XLOC_006475 (gene) - C. hemisphaerica

Overview
NameXLOC_006475
Unique NameXLOC_006475
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000130:454671..458223+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006475 ID=XLOC_006475|Name=XLOC_006475|organism=Clytia hemisphaerica|type=gene|length=3553bp|location=Sequence derived from alignment at sc0000130:454671..458223+ (Clytia hemisphaerica)
GTCAAAATTCGATGATATTTTGGCTGCCCGGTGGATATCTGTGTTGATCG
CATTTCGTTTGTATCGTTTTGGAACTCTCGACTTCCAATGATTAGGTAAT
TTATATTCACTACGATAAACGGATGTTTCTATCGTTTCGTTATATTTGAT
TTTTGTGTCCAAGAACTTTGTTGGCGAAACTTCAAttgtgaatttgattt
tttccggTTTAAAATTGTTTAATGCTGTGAAAAGTACATctggtttgttt
ttctttcgtCGATTTATAGAGTCGTCGACATATCGGCGATAGAACAAAGG
CTTCAGGGGTACAACAACTTGTTGTTCTAATTTAGTcataaaaatgttag
aaaacaCTACGGATAACGGACCTCCCATGGTGCATCCATCGGTTTGTTTG
TAGAACTTTCCGTCAAACATAAAGGTGTTTTCTTTGGATAATTTTTCTAA
TAAACGAGTAAAGATTAATTTAGTAGCGATAATTGGTAGTTTTCGTTTGT
TGTATACTTGATCTATAATGTAGTCTATTGTATCCTTGACGGGAACATTG
GTGAATAAGCTTTCTACATCGTATGACACATATTCCTCATCTTCTTGTAA
TGGAGGTTGTTCTTTCAGCATACTTGGAAATTGTTGTGTGTTGTTGATGA
TGTAAGGGAGCATTTTCGTGATGAGAATTTcgattgaaaagttttttctc
gCTCTTGGACATTTATACATACTTTTAAGCAATTTCTCTTTAGAATATAA
TGTCTCTAAGGTAATCACACAAAATGAACTGATTTAGAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCACTGTGCTTTGGATAGGAAAATCTACT
CGCTTTGCAAACAGccaattataaattttcaaagtagATTTTCTCCATTT
CTTTTACTCACAACCGGCCAACCACTGCTTTAGCAAGGGAGTTTTCCAGC
ATAAATTTTCCACTTTAATTCACTTCCCCTTTCTTTTAGATTCGTGTAAA
GTACCGAACGAGTTTCGTGCTTACATCCATCACTGCGAAGGAGATTACTC
TTACTCCAGTGAAGATACTGAAGATTACCGAACAGGATGGGTTGCCATGG
ACAACCAACAAAACAACACTGTCAGTCGAAAGCGTCGTGACTTGACTTTT
GTGATGGCACCGAAACGCCGAGCACGTCGCTCAACATCGAATGGGGTTTA
CAAGAATATGGTAACCGGTGCCGGCAAAAAGAGTTCAAAAGCTCGAAGAT
TAGCGAAGAAAAGGGCGCCCGGTGGTAAAAGGGTGTATTACGTCAGCCCT
AAGGCTCTCTTGCCTGGCGGTGCTGTTGTCTCCTGTTTTGATCGCTGGGA
GCACCGAACGCAATCTGAACTCAGGGGATTTCCTTTTGTGGGAAGAATGC
TGACGTATGCAGGAAGTGGTTACCATGCCAATCTTGGATACAACGAAGAA
ACAGCGTGGACAGTGATTGCTGATCTTCATTCACATAATTGGTTCGATGA
GCAGACACGCGCCATCTTTATCGAGTTCACTGTCTACAACCCGAACGTCA
ATTTATTCGCAACTGCTTTCCTTTTCACAGAAATGACTCCCACAGGTGAG
ACCCtttgagattttttgatttctttgaatttctgTAGCCTCCGTACTTA
