XLOC_006920 (gene) - C. hemisphaerica

Overview
NameXLOC_006920
Unique NameXLOC_006920
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000143:558364..562812+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006920 ID=XLOC_006920|Name=XLOC_006920|organism=Clytia hemisphaerica|type=gene|length=4449bp|location=Sequence derived from alignment at sc0000143:558364..562812+ (Clytia hemisphaerica)
gtctaaaggttaatcttttgcaaattttacattAGTGAAAATATAAACCT
GTATAAAACAAATCTACCATCATCAACCATGGAGGATGTTGAAAATGTAA
TTATCTtaatttccttttttgaaaataatttgagtTTTGGTAGTTAAAAC
TGAACATACCTACATAAACTAATCCCAAATTTATTTAACATGTATGATGA
AATTCTACATTAATATTTTGAATGATTCTTTTGAATGAATCAAAATCTGT
GTAAGCTTTGCCTTCTTCtataagaattaaaaaaatattcaaaatgtttt
aagctgctcatgaaaattgaaaatgaacttATTTTCTCTCGTTGTGAAAA
TACTTTAATCCATAGTGGTACGTGTATTGTTATATTTTGTACTTCAGAGC
GCGCCGAAAAAAGAATGGAATCTATCTGTGGATCAAGAACTTCGAATAGA
GGTCGCTCAAGATAATGAAGCCAAAATTATGGTAAGCATATTCAAGACCA
ATTTTATTGACACAAGAGAATGAGAGGTGCTACTGTAATGATGCAAGATA
TTattaaagttattttcaaattgcCTGTCAGTGAAATCAGAAATAGGGAG
GACATTTTGTTATAGTTTGTATTGATAGTGATTTTGTCCTCGTTGAAAAG
ACAATCGCGAGTGGGAAATTATTACGTgaattaaaaaagtttgaaaatga
atatggaaaacgaagaagaaaaattgacTCCTTGTTGacttaaacaatcc
tacaagttaattttttttcagtctgAAGTTGTTGGTTCAAGTGgctttga
ctttaaaaaaaggtttttcaagTCAACCAGTGATCAATCTTGGGTGTTAA
ATTTCAttgaataattttgaaatttttttatattgatgATCTTCTTGCTT
TCTCCAAAGGGGGGAAACTTTTTCCTACCAATTAAAGATGTAATCAAAAA
ATCACTTCTTCGAATAAAAGATTAAATATAAAATGAAGAACAATTTTCTA
CTCTAGATTACAGATGGCCAAGCAGAGATATTTGGTACAGAACTTGTAAG
AAATAAAGTCTACAACTTTCGAAGTCGGGCAAAAGTTGCCATATACACAT
GGCATGGATGTACAGTTCAGGTAAAGATTCTGCTGTAtttaaattcaatt
gatttACAGATTTCCCATTTAAATGTCTATTTGTTTATACCTGctaatct
tttcaaaaaaaattctcataaatCTCATAAATCATGATTCTCAAAATATG
TATtcctcaaaaaatcaaaatacataCTTTATAAAGCACCTCATCCATAT
TACGCACTTTTTGGATGCTTCCAATTCACATTTGCTATTAGTTGATTCCT
AAGATTTTAAAAGTGTTGTTTATATATAATAATGAttagagaaaaaagag
aaaccTTAAAACAATTCTCTCTTTGAGTCGTTTGAGAATATAAGTTATAG
GACAAGCTGTTTGAAGAAGCCAGCTTTAATGGTCATCTGGTTATACATTG
AAAAAAGACTGACAATGGGAAAACTTTAGCAGTAAGACCATCCACTTGGG
GGTATAGAGAACTTTATTTGGGATGTGCAGAAAGAAAATAGTAACAGAGC
CAATACCTGAAGGTGTAatgtttcaattattttcacAGGTGACAGGTGAA
GTAGAAGTTGGATATGTCTCCAGTGAAACACCAATGGTCGTTTATCTTAA
TGTCCACACTGCCATCGAACAAATCcgacaaaaagttgaaaaggaaGGGA
AGAATACCATTGGTCCAAGGGTAAACATTTTGTCTTTATAACAGTGTTGA
ATTCCTTCAtactttatttttataagaaNGAAGGGAAGAATACCATTGGT
CCAAGGGTAAACATTTTGTCTTTATAACAGTGTGGAATTCATTCAtactt
tatttttataagaaccagtaaatttttgatgaggctCGGCTGCTCTtatt
tggcactttgagccacAAATTGTTCTCATCCTGTTCCTATATAGAGGGGG
GAATTGAAGTATTTCAGgatttatacccaatttttactactttgacccct
aaactgCTTGAAATTGcaagtaaaaattgggtataaagtTACTGAGTAAT
TCCAGGCCCAGCTTTGCTCTTTAATtgttggcgattttgagcctcattgt
tcttataaaattattcttacaAAAGAAGAAAGTGTAGATTGCAAACATAT
GATAAGAAAACGCAATCCTAACTCATCATAAAgagactaaaaatttgaaa
