XLOC_009752 (gene) - C. hemisphaerica

Overview
NameXLOC_009752
Unique NameXLOC_009752
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000267:113010..123261+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009752 ID=XLOC_009752|Name=XLOC_009752|organism=Clytia hemisphaerica|type=gene|length=10252bp|location=Sequence derived from alignment at sc0000267:113010..123261+ (Clytia hemisphaerica)
CAGCAGTGTAACGttcgaaattgaaaaaaatcaagcaCGTGTGAGTATTT
TCTGAATGCCTAatgactgttttttttgtttgtctagtcaaataaattta
aatttaaatttaatttgattaaGTGAAAATTCCTAAGAAGTTAAATCAtt
gatttcattgattttaattttaaactCTACACAACCAGATCGACCAAAAG
ATACAGCACACAAACATTTTTGGATTGGAAAATGAAATGGGCTGTTTAGA
CCCAGCCCAGGCAATGTCAATCGCATCGATTTCAATCGAATGATAGGTGT
TTGATTAGGGGGTCACTCACAAATCAATTTTAGGTTAGAAAAACGTCAAT
TGACGTTAGTGGGTGGATGGGTTATGGGTTAAAGGTTGTTGTCTTTTTTT
TTCAAATTCAGAAACATCGATTTTTCATTCCATGCCAAATATTACTTCTC
GCCCAAGGCTCGAAATAACGATTTCAAGTGGGTCTGACAAAATGTCCAAT
CAGGGTTGCTTTAGCTTGAAAACTATTATTTTTGGGCGGACATGAAGCTC
TTTGAGTCAGACAAGGACCCTGCTGACGCACCGGACTGTCCGGTGTATTT
GTCCGGTGGCAAAAAGTATCCTTTCGCTACACCGGACGTAATAAGTCCAG
TGTCAGTCCGGTGTTGCATACAGGGAATTTTGGACGTcagacatttatga
aacaaaaaattaagaaacaccggacgcaccggacttgtCATGTCCATCCC
ggtgtgttttgattgtccggtggaaaaaatatccttctccgaaaccggac
atccgacttccttaagtccggtgtagagattgtccggtggtaaaaaaaat
tctcattctacaccggactttcgcatGTCCGGTCGTTCGTTAAGTCTGGT
GCATCGGCAGGGTCCTGTcagacaatgtccgatgtccgaccgttatttca
agCACTGCTCGCCATGTTTCTGTTTGATCGCTTCGtctgttttgaaaacc
aaaacaaacgacgACCCGGTGTTTgtgtattttctttgtttgatggcCCG
AACTGCCCTtgaatttttacagaaaatcaagatggctgaTGAAACAGCAA
TGATGAAGgcagtttttcatcaattttcggggtattttcaagtatttgac
attttcagtgaagtcaagtttgaagatattctttattagaaaaacagtta
aaagcagtcaaaacgcaatttaccttacctcctgaatttgtctttgttat
gctataaaatataacaaacccttgtcatgctgtctaattacaaaaacctc
caatcactacttctccgccatcttgtttcactttaaatgccgtattttaa
aattttttaggcaattacttttttattttctggtttacggacattttgag
gaaaagttttgaacaggaggatggaaaaaaaataaaaataaaaatcccaT
CACACTTTTCTGGTATGCCTATTTTTATATCTACTCATGAATTTTATCAA
TCACATaaaggactttaaataaaaGCGATNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttctcaatgc
cccgtaactatgcccggggtacccgttgctaagaccttatgttaaaaaca
aaagcgattacggcaaaaagtagcgattttcgtaataccttaaatattga
tacttgactgtactgatTTTAGGGTGTGTGTGGGTGGCTCAGCTTTGAAA
