XLOC_007328 (gene) - C. hemisphaerica

Overview
NameXLOC_007328
Unique NameXLOC_007328
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000162:265612..270834+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007328 ID=XLOC_007328|Name=XLOC_007328|organism=Clytia hemisphaerica|type=gene|length=5223bp|location=Sequence derived from alignment at sc0000162:265612..270834+ (Clytia hemisphaerica)
GACGGTTTAAAAGATGTACTACTCGAGTTATGATAATATATGATAGATAT
TTCATATATATGCAAGCTgacaaaacaataacaattttACCTCGAAATTG
GATATATGTCCCCTAAAAATAATACTGCGGCGGAGAAGTACTTATGAAGT
GGCGATTGAAATAtggaaaacaataaaaatagaaGCAATCCTACAGAGGG
TCAACAGCTTTTACAGACTGAAAACTGCAACAGAGGGGAGAGTCATACAC
GCAGCAAAATGAGGAATAGCAAGATTTTCAAAGAGATTGTGAGCCTTCTA
TACTGGACCATGTTGGCGGCTTGTACAGTGGGGCCGGGAACCGTAGTCAC
TTGCGCAAGGGCCGGTGCTGAATTTGATTTGAACTTGATTTGGGCGTTGA
TTTTTGCTTCCATTCTCTCATATACTTTGCAAGAAGGTAAAGAATTTGAG
CACAGACAGAAATGATGAACGTCGTTTTACAGAAACACATTTTCTTTTCC
ATCGtctattctattctatttaGGGTGGAGTTATAACCATGCCAACCCTC
TTAGCTTTCATTACACTCGGAACATTGACAAGTTACTTGTTAACTTTGCT
AACTTATCTGTACGTAATATCATTATCCACCATTAGGTACAGCAAGACTG
ACAATAAAAAGTGGTAAAAGCCTTGGTCAATGTCTTCAAGCAAAATATAA
ACATGGTCGACTGATATGGGGCGTGGGCGTTATTTGCTGGGTGGTGGCGG
TCTGTGTATTTCTTGGTAAGTTGCCTCAAAAAATGTTTAGCNCTAAAAAT
AATACTGCGGCGGAGAAGTACTTATGAAGTGGCGATTGAAATAtggaaaa
caataaaaatagaaGCAATCCTACAGAGGGTCAACAGCTTTTACAGACTG
AAAACTGCAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAATAGC
AAGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGCGGC
TTGTACAGTGGGGCCCGGAACCGTAGTCACTTGCGCAAGGGCCGGTGCTG
AATTTGATTTGAACTTGATTTGGGCGTTGATTTTCGCTTCCATTCTCTCA
TATACTTTGCAGGAAGGTAAAGAATTTGAGCATGGACAAAAATGATAAAC
GTTATTTAACCTAAACACGTTTCTTTTACATCATCTATTCTATTCAATTT
AGGGTGGAGTAATAACCATGCCAACCTCTTAGCTTTCGTTACACTCGGAA
CATTGACAAGTTACTTGTTAACTTTGCTAACTTTTATCTGTACGTAATAT
CATTATCCACCTTTAGGTACAGCAAGACTGACAATAAAAAGTGGTAAAAG
CCTTGGTCAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATATGGG
GCGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGTAAG
TTGCCTCAAAAAATGTTTAGCCACCTCGGTTTAAAGCtcattcgattgac
aaaaagGCAAAAAGTCATTGCACTATTTCAATTATttatttcaattcatt
tttcTCCAGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCAGCCTGTC
TAAAAGCTGCTGATTTTCTTTTCCTTCATACTATAGGAAACACTTTTTAT
TCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTACCCGG
TGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTATGGTT
TCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGGAGTA
GGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAGTTGT
CGTTAAACTAGGTAAATTTTATTATCTCATGTTACAAGCCTTGAGAAGAG
ATTATAATTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTTTAACTAT
TATTCTTTGCCAAATCATGACTCATAGATTAATTATGTATGTGCAGTAAA
CAATAACCTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCTCCAAATC
TTATTACTTGCTAACACACTTTCCGTGGTGAAGCATAAACAATTACATTA
CATGAAAACATGGTTCTTAATTTTgatgacaaaaattctttctATACCAC
ATTATANAAGGCAAAAAGTCATTGCACTATTTCAATTATttatttcaatt
catttttcTCCAGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCAGCC
TGTCTAAAAGCTGCTGATTTTCTTTTCCTTCATACTATAGGAAACACTTT
TTATTCATGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTAC
CCGGTGCTGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTAT
GGTTTCATTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGG
AGTAGGACTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAG
TTGTCGTTAAACTAGGTAAATTTTATTATCTCATGTTACAAGCCTTGAGA
AGAGATTATAATTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTTTAA
CTATTATTCTTTGCCAAATCATGACTCATAGATTAATTATGTATGTGCAG
TAAACAATAACCTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCTCCA
AATCTTATTACTTGCTAACACACTTTCCGTGGTGAAGCATAAACAATTAC
ATTACATGAAAACATGGTTCTTAATTTTgatgacaaaaattctttctATA