aaacagcAGATGCGATCTATAGTAGgataaaattattgaaaatttaaagt
gaTGTTCGCTACACATTTTTATAATGACTTCTTTTGCAttgaaaccttat
gttcttccCATATACTTTGTTCTTGCAAAAAACGTATACTCATTTCtaaa
gtttcaattttaatgaaacaatGATCGTCTACTAATTGTTTAAAGGTGAT
GATATGTGGTCCAGTTGATGTCGGAAAATCGACACTCAGTCGAATTCTTC
TCAACTATGCTGTCCGAATGGGAAGGCGTCCACTTTTTGTTGACCTTGAT
GTCGGACAGGTATGATTAAATTTAAAAGAATTTCTCTTTTCTATAGAAGA
AACTAAGTAGCCACAACAACTTTAAACTTGATTCACACATTTTGTAGTAC
AATTGACGATTACTCAGGAGCAACAAGGAGAAAATTGTAAAATTTGTTCG
AGTCTGTACTGTAGGATGACCAATCAGATTCGTGTAATTATGTTAATATG
TAATGTGTAATTGCTGACTAATTATTTTTTGTTTACCATTCAGGGTTCAA
TAGCTGTACCAGGAACTATGGGTAAGTTTTTCTTCTTTGTGTGTTTAATC
CTTCTTGTGTTCACACTAACCTAATATATGATCTATTGTGGTGCATATAT
AAAAGTCTCGGTCTACAGTTTATTGGGTTTGAAACTTTTTTAATTCCAAA
tccttttaattgaaaaaagattaattACGACAcaggggggtcatgcagtt
ggtACCAGACATCATGATGACTAACTGCAAAATTGTATGTTCACTTTGTA
TTATCATGGTAGAGGGTCATGTGTAAATGAGGTTATGTTTcaaataccgg
gtgacccacgaaaaagttcggacggttTTCGTTGGCTAGGGTctgaaata
aaagtaatataaactcgatctaattttttaaaagatagaggatgctctaa
cttaaactttgagctattactttttaaatttggttcagcggttcttcatt
tatgagcttttaaagtcaaaattcaattattGGAAAgtgaaaaaacacgt
caaaaatgagGTATCAAATTATAATTGTTTTCATTATCTTTAACATTGTG
TTTTTCGAGTGTGCTGATGTGGGGCTGATGTTTTACGACCTCGTTAATTA
GTGTTGTAGGTAATTAAAGTttggaaaataataaattaacaacgaagtag
atttatataaatttattgtaaatatttttatcaaatatattttgcaaATA
GGCAATTATATTTGCcttctttatgaaaatgtcGCGTCTTATGAAAGAAC
AGAAAGTGTGGGTTTGCCTGGAATATGCTAGAAAGTGCATGGTGGTGGTT
CTTTTCTGAACGAATAACTTGttaataaattttgtgaaagtaaagaatct
aaaaaaagttttaaaattgaataaaaatatctaacatGCTCTTTTCTAAC
GATTTAACGACCttgcttgattgattgataataaaacaatttgatacctc
ttttttgacgtaatttcgctctttccgaaaagtgaattttgactttaaaa
gctcataagtagggaACTTgtgggtcaaatttaaaaagtgatagctcaaa
ctttaagttagaatatatctactttctatatattaaaatttcaagcactt
tgagACATTTTTTCGGCCTCGAGACGCCGAAAactgtccgaactttttcg
tgggtcacccggtacttATGGGAGTGTAGTATGAAATGTGTAAGTCGTCG
CTTGTTACGCTTTGTATTATAGCACGAAGTAGATAGGGAAAGCCATATGT
CATCATTCGtgacaaatataacattacttGAATACGTGTATAAGTGAAGT
ATTTTTCGAAGTGTTTTTCAGTCCACCATAGATTATAAAATTGCCCCTAA
AAGTACCATTTGAGCTGAAATTTACAGTACACCACCCCTTTACAGCAGTT
AGTACCCACAAGGTACTAACCGTCATGATGTCTGGTATCAACTGCATTAC
CCCCTGTACGACATCAAAACAACATACATGATCAATGAAATTGGTTTGCT
GATAATTATATGAGTACCTTTCTTCAGTCAATGTGAAAATTGCTTGATAT
TTTCAATTATTAATTTCCTCTTTTTTATATTCTCCAGGTGCATTGTTGGT
AGATCGACCTGCAGACGCTGAAGAAGGTATCGTCTCGTCACCTTGAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012301TCONS_00012301Clytia hemisphaericatranscript
TCONS_00012302TCONS_00012302Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00012301-proteinTCONS_00012301-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:558364..562812 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.59	27.57	70.51	76.27	70.12	55.23	62.73	65.02	46	52.91	38.16	30.08	33.06	26.26	22.69	31.48	50.49	48.75	12.9	14.1	28.92	52.41	45.83	43.7	39.9	44.33	20.05	15.69	24.88	25.35