XLOC_008469 (gene) - C. hemisphaerica

Overview
NameXLOC_008469
Unique NameXLOC_008469
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000204:411760..417984+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_008469 ID=XLOC_008469|Name=XLOC_008469|organism=Clytia hemisphaerica|type=gene|length=6225bp|location=Sequence derived from alignment at sc0000204:411760..417984+ (Clytia hemisphaerica)
CTCAAAACTTCAACAACGTGAGTGAAAGGTAAGGGACTTTTCTGTAAGCG
TGAAACTAATTCTGTAGgttagattttaaatttttctatctacgctagat
caaaaatagtttttatgaaaatctttttttggaaataaaacattttttca
gcTTGACCTAAAAGATTTGATCCAATTTTTCTATTGTGTGAAACGTGGGT
GTTTAATTCTTCCTTTTTCGATTTCTTAACAGAAACAAGACATAACACAA
ATGGACCGAAATAACCTCGAGCTAGCGCTGGTGAGTAATTTTAgataata
ttttttattattattacacTTGCTGATTCTCCTGTTCACCAGGTAGCCCT
GTAGAATAGCTGTACATCCTGAATAAAGAACACGTCGCACTCCGTTAAAA
AACCATTTTTATGTAATTTGTCGCTTTTCCACTACAATGTCCagcccatt
gagtttaaagcccgaagggctagagttcaatctctaacttttttcaggca
agaaaaagtgacgacagattgaatctagcaattcctttgtaaAGCTCTTT
CACGATAATACGGCAGCAGTTGGAACTTTCCCTAACCGGAAATAACCTCA
ATATCAGATTATCTTTCTCTAAACCCCCCTCAATTTTAAGACTATGTAAT
TGAAAATTGCTACGCCACTAACCACTTTTTTAATTATGTCTATTTATCAG
GAAAACTTGCAGCTTAGAGAGGAGCTCCAGGATTGGCAGGATCAGTGCCA
CATCAATCATCATCTCTACCAGGTAATTCTATTttatctaaattttgaaa
aaagggaTCTCAAATCGTAATTTCGGAAGGGGTCTTCAGATCTTatgaat
ataaatatttattattcttatcaaacaaTCCAAACGGCCGATTTGTGATT
TTAATCAACAAGACAGTTGTTAGCGGAGCAAACTTGAGTATCATCTTTAA
TTATCTACGCCTACAGCCTGAAAGCTCTCAATGGTTGCCAAAAGTGTTTT
TCGATAGATTTAAACCTTAGCTGAGAGGCAAAAGTTTTAAGCCCTTGGTT
ACTCATAGCAACGGTATTGTATCTTTCATACCAATGGAAAGACCTCgaaa
ttctaaatttttataattgattgaaatttttatgacgtcCTGCCTCGTTA
ATAAGCCCTTTGAAGGTAAAAAAAGCTAAGaaatgtttcaaattttgacc
ggattatttttaattttctacaACCATCGATGAGTAACCAATGGACTTAA
AGTATTTGCCTTTCTCGGCCAAaagtagcctgggaatccaagggTTAAAC
TTTTCCCACAGTCTAGCTTATATCatatttttgcttgttttatttAACTT
TTAACGCTAGGGGTAGTACCAGCAGTCTGATTGGCCAGATTTTGTGCGTA
CagtaaaagtgaaaaccccccTTTTAGATATGCAAACTTTGTATGAGAAC
CCTTCATTGAAAAAAAGCTACGAATGCCATTTTGGAATATGCCTAAAATT
GTATATAAACAGTCAAAACTAACTGTTGATAGAAATATGAATGATGTGGG
AATGATggtaaaattcatcaaaaattttgttagTTTGAAATGTATTCAAC
TATAGGTTGACAAGCCTCACATTTGAAACTGTTCCTCTAAACAGTGAtcg
aatttaaaattttatgttttgatttatatttttcaGCAAGCGTTGGCACG
GATCGCTGAGTTGGAGGTAaatatttcatcaaatattTGTACCTTTATCT
TTAccggggtttcagggggtacctgatTCCACAATTCctccaattttttc
tccaatttccgtgaaccaaaattccgtcaccgaaaattcctttgagcTTC
AATTTTTTCGTCGAAAATTCCAcaaatttggaatatcttttaccaattcc
gaaattccgcaattttttttgctaaattccgtttttccgcactaaaattg
