGGGTTGAGGATATAACATTTTTTGAAAATTTACACCCCG
GACACTGTGAATTTTGACTCCCTGGACAGCAGGTCTAAACCCCCCCGGAC
AAGCATTAGTTGGCCGAATATCAAAGTTACCCTCAAACAGAGCAAAATTA
CCCTCAAACAGCATTTTTACCCCTCTGACAAGACAAATTTTGTAGATTTT
TCACTACCCCAGGACACTATATCCTCCACCCCCCATGTACGGACATTTTC
TGGAAGAGCCCATTATCAGAAAGCATAAGAAAATAGTTTATGCATTTTCT
TTTTAGTTTAAAACATTTAAAACATTCTGACGATTTTTCGTACATATCTT
GTTGGAGTCGATTCCTAATCTCTTAGAAATTGTATATTTTTTGATTTTTT
CTATAAATTGGTGAAAATTTTATAGATATTTTTGTAGCTCGAGAAAAATA
GTAATTATTTCTCAGTTAATCTTTGTATTGTTTAACCTTATAGAGGCCCC
CCAGCGGTAACTCTGATCACGATATCACGCATTTTTTGGTCTTCAATCAC
GATCACGCAAATCAGCAAAAAAAAAAAATGGACAATCACGCATCCCTTTG
AAAAAGTTCAAATTACGTATACTCAAAAATCTTTCAAATAACGATCAAGT
TTTGACCTCTCATCACGCAATCACGAAGAAAAAATTTCCAAATCACATAA
TCACGCTGCAAAAAAAGTCCCTATCACGTCATCACGAAAACCGCTTGGGG
GCCTCCTTATATATGTCAAAATTTGGGTGTTAGATAAGCAGCAATTCTCA
AAAGTCAAAGATCAAAGCTAAGATACAAAATCATCATATTTCATATGAAA
AATTACTACAAAACTATACTGTTTACTTAAATAAAGTGCAAAATAAAAAA
CAAAAACAAATAATTAGAAATAAATATTTCAACAAAACACTTATCACCTC
TTCAAGTGAAAATGTAAAGAAGAGCCAAATAAAAAAGACAATTCTATCCA
AATAATTTAAACCTAACTTAATAAATAAAAACGAATCATGTTTCTAAACA
AAGATTGGAAATAAATTCAATAGGTGTTATAAATTAGCTGAACGATGGAT
TTATCAAAATGATAAAAAATTGTCTATACAAAATCATCATATTTCATATG
AAAAATTACTACAAAACTATACTGTTTACTTAAATAAAGTGCAAAATAAA
AAACAAAAACAAATAATTAGAAATAAATATTTCAACAAAACACTTATCAC
CTCTTCAAGTGAAAATGTAAAGAAGAGCCAAATAAAAAAGACAATTCTAT
CCAAATAATTTAAACCTAACTTAATAAATAAAAACGAATCATGTTTCTAA
ACAAAGACTTTGGAAAAATTTATCAGTTCATAAAGAGTCAGGGCTCTAAA
CAACGGTCGGACATCGGACATTGTCCGACCCAAATAGCTTCATGTCCGAC
CCAAAAATCATAATTTTCAAGCTAAAGCAACCCTGATCGGACATTTTGTC
CGACCCACTTGAAATCGTTATTTCGAGCCTTGAAAGAGGAACATTATAAG
AGTTTATGCCTCCTCAAACTGAGCAGATATTTTATTCATACTGTACGCTA
TTATTTTATATTTATCTTGATGAAAAATCACTCAATGTCCTCAAATCTGA
TCATATTAAAAGTTCTATATCAATCTCAGCCATACTGTTTCGCGTCAGCA
TTCGGCTATTGCCAAGGCAAATGCCGACGAAAATTTAGCTTTTGCTAACG
TAAAAGTGCTTATTGTAATAAAATTTTAAAATTTTTTGTCGACCCAAATA
ACTCTGAATTAGAAAGGCTGCAATTTTATATCCTGAACTGATCTTCATAA
AAATGATAATTTAATGAAAATAAAGGTATCCACAGTGCAATGCAAACTGT
CCAGATTTCAAAACAGAATTATTTAATTTTTGATTCCATTTTCTTGTCCA
TTGTGAAGTGCATCCTCATCAAAGGACATAGGTAGCAAGTGTGACAAGGT
TGTTTCTTTAGTATCTCTATCTAAATTAACCAAAATTATATCAATATTTC
CAAACTCTGCCATAAATTGTCGACAGGCTCCACAAGGAGAAACCATACTG
CCATTTTTAACATCTGTCGCAATGGCAATAGCTTTAAATTTTGTGATACC
TTCACTAANATTTTTAACATCTGTCGCAATAGCAATAGCTTTAAATTTTG
TGATACCTTCACTAATAGCCTTGCAATATGCAGTTCTTTCTGCACATATT
GTTAACCCAAAACTAACATTCTCAACATTACATCCTGTGATTGTTTTACC
ACATTGTGATAAAAGCGCACATCCAACTCGAAAATTACTATATTTTGCAT
AAGCAAAATCTTTAGCTGAAATACTTGCTTCAATTAAAGCATTTTTATCT
GTTTCTCCGAGTGTCATCTTGTTGTTTTTTAATATCAAACTAAAGAAATG
AAATAAAACATCGATATGAAATATCATCTTTCATTCTTAGTAGGATACAT
GCGTTTTTTATAAGAATAGTGTTTTTCTGGCTGAGGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007092TCONS_00007092Clytia hemisphaericatranscript
TCONS_00007091TCONS_00007091Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007092-proteinTCONS_00007092-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:646087..655423 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13	3.66	1.85	2.75	10.24	8.64	13.33	15.92	10.9	11.28	15.38	6.63	26.82	24.6	14.16	15.91	18.24	19.97	34	34.35	21.88	22.53	17.52	18.88	24.93	25.75	67.31	61.51	13.27	12.3