CATGTgacaaaacttttctttttcgtgAATTCGTCGATTCAAATCTTCCA
AGTTTCTGCCATTCCTCGTTACTAGtgattaatatttttattttattttt
ttttaactttaggtGGATCCTTGCCATGggctgatttcaaaattttcaac
ggATATCGCTACTCTGTCAATGTGAACGCAATGAGTCGAGTTGCCGAGCT
TATTTTTGTCGGCTTCGTCATTTATTACACTGTGAAAGAGATCCGTAAAC
TCCTGAAACAAAAATGGCAATATTTCCATAGTTTCTTCAACATCATTGAA
ATTCTACTGATACCCTTATATTGTGCCATGTTTTGCTTACTTTTGGTTCG
CTGGTTGACTACAGCCAGAAACATCAAAATGTTCAAAGAGAATCCAAAAG
ATTTCGTGAGTTTCCAATACGCGGCCACTGCTGACGAAGTTTTGCAAGCC
GTCATCGGATTGGTGGCTTTCTTACTCAACATCAAATTTCTTCGACTTTT
CCAATTCGCCAAAACCTTCTTCAGTATAGGCCTCATCATGAAGACGTTCG
TTCATCCGTTGTTGATGTTCATGGTCCCCNATTCTTCAGTATTGGCCTCA
TCATGAAGACGTTCGTTCATCCTTTGTTGATGTTCATGGTCCCCTTTCTC
GGTTTCTTCCTGCTTTTCGCTTACTGCGCCCACCTCGGGTTGGGGACACA
GGTATACGAATACAATTCGCTCGGGCGCACGTGTGTTTCGCAATTTCTCC
ATTTGCTCGGTGCCGTAGATTTCGAACTAATGCAAGAAGCGCGGCCGTTG
TTCGGGCCGCTGTATTATGTGGCCTTCTCAATGTTCATGTTGAACGTTGT
TTTTAACGTTTGTATCGCCATCATTTGTGAAGCGATCGACGATGATTACG
AGGAAGAGTACGTCAAGCAAGCAGGTGATATCCAACTCGTCGAATACATG
ATCACGCGTTTAAAACGTTTCGTCGGGCGGTACGAAGAGGGCGCGTGGCG
TGACCAGTTGGATGAAGAAGTGTCTCGGGATAAATACGAAACCTGTGACG
CTTTGATGACGAGATTGGAGAAAAGTGTTGACGAGATACACAAATATGTC
TTCCAACAAACGGCGAGTTGTAATGAGAAAGAGAAAGGAGAACACGCGAA
TTTGGGCGTTGCTATGGAGAACAGTGTAACTGTGGAAAACGTTGAGGAGG
AGCATAGTGAGACAGGAAGCCGCTCAGTGGAGGAGTGTGATGAAAGAAGC
GTCAACGAGAGAGACGAAGATATGATGCAGATTGAAAGCGAGAAAGAAGA
GGAAAATAAACAAACGAACGAAAATGAAGACCAAACTGTTGACGAAAACA
CTACTTCTCTTGATTCGAACtgaaattttattcattcattttgaATATTG
TGATAGTATTAAAACTTTTTAGAGTGACCTGTGCTATATCAGTCAAggac
tattgcaaattaggataaATGCGAGTATTTAGCCTAAATAGGATAAATTA
TCCTAGCCTATTTAGGATAAAACGAAGAAAAActtaatttattgaataaa
cttTGAGATCTGCGTCGAGATTTGCATGACGTCGCTGTAAAATAAGAGTG
CCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011554TCONS_00011554Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011554-proteinTCONS_00011554-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:454671..458223 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48	0.63	0.53	0.22	0.65	0.27	0.48	0.65	0.65	0.52	0.51	0.91	0.64	0.57	0.5	0.93	0.87	1	0.53	0.62	1.76	1.39	1.74	2.26	6.47	8.43	0.42	0.47	0.26	0.14