CCACATTATATCATTTCCATAGGTTTAGATGGTGCACGATTCGCTAAAGG
ATTGCTGCCGATCAGTATGCCAGCAGGATCCACCAACATTGTTTTAAGCT
TGGTAGGAACAACTGCTATCGGCTTCAACCTATTCTTAGGTGGACAGATG
GCAGAAGGGAAAACGCTTCCACAAGCACAAAGAGGGATTGCATTTTCAAC
AGTAATGACTCTGATTGTGTCAGTCTTAATCATGATTGTTGGAGATGGTA
CAGAGTTACAGAAAGGGTTATTCACCATCGCCAACTTGTCTGGTACTGTA
GAAAATCTGACTGGAGGTGCTGGTCTTTGGATATTTTGTCTGGGCTTCAT
TGCAGCCGCTTTAAGTTCCATGTTAGTGTGCCCGTTAGGATCAGTGATGA
CTTGTGAAAGCGTTTTCAATATTTATGCGGAAAATGACGAGCAGTCGGCA
ATGGAGTATAAGAGCACTGGAGAGAAGGAACAGGATCAAGGTACAAAAGA
AGGGGAGCAAGTTATTCAAATCCAAAGTGAAGGCCAAGAAAGATTGTTTC
CCAAGAAATATGCACGTGCTTTGATGGTCATAATGGTATCCGTAGCTGTG
ATTGTGAACGCTGCAAATGCACCACCTGTTAAAGTCATCTTGGTCGCTCA
AGTAAggctttttcttatttttctaaactAATTTTGACACAAGGCATACG
TACTGATAGCTTCTAAGATCTTAATAAGGCCATCAGgtgttaaattttga
aaataataaaaacctACTTACTTGAAAACGTTCTCCAACAACTGATTTGT
GCGTCAACCTGAAGTAAGAAATAAGCTGGAAAATTATCTTATCTACACTA
AGCAACTGAAGTTTATATAATGTTCATGGATTTTTTCATTAATTGAAGTA
CCTTTGAATCTAATTTAGGTGTTCAATGGTTGTCTTCTCCCCTTCTTTTC
TATCTGTCTATTGATCTGTTTGAACGATCCACAATTTATGGCATCTGCTC
CACAAAAAGGATGGTCCAATTGCTTCCTCACTACTGCTGTCATTATAACT
TTGTTCCTGACCGCAAATTCCATGATTCAAAACCTCTTCGGATGGACTAC
AACTAATGGTCATATCTTGAAATCCACATTTGACACCatcaaatttagtt
tttctggAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacT
AGTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGA
AGACCTAAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTA
TAGAACCCCCTCTAATATATCTATACATGACAAAAGAAATACAAATTATC
CTCGACTCTGGTAGTCATTAAAACCTACAATGGCGCAAAGAGCGACAAAT
ACCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATT
TAAAGTATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTG
AACTAATGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtatt
tttgtttacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACA
CAAAGATagaattttaagaaagaaatccttaatttttaaaattgcatttt
cgattttcatttttaagctCAATGGCCTATACTTTAGACGTAAACAATAA
GAGTCATAGGAAAAATATCTAGCTCATTCATAAATTCTCTagataaatac
aaaaatatacaaaaaacaaatataaacctTCCTTTTTGATGACCATCCCA
CCCTTTTTTCGGGAAATGTACGTACCCTAGTAAAACATTTTTCAGCGCTG
GCATTTAGTTAAATTTTCAGTGAAATAAGTCTTTTGAGAGTCTTTTAATG
GCCAATANcaaatttagtttttctggAGTGATTGCGGTGGCGATTAtgct
ttgtttgtttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAAAGTTTAA
ATTGCTTTAATCGTGTAGAAGACCTAAGAACATAAAAGATGATGATGGTG
AATTTTATTAGTAACACTATAGAACCCCCTTTAATGTATCTATACATGAC
AAAAGAAATACAAATTATCCTCGACTCTGGTAGTCATTAAAACCTACAAT
GGCGCGAAGAGCGACAAATACCACGAGCGAAAAACCCACGTGTCCGGAAA
AAGTAGAACAGATTTTATTTAAAGTATAATCATCAGAACTCATTATTTTA
CTTGAATTCAGAACAATTGAACTAATGGTATGGAATTTCTTTGTCGAATC
GATAAATACTAAAagtatttttgtttacttaaatTTTGTTCCAATATTTC
CCCTAACCCTATAGACACACAAAGATagaattttaagaaagaaatcctta
atttttaaaattgcattttcgat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00013091TCONS_00013091Clytia hemisphaericatranscript
TCONS_00013092TCONS_00013092Clytia hemisphaericatranscript
TCONS_00013093TCONS_00013093Clytia hemisphaericatranscript
TCONS_00013094TCONS_00013094Clytia hemisphaericatranscript
TCONS_00013095TCONS_00013095Clytia hemisphaericatranscript
TCONS_00013096TCONS_00013096Clytia hemisphaericatranscript
TCONS_00013097TCONS_00013097Clytia hemisphaericatranscript
TCONS_00013098TCONS_00013098Clytia hemisphaericatranscript
TCONS_00013099TCONS_00013099Clytia hemisphaericatranscript
TCONS_00013100TCONS_00013100Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00013098-proteinTCONS_00013098-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:265612..270834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15	0.14	0.28	0.15	0.04	0	0.06	0.1	0.12	0.06	0.01	0.36	29.31	25.26	14.09	23.43	1.51	1.4	7.25	5.2	1.28	1.15	0.52	0.4	0.55	0.54	0.14	0.26	0.38	0.33