XLOC_009713 (gene) - C. hemisphaerica

Overview
NameXLOC_009713
Unique NameXLOC_009713
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000266:13971..20200+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009713 ID=XLOC_009713|Name=XLOC_009713|organism=Clytia hemisphaerica|type=gene|length=6230bp|location=Sequence derived from alignment at sc0000266:13971..20200+ (Clytia hemisphaerica)
GTCTCTCATAAAAACATTCTTTTCTCTCACGCTGCCAAAGTGAACAGTAC
TTGCTTTCTTACTTTAGTTTTGGTTTTTACAATATCTTGCCATAAGCATG
AGTAAACCACTTTCTGAGTCTGAGGTCAACCTTCTAGAGCAAAGTTTGGG
CTGGAAAGATGAGTGGTTGGATGATCACGAGAAGATTGTAAGTCTGAGTG
ATGAACGTGTTCCCATGTTTACCATTCAGATATTATTTCTTCTTAGGAAA
ATCTTACCCTCCACCACTGCTTTGTTTAAGATTCTTTGTCTCCTGGTTCC
CCAACAAGGTTTCTGTCTACCTACTGATGCGAGAGCGTTAgcacgaaaaa
tgaaaaagctcAATACAGAAAGGACATCTTTGTTGAAGAGTAAAGGTGGC
AAGGAAAAGTTGGAGGTAATTCATAGTGGTTCTTTCTTTGAATGGCTCAA
AAAACATAAAGCCCCAACTGTTTCAAGTACTTGCCCATCAAAAACAAGCG
AGCAACTCCAAAGAGAGGAGgactttcaaaatcaaaaacaaaaattggag
CTTCTTTTAGAGGAGGAAAAGTCCAAATCCAGACGTTTAGGTGacctcat
aaaaaaagaaaagtcaaCCTCTGAATTGTCAGCTAAGACAATTGACAATT
TGAAGGGTGACAAAGTTCACCTGAACAAGGTTATTGGTGGTTTAAAATCT
TCGATTGCAAAATATCAATCTGTAATCGCTGCACAAAAGCTCAACTCAGC
ACAACAGTCTTTCAAGGGCTGTAATCATGACACTGGCCTTGGATTTATCA
CCATCACACGCTTTTGTGAAGGGGAGCCCCGAATATTTGAGGGAATTAAA
TACACTAAGGATCTTGCATCCATgactttcaaatcaaataatCAGCCAGC
AATTTTTACTGCTATTTCAAGCAAGCACTCTAACTCCACATTATGTGATA
AACAATTGAACAACcgtgtttcttttttgtttaagttGCTTTGTCTGTTG
TCTGGTTGTGCGCCTAATGTTTTTTTAGGTAGAGAATGTGATGTGCAGGA
GTTAAGTGTTCTTTTTGCTAAGTTTTTGAAGAAGTATggcaatctttttt
tttcagattttgttcTCCCAAGTGATTTTTTCCCAAAGTTGTCCCCTGCT
CAGGCAGTTGATGTTAAGTCTCTTCTCCGGTTGTCAATGGATGCCTTTCG
TAAGCTTAGAATTGTGTTGAAGAAGTGTCTTGGTTTTAACATCTTTCCAT
CTGAGGGTAAAATGCGAGACATGCAATCCCAACTTTTAACTTATTTAAAG
AAAGCTGATGTTAATGTCTCTACCCAGACACTAGTGAAAGTTGGTCAAGA
AAAAAAGCATGGGAACGTATATGTCCTCAGGTGTAGAGACCTTTCTGGGT
ATatggaaaatgttttaaagGAATATAAACTGAAAGCTGGGTTTGGACCA
GATGATGCTCAAAAGAGAGTTGATCTGCTTTTCTCTGGTGACAAGGGAGG
AGGGCTGGTTAAGTTTTATTTTGAGGTAATCTGTGGCCAATCAAAGCTTT
CTGTTTATGATGTCCATGTCTTCAGCATGTATGAAGGGTCTGATTGTTAT
GAGAATTTGCATACTGTTTTTGAACCTTTTCAGGCCGAAATTCGAAGGAT
TCAGGAAGATGATTTCAGGCTAGATGGGCATCCTGTGAAGGTGTTACTAG
GGGGAGACTTTCACTTTTTAGATGCAGTCCTTGGTCATCAAGGCTCATCT
GCTACTTTCCCCAGTAGTAAGTGGGATGTTAGTCTGAGTCATCTCAGAGA
GCATGGGTCACGCCCACACACACCGGAAAACTGTGTTGACATCCAATTTA
GAAATGTTGATGATGTAAATGCCAATTATAGTGCAAATCTGGCTTTAAAT
GGTCAAAGTTGTGAGTTGAGAAAGACTGGGAAGTtccattgttgtttttt
tggtcCAATGATTTTTCCGATTAAAACTCTTGAAAATGTTGTTCCGCCTG
TTTTGCACATTATGTTGGGAATAGTGTTGAAATTGTTCAATCTTTTATTA
GATCGTAGTCGTGACTTAGATAGCTCAAAAGTAGGTAGCCCAGCCCACAT
AGAGAATATGCGACAGAAAGAAAAGGCTGAGGAAGAGGCTCGCGTTACAA