tctaattttccgtctccgtcagagaacccaatttccgtaattccgtctta
attttcgccaaattccgccactccgtccgaaaaaaagggccgattccgct
cctccgccaaacgTGAACCCCCCTTTACCTTTTTATTAGTATGTATTGCA
CAATAACAGGTCTCTGATGCCCTTAGATGTTCTGGACCgcacgcgcgcta
cactgttcgacgcagcgagtcttaTTGGATAGTTTATTTAGCCTAAGCCT
GATAAGTATTAAAATCTTTTGGCTCCATTTAAACTTTACATATATATTAT
AATGCGCTTAAATCAGAGCGGCTGTATGGGTCAGGAATACTGTTTTCCAG
TCAAATTTTTGGCTGAATCCCAGCataccaaaaattgaaaaaataacacT
GTCATACTGGTTTGCAGCGGTTGCAAAAATAAGGTTAATCGCCATCACCG
TCTGATttcaaaataccgttttccaGACATTTTCATCAAATCCCTTAATC
CTGTACAAAATAAACACAAGTTGGCAAGGGTAGAACCCCCAGGCCTTGAA
GCAAACATGTGAAACCTCTAGGCTGCATATCACGTTCATCAAATGCAAAA
TCTTGTTGAAAATTCTCTTCAATTATACCTTATACCTTTATTCTCAACTA
AGAGTTCtcatcttttatttttatacagCACAATCCACCTCAGCCCCAAC
CACCCATCCAGCAGCCCCAACCGCCCGCACAACAAATGATTGGTGTGAGT
AATATTGTTCATATTCATCAAAAAAGTAACATATGTGATACACAATCAAA
CAGTTTCCTCTCCAGACTtgagttgaaaatttcaaacgtTAAGCTTTTGA
CATTTATTTATCAATATAAAGttcatacccagcacctatttttcaGTCCA
CTCTGCTTGAATAagagttgaaaatttcaaacgtCAAGCTTTTGACATTT
ATTTATCAATATAAAGttcatacccagcacctatttttcaGTCCACTCTG
CTTGAATAAGAAACAAAGTCTCTTCTTATAATTTCATTTACACTATTTCT
ATTGCTGGATGTCGCTGCTAAATTGGCTATTCGTTTCatagattttattt
caaaaccaaaCTGTTATACTGTACTTGCAGAAAAATCTTGCAcattgaat
attgaatattgTTTGGATAGGATTCTCCTCTATCATAGGAACGTTTTGAA
AGATAAAGTAATTTTACAAACATAACACGTTGAAACGTTGTTAATCGAAT
AGTTGATGATTCCTAACATTAAATTTCTCATTATATTTTTAGGGAGAATA
TATACGTCTAATAGTACCCTGCCGGAACGGTGCTCAGCCTCACCGGTACT
TGTACCAGGGTAAGGAATTCACCTTTTCTCTCGCAGCGCTTTGCGGCTTC
ACGAAAGGCATTTTAAATTCGGtcatttcaaactttttcaaattctccCA
TTTTTCAGTGCGAATTGAAGATACAAAGATTGAAATAGGCAGCAGTGCCA
AAGTTAAGCTCAACTGTTTGAAATTGTAAGGTCGTTTCCCCGAATTCAAT
ATTCATGTAATCATGTAGACTAGAAAGCGTTTGCGTTTCTTAAGATATAG
AAACGCGGGAAtagtgtttgaaaatttttcttataatcgATATTTGATAC
CTtaattgcaaaatattatggCATATAGGTATTTTCAATTGCTGTAAAGC
TTACGTCGTTATATTTGTATTTGGATTGTTTTATATTCAACTTTATTGAC
AGGTtggatcaattttcaaaccCTGGTCCATATGGATGCCGTTCCGGCAC
AGGTCCAAGTCTTGATACCTGGAGGCAGTAAGTtcaattgtaaattttta
atggTGTGAAACATCTATCTAGAAACAAACTATCCCAATAGTAGATTTTT
AACTTACAGACTCTATATCTTTATGCAAAACAAACGGTATCAATATTATG
GGAATCAAGATTTTGCGTAGTAATCGCTTTTGAATTTCCTTTAGCGAGTA
AGCAAAGCCATAAGCTGCCAGTTTGAAACACATTGTGAATAGTAAAAAAG
AGGTTGTTATTAAAATCCTATTGAGTGCCACTTATTATAGCAATTGTTCA
ATTTAGCGCTCTACTAGAAAATAGTGAAACAAAATCATCTTAGACCAAAA
ATGGGAAAACGCAACTTCTTTTTCACCAGAACAATGCATTACACGTCCAT
GCTCTACATTAGCTTTGAGAAACTAAACTTTATCTTAAGATCAACAACAG
CAACAGCAGCAAGAAGAACCACAACAACAGCACCAGCAGCAGCAACAACA
ACCACAACAGCAGCAgcagcaacaacaacagcaacaacagcaacaacaac
agcaacaacaacagcaacaacaacaacaacaacaacaacaaaatccaGTA