ACGTCAATTCACGtttttctaacctaaaatcgatttgtgagtgacccctt
accaaatcaaaaagttcaattactgtagttcgattgatgtttgatgtGTT
CGATTTACAGTTTTCGTTCACAAATCATTCTTGGAGCGTATGAACAACTC
TTTTCTGCTAATACACCACCTTTCcagtaattcaaacttctcataaatgg
CCCAGGAAAATGTGCCCTCCatcgttgtgtataaaattgtttgagaGGTA
ACCAAACgtgtttttgcctgcgaggggtttagggaaagtgggttttcagc
ttctaacttttgatagcgatcttcttttggcaaaagattttcagggtggt
ataatatcatgaatagattgaacatactaaaatttgaggggattgtttga
cagaacttaagaaaagccaAACTTTCCCTaagccagacccgatcaatcaa
acttgtcgaaccaatcaaacaatcgaactaatcgaactccatggaacgat
taaagtttgatttaaaaaaataatcaaacctaatcgaacactcacaatct
ttgaagcaatagcagttcgattagttcagtCAGTAAAAacttcgattagt
tcgatgatattaaaaatCCTCATATCTCCcgcgcttgcaaaaacttttcc
tggcacgcgattgccatttcgacaaTTCCCGGACTTAACGCTCAATGTTT
ATTGTAtatacccggatatttgtctatccagaataaagtccgtagcccct
ctgttgcgattttgCGCGCACCaccgagtggcggaatactacgccccaac
aaaccgcctctggtGCTAAAAGGATATACAAGAAtagtgtgtaatccgtt
attgGAAGTAATTTCCTGATTTAtatacattccgaatttggctttgaaaa
gaagctaatatacggtggcagagcagcacaaacttgtcaaacaaaattgg
tttatcaaactgatcgaaccgaagcccattgatcgaaccgaaacccattg
atcgaacttaatcaaacactcacaatatcttttaaaaatcttagagtttg
attaatattttgaaattcgatGATTTGATTACAAAAAACAGTTCGATAGG
GCCTCCTTTTCTTCTTGACGAAAATTCGAAACTTTCCAAGAAACTAGaat
agtcttacctcttttatctttccctttacaacaatgcaatgctgacaagt
tgacacaacacattgacaagtaatccatgtgagagaagtttatattgaaa
tctgcaacaaaaacgaaagtggtctcttctactgattgcttcccggtgct
ccttcgcagctgtttatcaaatttccaccaggcattgtggtatagtggac
atcaaccttgattcctgtacaggtGACCAAGNttttgggttttcagaagt
acaatttccaacccacCCGGCAATTAGTTAATTgaacccccctccccccg
tttatttgccACCTAACAGTAAAGCGCAAAGTCACACAAGACCTAAAAGA
GCTAGAAAAGCTATATTATTATTAAAGTCCGGGGAAAATGATTTGTTGTC
AATCTTGGGGAATTACTTAAGTTTCATCACCTCCAATCTGGTCAAAACAA
ACCTCATCCTATTGTTAATGTATTATCAAATCATAATCATACCATCAgct
aaactcctatatcaggattagaaactaggatagtcttacctcttttatct
ttccctttacaacaatgcaatgctgacaagttgacacaacacattgacaa
gtaatccatgtgagagaagtttatattgaaatctgcaacaaaaacgaaag
tggtctcttctactgattgcttcccggtgctccttcgcagctgtttatca
aatttccaccaggcattgtggtatagtggacatcaaccttgattcctgta
caggtGACCAAGTTTCAATTCCCATTCcaaacggttcacttggcaagtga
acaaacctttgcccggatcaacccatgccatgtgaatttggtagtcagtt
caaggtgctgacgggatgcttactcaaagcatctatagttgtgAGAATGG
GCTTccagagcctcctgtaactcaaccataatagataGAGACCAATGAGA
TTGCCACATTTCACATGGAAGAAGggtctttttggcacccgtggtcTATC