TGGAAGCACTTGATAAAAAGAGACGTGAGTTGGGCAAAGAATTAGTTGAC
CTGTACAGTTGGAGAGAGCGTTTTGATGCGGTTCTTGCTGGCAACATTAA
GGAACTCCATTCTATTGCAAAAGCTTTTGATAATTCTTGCAGCACCAAGA
ATCCAAAGTTTGAGAAATGTACAGGAATCAAGTGCTTCCTTTCTTGTTAT
GATATTGATGTTTTTTGGGTTGCGTGTGACGTGTGTAAGTGTTGGAAACA
CTGTATGTGCGAGCTGATTCCATCTTCAGAACAAGCTTACTATTCCAATG
AAGTAGATTCTAAATACACTTGCTTGACCTGTAGAGGCAAAGATGTTGAT
GACATCAGTGATTTATTCAAAGATGTCATCAATAAAATTGTCTGCAGACA
GGAAAGCGCAGAGGCTTCATTTCAAAGGTCAAGTCATACCTTAGCTATGC
TTGAGGAAGAAACTGTCAAAACCATGGGTCCCATTGAAATTGACCTTCAT
CGGCGGCTAAATGAGATAAACGTTGATCGTCAAGCTTTCCATGGTGAGGT
CTTTGTCGGGAATCACTGCAAAATTGTACTTGCCAAACACAAGTACCTTT
GTGAGTGTCTCGATGGAGATAAAGTGGGGACACAGATTGAAGCAGTCCTT
GAAATCTTTGCTAAACTCGTTCctcttattttcaccaaaaaaGATCTTGA
TGAGGAAGAGATCACTGAATTAACAAATCTTTGTAATGAGTATGGTCGTG
TCTTTCCTAAAAGTTTTCCTGCCGAAAATCTCACAGTCAAAATGCATTCG
TTGATTTTTAGTGTGCCACGTTTCGTTTCTATTCATAAAACCATCGGCAG
GTATAGTGAAGAGGAAGGGGAAAGCTTACACAATCTGATTAACCAAGAAT
TGAGGCGTGTCTGTAGTATAAGGTGTAAACCTCTTAAGCTGAAACTGGTT
TTGGAAGGCGCAGCCTTACGTGCAAAGGCTGACAGAACTCTACTAAAGCC
TATTTCCCGGAAGTGTCAATCCTGTCATAAGGGTTTTTATTTGCAAGGGG
TTTGCCAATCATGTAATGCAAAAAGATAGTAAATTgtaatttgatcattt
tttcattttgtttcaggCTACTCCTTACGGAACATGTTGCTGTCAATGAA
TGTAAGATCTTTTAAACCACGTACAGTTGACATGgtgctattttcatcaa
ttcttgttatcgTACcaaaggtgatgcaggagatataaTGGAATATGATA
AAGCGATTGTGCAATAGCTATTTTTCTGTCATGGGACTCTGTTTAAAGGT
GAgattaatatttttgtttaaaacacgAGTACTTTGTATACAACACATGT
AACATACATATAACCAGATATAACATCAAAAGGCACAGAATGCGAAAGCA
CGTGGTAAGTACGTGGATATattttgacctttaaaaattttgatattttt
gacaacaacaagtttttttcaaacattttctttcgtACTTTACAGTAATt
atgtgaacatggtcttagagcTGACCTGTGTCAATGACCTGTGAACCtcc
gtttcgaactagccgtttGTGTAGTGATGTAATATCTTTTATCAGATTTT
CATTCTGATTCtataattgaattttttttgcattgctttcacttttcttt
accaaaatcttcaaattggAGAAAAATTAATGTTTGAAACTGTTCGACTT
TGAATgaactttaaaagaaaaatttaatgataacAACTCTtgtttttgaa
caattttcatGCTgaatccaaaatttcaaaccaatatAGCTAAAAGGTgt
caaaattaatattttcaaagaagattACTGAGCTAAAAACCCTCAATGAG
TCAAAGTTTCCAATTATTACGTtcaaaacaaatataaaattttcagcAGT
TTGTTAGGCAGTGTTGGAtattttggttgattttctattttttatcNAAA
CCCTCAATGAGTCAAAGTTTCCAATTATTACgttcaaaacaaatattttt
tatatatacttttatcAGACacgccatattttagaaaggcaaggcagcgt
ccgttggtggccaaaaagggcacttttccagtgtttttccactaaaaagg
ctctttttaccaatattttaatAGCTTCaagaggggcagcgtccgaCAAG
CGGACgcttaaagggcatgaaaaatggcctgtcAGATTTTCATTCTGATT
Ctataattgaatttttttttgcattgctttcacttttttttaccaaaatc
ttcaaattggAGAAAAATTAATGTTTGAAATTGTTTGACTTTGAATgaac
tttaaaagaaaaatttaatgataacAACGCTtgtttttgaacaattttca
tGCTgaatccaaaatttcaaaccaatatagctaaaaggtttcaaaattaa
tattttcaaagaagattACTGAGCTAAAAACCCTCAATGAGTCAAAGTTT
CCAATTATTACGTtcaaaacaaatataaaattttcagcAGTTTGTTAGGC