GCTGTGCCTCCAGTTGTGGCGCCACTGCCCGTTGCCAATATTGACCAGCC
ACCCCCGCCAGCTGTTGACCCTGCCTTCTTGGTCCAGCCACCACTACCCG
CTGTGGAAGAAGCAGAGTAACGTAAGAAATTAAATTACTTGGCacgctac
acgcttttttataagaatggtgttttttcatttcatcatggatattctta
acttttttgcgaaaatcatccaaaaatattcttacgctATTCTTAGATTA
AGATCGAAAATGGGCAATCTActggttaaaatgcattaaaaatggcattc
tcagtttcagttgctaaattccatgatggtaatattcttaccatgttctt
aattttttggccattttcatcatggacattcttataaagtgtattcttat
aaaaaagcgtgtacctttAAAAGATTAATTTCTATAAAGATTCTTTCTAG
TCTAAAGTAAGATTCAATGGCCTCTTCAAATGGGTTATTTTCTCCCACTG
GCCCGtaacaaaatgaaatttttaaaaagtctctttttttgttttcaaaa
atgaacaTGGATTTTTGGAGACATGCACAGGTCTGCTATAAATTCTAACT
CAAAAAATTTCAGAgggaaaggtaaaaaaaaaatctttttattgcTATTG
GTTTCCCGaacgaaaataaaataaaggaCTTTATGTTATTTGCTCCAATG
TGGTTATTTTCATAGTAAACTAAATATACAAAATTTGTTCTATTTATATA
CCCATGTGATCTTCTAGTCACGTGGTCAAAACCGTCAATCATATTTCATA
TAGTTTTCCATcagaaattcaattttaaaagttaatttgctcaaaatctt
tttctttaaaacaagGGACCCTTTAACTTTTTTAGGTATTTCAACACCTC
TTGtcgtaaaatattttcttatgtAGACGTGCACGACCTTGCCGGTTCTA
GCCAGATCTTGCAAGAAATGACACAAGATCTTACCAAACTCTTGCAAGAA
ACTTCAAATAAGAAATTGAAGAGCCACATCTTCTAAACTCTCATAAGATC
TTAACAAGTTTTTTGACCAGGGATAGCATTTATGATTTTGCGCGTTTTCG
TTTTGCATATGAAAGCCGCACTAGGACAAAAGCCTGGGGGCACTATGTCG
ATATATCGGCATGTATTGCCAAAAAATTTGCATTGGAAAtcaaaccctta
cagtgcagaccTTGAGCAGTAAAAAGGTGCCTTTATAATGCATTTTACCG
AATTTTTCTGACCCTTTCAGCGTAGTTAggttcatatcttattttgctga
agctaCCTAAAGATGACTCTGAAATGGCGACACATTGTGTAGAACGAATC
AAAATGGGTACAAGTCAAAGACAGACCAGgcttaaaaatatatatgataa
ttttatgacttttttatttttagctgtCCACCGGAATTATGGATTCGCTG
GCTCATATTCTCGTATTATATGAATCTGAAATGGTAAAATAGATTGCAAG
TAAATCAAATGGATCTTACAAAACCTTGAAGAAAAGAGTAGTGAATGTCA
TTACTACGACGTGTCAAATATAAACATATCTATCCAAGTGCTACTGTAGA
ACAAAAGCATCAAGAATTTAGAATCACAGTTATTCAAGAGATTCTTATAT
TCATTTTATTCGTCAAGTTTTTGTTTGCAAATTACTTTACCAAGATCTGT
AATCTTAATAGCCTGCCTCAAAAGTATGTGAACACTTAAGATTTAGGCCT
ACTTCAAAGTGCTGCCACTTTTTATCCaagaaaaagtacaaaaaatgtga
aacagatttgaaatcagcaagcttaaaatatttcataagaTTTCATGTTA
CGATTTTTAGCATAGGAAATTTTTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00015111TCONS_00015111Clytia hemisphaericatranscript
TCONS_00015112TCONS_00015112Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00015111-proteinTCONS_00015111-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:411760..417984 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.89	12.26	7.76	5.25	0.53	0.83	0.41	0.78	0.32	0.76	0.36	0.36	0.6	0.38	0.72	0.7	1.1	0.74	0.57	0.78	2.87	2.38	12.5	10.94	0.13	0.26	2.39	1.77	10.99	11.24