AGTGCCTTGCATTACGGGCGGCtctaaaatcccacccttctatatttgtt
tcaatctgataaggcttaggttttttctcatcttcaatttaatAAAGAAA
GCAGGgatttgatgcaagagttagatgACAACAAAGTGCTGtatataaaa
aatcattgaataaaagaagaactttattaaatcttaaatattttcatttt
gaagaattggtgcaaaaaagtgaaacatggaaaaatttctttttttaacg
gTTCAATAgaaataggggatttggaaaactttctatatttgtttttttgc
acaaaccctgTAACTATGGGAGAGCATCccattgctaagatgttggctcg
AAATTGTAAGTCaaaccactgaaaatgaaagtaaaatcggcccgtactCC
ACTCCCGTAATCTTGTTATAGGAGTTTAAGCATAGACTgaccgtgaagtc
aggtaacatgcctcagtggagggaaacttgcatcagtggagggaaacttg
catggTTACCCGACTTAGCGGTAGGCATAATTCAATTCCAAATTGataat
aaattttgagatttcacGTCTGAAAACCATCCAGCAGTTTAGCTTGATCT
CCCCAATCTCTAGATTTTAAGTTAGCAAAATGAAGAAAGATTTAGTTTCC
TCAGAtattattttgagattttgagatATTTAAATTAGCGCTATTAAAAT
GCTTGAAATGAATAAgtaaataatattcaatatactatttgtatctttCA
GAAAATAAGTTACACTTAAAAAATGAGATATCTTGTCATTGTCTCTACCA
TATTTAGATCATTCTATTGTGTGGGGCAAAATAAACTGGAAACCTAGCAC
CCTTGCNACACCCCTCTACCATATTTAGATCATTCTATTGTGTGGGGCAA
AATAAACTGGAAACCTAGCACCCTTGCAAATTTGCAAACGACAAAATTTC
TAACTAATTTGGTTCTTTAGAAATGCCACTCTTTTAAAAAGGTGTGATGC
TCATTAAAGGGAAGGGCTCCTTTGAAGATCAGTgatcaaagttcttccgt
ctcagacggatttccgtctcacagaatttttttcaaagttttcggTCTCA
ATTATTtagcaagaaaaagtgatttTATTCTCTAGAGTAATTCCATCAGA
AAGAAATCTCGTATTAAAACTATGTTTATGGCTGTTNAAAGCAGGgattt
gatgcaagagttagatgACAACAAAGTGCTGtatataaaaaatcattgaa
taaaagaagaactttattaaatcttaaatattttcattttgaagaattgg
tgcaaaaaagtgaaacatggaaaaatttctttttttaacggTTCAATAga
aataggggatttggaaaactttctatatttgtttttttgcacaaaccctg
TAACTATGGGAGAGCATCccattgctaagatgttggctcgAAATTGTAAG
TCaaaccactgaaaatgaaagtaaaatcggccgtACTCCACTCCCGTAAT
CTTGTTATAGGAGTTTAAGCATAGACTgaccgtgaagtcaggtaacatgc
ctcagtggagggaaacttgcatcagtggagggaaacttgcatggTTACCC
GACTTAGCGGTAGGCATAATTCAATTCCAAATTGataataaattttgaga
tttcacGTCTGAAAACCATCCAGCAGTTTAGCTTGATCTCCCCAATCTCT
AGATTTTAAGTTAGCAAAATGAAGAAAGATTTAGTTTCCTCAGAtattat
tttgagattttgagatATTTAAATTAGCGCTATTAAAATGCTTGAAATGA
ATAAgtaaataatattcaatatactatttgtatctttCAGAAAATAAGTT
ACACTTAAAAAATGAGATATCTTGTCATTGTCACACCCCTCTACCATATT
TAGATCATTCTATTGTGTGGGGCAAAATAAACTGGAAACCTAGCACCCTT
GCAAATTTGCAAACGACAAAATTTCTAACTAATTTGGTTCTTTAGAAATG
CCACTCTTTTAAAAAGGTGTGATGCTCATTAAAGGGAAGGGCTCCTTTGA
AGATCTGTgatcaaagttcttccgtctcagacggatttccgtctcacaga
atttttttcaaagttttcggTCTCAATTATTtagcaagaaaaagtgattt