AGTGTTGGAtattttggttgattttctattttttatcgtttttactaTTA
TTTTCTAGTTTTTGCTATTCATTTGTTTGTTTACTCAAACATTAAAAAGA
CTCAAAGCACTAAAAACAACAGACAATATGAAAAAGCGTGTAAGAATATT
ACTAGTTGGTTAACCTGAGATAAATACATTTTGATAAGGATAACACTTGG
GAATAGTCACTTGGATTGTTATGTACTTCTATTTTGGAACAGTACAACAT
TATGTATTAAATTGGGAATAGTCACTTGGATTATTATGTACTTCTATTTT
GGAACGGTACAACATTATGTATTAAATCGGGAATAGTCACTTGGATTGTT
ATGTACTTCTATTTTGGAACGGTACAACATTATGTATTAAATTGGGAACA
GTCACTTGGATTGTTATGTACTTCTATTTTGGAACGGTACAACAATATGT
ATTAAATTGGGAATAGTCACTTGGATTGTTATGTACTTCTATTTTGGAAC
AGTACAACATTATGTATCAAATTGGGAATAGTCACTTGGATTGTTATGTA
CTTCTATTTTGGAACAGTACAACATTATGTATTAAATTGGGAATAGTCAC
TTGGATTGTTATGTACTTCTATTTTGGAACGGTACAACATTATATATTAA
ATTGGGAAAAGTCACTTGGATTGTTATGTACTTCAATTTTGGAAGGGTAC
AACATTATGTATTAAATTGGGAGAAGTCACTTGGATTGTTATGTACTTCT
ATTTTGGAACAGTACAACATTATGTATTAAATTGGGAAAAGTCACTTGGA
TTGTTATGTACTTCTATTTTGGAACGGTACAACATAATGTATTAAATTGG
GAATAGTCACTTGGATTGTTATGTACTTCTATTTTGGAATTATACAACAT
TATGTATTAAATTTGGAAGAGACTTGGATTGTTACGTACTTCTATTTTGG
AATTGTTACTGGTAATCTTGAATCAATAATCATATTGTCGTCACCTTCAg
tcttatttaaaaagaaacgaATGGCTTTGAACTTTTTCATCGAAACATCC
AACATTCGATACTGTTTTACACACTAGTAATTCAGTAATTATATCGTTAT
CGTTTCATGCGACCTTACCATGGGCTGTATTTGTTCATTGCAAGCATTGT
CATCGTTATTCGATTATATTCATCCATTTTCGTTATGGATTTGAGACGTA
CTTTTACAACACATTAAAATATCAATTTGTATCGATTGCGATTTTAACGA
CATCTAAGAATCCGCTGTGACTGCTTCCACGTACATTTCCCAGCTCAAAA
ATGTGGTTTGGTTATATGACTTTTATGGAAAcgaaaatacttgaaaatag
tTTTTATTATCTTGAAAGCCGGAAATTTGCCGGATatgaaaaaagccaaa
tttgcaCACATTAGTTGTAGTTTTGTACATTataatcattttttttgaaa
tagttATCGAAATTTTGGAATTACAAATTACGTATGTTTGgaaatatcat
ttttaatttcacaATACTGTATAAAGACTCGagtttctgatttttccaat
aTACCTAATAATACGTTTACTGATTTTCGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017341TCONS_00017341Clytia hemisphaericatranscript
TCONS_00017342TCONS_00017342Clytia hemisphaericatranscript
TCONS_00017343TCONS_00017343Clytia hemisphaericatranscript
TCONS_00017344TCONS_00017344Clytia hemisphaericatranscript
TCONS_00017345TCONS_00017345Clytia hemisphaericatranscript
TCONS_00017346TCONS_00017346Clytia hemisphaericatranscript
TCONS_00017347TCONS_00017347Clytia hemisphaericatranscript
TCONS_00017348TCONS_00017348Clytia hemisphaericatranscript
TCONS_00017349TCONS_00017349Clytia hemisphaericatranscript
TCONS_00017350TCONS_00017350Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017346-proteinTCONS_00017346-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:13971..20200 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5	9.89	10.3	7.87	37.34	20.54	26.49	26.49	17.27	10.84	22.99	21.16	27.1	31.66	21.91	26.53	17.58	19.2	24.31	16.03	61.81	59.16	24.25	25.93	8.84	34.56	23.53	24.98	14.13	13.44