TCONS_00012301 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012301
Unique Name	TCONS_00012301
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	630

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000143:558364..562812+
coding sequence from alignment at sc0000143:558364..562812+

transcript sequence

>TCONS_00012301 ID=TCONS_00012301|Name=TCONS_00012301|organism=Clytia hemisphaerica|type=transcript|length=630bp
gtctaaaggttaatcttttgcaaattttacattAGTGAAAATATAAACCT
GTATAAAACAAATCTACCATCATCAACCATGGAGGATGTTGAAAATAGCG
CGCCGAAAAAAGAATGGAATCTATCTGTGGATCAAGAACTTCGAATAGAG
GTCGCTCAAGATAATGAAGCCAAAATTATGATTACAGATGGCCAAGCAGA
GATATTTGGTACAGAACTTGTAAGAAATAAAGTCTACAACTTTCGAAGTC
GGGCAAAAGTTGCCATATACACATGGCATGGATGTACAGTTCAGGTGACA
GGTGAAGTAGAAGTTGGATATGTCTCCAGTGAAACACCAATGGTCGTTTA
TCTTAATGTCCACACTGCCATCGAACAAATCcgacaaaaagttgaaaagg
aaGGGAAGAATACCATTGGTCCAAGGGTGATGATATGTGGTCCAGTTGAT
GTCGGAAAATCGACACTCAGTCGAATTCTTCTCAACTATGCTGTCCGAAT
GGGAAGGCGTCCACTTTTTGTTGACCTTGATGTCGGACAGGGTTCAATAG
CTGTACCAGGAACTATGGGTGCATTGTTGGTAGATCGACCTGCAGACGCT
GAAGAAGGTATCGTCTCGTCACCTTGAAAT

Run BLAST on NCBI

protein sequence of TCONS_00012301-protein

>TCONS_00012301-protein ID=TCONS_00012301-protein|Name=TCONS_00012301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MEDVENSAPKKEWNLSVDQELRIEVAQDNEAKIMITDGQAEIFGTELVRN
KVYNFRSRAKVAIYTWHGCTVQVTGEVEVGYVSSETPMVVYLNVHTAIEQ
IRQKVEKEGKNTIGPRVMICGPVDVGKSTLSRILLNYAVRMGRRPLFVDL
DVGQGSIAVPGTMGALLVDRPADAEEGIVSSP

Run BLAST on NCBI

transcript from alignment at sc0000143:558364..562812+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012301 ID=TCONS_00012301|Name=TCONS_00012301|organism=Clytia hemisphaerica|type=transcript|length=4449bp|location=Sequence derived from alignment at sc0000143:558364..562812+ (Clytia hemisphaerica)
gtctaaaggttaatcttttgcaaattttacattAGTGAAAATATAAACCT
GTATAAAACAAATCTACCATCATCAACCATGGAGGATGTTGAAAATGTAA
TTATCTtaatttccttttttgaaaataatttgagtTTTGGTAGTTAAAAC
TGAACATACCTACATAAACTAATCCCAAATTTATTTAACATGTATGATGA
AATTCTACATTAATATTTTGAATGATTCTTTTGAATGAATCAAAATCTGT
GTAAGCTTTGCCTTCTTCtataagaattaaaaaaatattcaaaatgtttt
aagctgctcatgaaaattgaaaatgaacttATTTTCTCTCGTTGTGAAAA
TACTTTAATCCATAGTGGTACGTGTATTGTTATATTTTGTACTTCAGAGC
GCGCCGAAAAAAGAATGGAATCTATCTGTGGATCAAGAACTTCGAATAGA
GGTCGCTCAAGATAATGAAGCCAAAATTATGGTAAGCATATTCAAGACCA
ATTTTATTGACACAAGAGAATGAGAGGTGCTACTGTAATGATGCAAGATA
TTattaaagttattttcaaattgcCTGTCAGTGAAATCAGAAATAGGGAG
GACATTTTGTTATAGTTTGTATTGATAGTGATTTTGTCCTCGTTGAAAAG
ACAATCGCGAGTGGGAAATTATTACGTgaattaaaaaagtttgaaaatga
atatggaaaacgaagaagaaaaattgacTCCTTGTTGacttaaacaatcc
tacaagttaattttttttcagtctgAAGTTGTTGGTTCAAGTGgctttga
ctttaaaaaaaggtttttcaagTCAACCAGTGATCAATCTTGGGTGTTAA
ATTTCAttgaataattttgaaatttttttatattgatgATCTTCTTGCTT
TCTCCAAAGGGGGGAAACTTTTTCCTACCAATTAAAGATGTAATCAAAAA
ATCACTTCTTCGAATAAAAGATTAAATATAAAATGAAGAACAATTTTCTA
CTCTAGATTACAGATGGCCAAGCAGAGATATTTGGTACAGAACTTGTAAG
AAATAAAGTCTACAACTTTCGAAGTCGGGCAAAAGTTGCCATATACACAT
GGCATGGATGTACAGTTCAGGTAAAGATTCTGCTGTAtttaaattcaatt
gatttACAGATTTCCCATTTAAATGTCTATTTGTTTATACCTGctaatct
tttcaaaaaaaattctcataaatCTCATAAATCATGATTCTCAAAATATG
TATtcctcaaaaaatcaaaatacataCTTTATAAAGCACCTCATCCATAT
TACGCACTTTTTGGATGCTTCCAATTCACATTTGCTATTAGTTGATTCCT
AAGATTTTAAAAGTGTTGTTTATATATAATAATGAttagagaaaaaagag
aaaccTTAAAACAATTCTCTCTTTGAGTCGTTTGAGAATATAAGTTATAG
GACAAGCTGTTTGAAGAAGCCAGCTTTAATGGTCATCTGGTTATACATTG
AAAAAAGACTGACAATGGGAAAACTTTAGCAGTAAGACCATCCACTTGGG
GGTATAGAGAACTTTATTTGGGATGTGCAGAAAGAAAATAGTAACAGAGC
CAATACCTGAAGGTGTAatgtttcaattattttcacAGGTGACAGGTGAA
GTAGAAGTTGGATATGTCTCCAGTGAAACACCAATGGTCGTTTATCTTAA
TGTCCACACTGCCATCGAACAAATCcgacaaaaagttgaaaaggaaGGGA
AGAATACCATTGGTCCAAGGGTAAACATTTTGTCTTTATAACAGTGTTGA
ATTCCTTCAtactttatttttataagaaNGAAGGGAAGAATACCATTGGT
CCAAGGGTAAACATTTTGTCTTTATAACAGTGTGGAATTCATTCAtactt
tatttttataagaaccagtaaatttttgatgaggctCGGCTGCTCTtatt
tggcactttgagccacAAATTGTTCTCATCCTGTTCCTATATAGAGGGGG
GAATTGAAGTATTTCAGgatttatacccaatttttactactttgacccct
aaactgCTTGAAATTGcaagtaaaaattgggtataaagtTACTGAGTAAT
TCCAGGCCCAGCTTTGCTCTTTAATtgttggcgattttgagcctcattgt
tcttataaaattattcttacaAAAGAAGAAAGTGTAGATTGCAAACATAT
GATAAGAAAACGCAATCCTAACTCATCATAAAgagactaaaaatttgaaa
aaacagcAGATGCGATCTATAGTAGgataaaattattgaaaatttaaagt
gaTGTTCGCTACACATTTTTATAATGACTTCTTTTGCAttgaaaccttat
gttcttccCATATACTTTGTTCTTGCAAAAAACGTATACTCATTTCtaaa
gtttcaattttaatgaaacaatGATCGTCTACTAATTGTTTAAAGGTGAT
GATATGTGGTCCAGTTGATGTCGGAAAATCGACACTCAGTCGAATTCTTC
TCAACTATGCTGTCCGAATGGGAAGGCGTCCACTTTTTGTTGACCTTGAT
GTCGGACAGGTATGATTAAATTTAAAAGAATTTCTCTTTTCTATAGAAGA
AACTAAGTAGCCACAACAACTTTAAACTTGATTCACACATTTTGTAGTAC
AATTGACGATTACTCAGGAGCAACAAGGAGAAAATTGTAAAATTTGTTCG
AGTCTGTACTGTAGGATGACCAATCAGATTCGTGTAATTATGTTAATATG
TAATGTGTAATTGCTGACTAATTATTTTTTGTTTACCATTCAGGGTTCAA
TAGCTGTACCAGGAACTATGGGTAAGTTTTTCTTCTTTGTGTGTTTAATC
CTTCTTGTGTTCACACTAACCTAATATATGATCTATTGTGGTGCATATAT
AAAAGTCTCGGTCTACAGTTTATTGGGTTTGAAACTTTTTTAATTCCAAA
tccttttaattgaaaaaagattaattACGACAcaggggggtcatgcagtt
ggtACCAGACATCATGATGACTAACTGCAAAATTGTATGTTCACTTTGTA
TTATCATGGTAGAGGGTCATGTGTAAATGAGGTTATGTTTcaaataccgg
gtgacccacgaaaaagttcggacggttTTCGTTGGCTAGGGTctgaaata
aaagtaatataaactcgatctaattttttaaaagatagaggatgctctaa
cttaaactttgagctattactttttaaatttggttcagcggttcttcatt
tatgagcttttaaagtcaaaattcaattattGGAAAgtgaaaaaacacgt
caaaaatgagGTATCAAATTATAATTGTTTTCATTATCTTTAACATTGTG
TTTTTCGAGTGTGCTGATGTGGGGCTGATGTTTTACGACCTCGTTAATTA
GTGTTGTAGGTAATTAAAGTttggaaaataataaattaacaacgaagtag
atttatataaatttattgtaaatatttttatcaaatatattttgcaaATA
GGCAATTATATTTGCcttctttatgaaaatgtcGCGTCTTATGAAAGAAC
AGAAAGTGTGGGTTTGCCTGGAATATGCTAGAAAGTGCATGGTGGTGGTT
CTTTTCTGAACGAATAACTTGttaataaattttgtgaaagtaaagaatct
aaaaaaagttttaaaattgaataaaaatatctaacatGCTCTTTTCTAAC
GATTTAACGACCttgcttgattgattgataataaaacaatttgatacctc
ttttttgacgtaatttcgctctttccgaaaagtgaattttgactttaaaa
gctcataagtagggaACTTgtgggtcaaatttaaaaagtgatagctcaaa
ctttaagttagaatatatctactttctatatattaaaatttcaagcactt
tgagACATTTTTTCGGCCTCGAGACGCCGAAAactgtccgaactttttcg
tgggtcacccggtacttATGGGAGTGTAGTATGAAATGTGTAAGTCGTCG
CTTGTTACGCTTTGTATTATAGCACGAAGTAGATAGGGAAAGCCATATGT
CATCATTCGtgacaaatataacattacttGAATACGTGTATAAGTGAAGT
ATTTTTCGAAGTGTTTTTCAGTCCACCATAGATTATAAAATTGCCCCTAA
AAGTACCATTTGAGCTGAAATTTACAGTACACCACCCCTTTACAGCAGTT
AGTACCCACAAGGTACTAACCGTCATGATGTCTGGTATCAACTGCATTAC
CCCCTGTACGACATCAAAACAACATACATGATCAATGAAATTGGTTTGCT
GATAATTATATGAGTACCTTTCTTCAGTCAATGTGAAAATTGCTTGATAT
TTTCAATTATTAATTTCCTCTTTTTTATATTCTCCAGGTGCATTGTTGGT
AGATCGACCTGCAGACGCTGAAGAAGGTATCGTCTCGTCACCTTGAAAT

Coding sequence (CDS) from alignment at sc0000143:558364..562812+

>TCONS_00012301 ID=TCONS_00012301|Name=TCONS_00012301|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0000143:558364..562812+ (Clytia hemisphaerica)
ATGGAGGATGTTGAAAATAGCGCGCCGAAAAAAGAATGGAATCTATCTGT
GGATCAAGAACTTCGAATAGAGGTCGCTCAAGATAATGAAGCCAAAATTA
TGATTACAGATGGCCAAGCAGAGATATTTGGTACAGAACTTGTAAGAAAT
AAAGTCTACAACTTTCGAAGTCGGGCAAAAGTTGCCATATACACATGGCA
TGGATGTACAGTTCAGGTGACAGGTGAAGTAGAAGTTGGATATGTCTCCA
GTGAAACACCAATGGTCGTTTATCTTAATGTCCACACTGCCATCGAACAA
ATCcgacaaaaagttgaaaaggaaGGGAAGAATACCATTGGTCCAAGGGT
GATGATATGTGGTCCAGTTGATGTCGGAAAATCGACACTCAGTCGAATTC
TTCTCAACTATGCTGTCCGAATGGGAAGGCGTCCACTTTTTGTTGACCTT
GATGTCGGACAGGGTTCAATAGCTGTACCAGGAACTATGGGTGCATTGTT
GGTAGATCGACCTGCAGACGCTGAAGAAGGTATCGTCTCGTCACCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006920	XLOC_006920	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012301-protein	TCONS_00012301-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000143	supercontig	sc0000143:558364..562812 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.5901	27.2557	70.5117	76.2659	70.1178	55.2284	62.7304	65.016	43.608	43.6168	38.1635	30.0822	22.4537	23.5095	20.847	21.304	44.5954	38.3983	12.8997	13.0315	28.9244	31.1912	35.8545	41.4434	39.9004	44.331	18.0874	12.8239	24.8799	24.5136

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR032319	CLP1_P
IPR032324	Clp1_N
IPR027417	P-loop_NTPase

Blast

[Close]

BLAST of TCONS_00012301 vs. Swiss-Prot (Human)
Match: CLP1 (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens GN=CLP1 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.128e-69
Identity = 99/174 (56.90%), Postives = 133/174 (76.44%), Query Frame = 1

Query:   91 ENSAPKKEWNLSVDQELRIEVAQDNEAKIMITDGQAEIFGTELVRNKVYNFRSRAKVAIYTWHGCTVQVTGEVEVGYVSSETPMVVYLNVHTAIEQIRQKVEKEGKNTIGPRVMICGPVDVGKSTLSRILLNYAVRMGRRPLFVDLDVGQGSIAVPGTMGALLVDRPADAEEGI 612
            ++  P  ++ L  + ELR EV      ++ +  G AEIFGTEL RNK + F + AKVA++TWHGC+VQ++G  EV YVS +TPM++YLN HTA+EQ+R++ EKE +   GPRVM+ GP DVGKST+ R+LLNYAVR+GRRP +V+LDVGQGS+++PGTMGAL ++RPAD EEG 
Sbjct:    7 DDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEER--GPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGF 178

The following BLAST results are available for this feature:

BLAST of TCONS_00012301 vs. Swiss-Prot (Human)

BLAST of TCONS_00012301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CLP1	1.128e-69	56.90	Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo...	[more]

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TCONS_00012301 (transcript) - C. hemisphaerica