TATTCTCTAGAGTAATTCCATCAGAAAGAAATCTCGTATTAAAACTATGT
TTATGGCTGTTTATGGCTGATTTTATATTTTGAGTTGttttaattaacaa
attttTGTGCCTTTCTACTCAATCTTGTAAGTCATAATACATTTTTAAGA
CAATTAGCATTGAATTCTAAAAGTTATAGTCTTGGATGGCTTCTGGCTGA
ATTTCCATTAATATTTATACCTTTCATTATAGCTATGGGTGATGAGGcga
aattaaagaaattaaaacaaGCTTACTTAGACGACTTACATTCACATGCT
GGGAAATTGTGtctatctcataaaaagaaGTTTGCAAAATGCATGTCTGA
GTCTGTATTCAACTTTTGTGGTGTTCACTTGAGAGAATTTACAGTCTGTG
CGAGGAAGACTTTTGAAGAGctcaaagaagaaaataaagaaattcttGAG
TTCAAAATAGATCCCTCTGAAGAAGTGAAAAAGGTACAGTTTTCTACACT
TTATAATATTTTGAACTTTAAGTGACTAATCTTTTAATTCATTAATTAAT
GCATGGCTCCGActgggttctaggtccccccgccaaatttaggtctcccc
tgagaacaaggtcccccctgagaacaaggtccccccagcctgataaaatt
ttaggtcccagtataggggaaaaattttatggcattcacaaagctctatC
TACATGGGTgtgcacttttagagaatgcaagctcggtcgttacttgacct
cgggcaatatgtcttcattttttcattttaaggatcagatcaccctttgc
atgaaaacataaaggtttagagaaattaaaaaccaacattaaagaaaaat
atttaggaagtgtTATTTAGCCCCCAGAGTTACATAAACTAATGCAGGTC
CCCCCAAGATAGAGCTCCCCCCGTCTGTCGGGAAAAACAAGCAGCTCCCG
CCTCTTATATGGCAAATTTTAGGTGTAGGTCCCCCCGCTCAGGCAGGGGG
GGGGGCGAGCCATGTAATGTAGATAAGAAGTCTCCTTTTAGATGACAATG
ATGGGGGCAGACAATTGATAAGTCTTTCTGGGTTTTCTAGGACTAAGTTT
GCCCATCATCAAAGCAAAATGCTACGATTTAATCACATCAGATGTTTGAA
GCAATCCGTACAAATCAGTGGTTGGTATGCTGCTGTGAGAGCCTCAACTC
AGTGTGTAACAGATGCTGAAAAGATGATCCAAAAGGTCTTGGAAACCAAT
TCCAATCatccagaatggaaaaatattaCCAAAGATCGAAAACTTTTACC
AATGATTGCAAACAATCTTTCGAGTATGGGAAGGTTTGAAGAATTAGACC
AGCTGTTTGATAAAGTTGGTATTGATAGTTGCTCCCTTGGTATGCAAACC
ACATTGCTGAGGTCTTACATAGAGAGGCAGAATTGGGAAAGTGCCTTTGG
CTTATTAAAAGTAAGTATAATAAGATATTTTGTAAAgcaaatttaaaact
ttccaaATAAAAAGGTGAACCCTACTTCAGGTAGAGACTTTTATATATAA
ACATTTGATTCTGCCCTGTGCTTTCCTTTATCGACCTGTCATTACTGCGG
TATTGGTATTTGCGGCGttagcttttttaggcttatgcaaataaaggata
gaaatagaaatagaaaggtAAAAAACTTATCTATGATACTAACGTTCAAC
TTTTCTTATAGAATTTAGAGGGTAAATTGAAGCATACAAGGATTCATCAT
GAATTAGTTCAAAACCTTTGCATATACAGTGATGTTCAAAAGGTGTTCCA
TCATTTTGGAATGCTTGTTGATAAAGAATCTTGTTTCAAATTTAAGCGAA
GTCAAAACACTGCCCAAGAGACTTTTCAAGCAATTTTACAATTCCTTATG
GAAAATGAACATGCCATCTCTGAAAAAATGTTGACAAGTTTGATCCAGTT
TATGCATATTGCTGATATTTCTGTTGACTTGATAGCTCTGGAGAATTTAC
ACAAGTTATTTTTATCTTTGGAATATGAATGTAAGCTATCCAAAATTGAG
GAGCTGGAATTGTTAGACGAGATAAAAGAAAGTCATAGCAAAGATGAGAA
ATCTTTTGTAACAGAATTGAAAGTAGgtatagaaaaaaaacttattgaaa
atgGAGGGCATTCATTTCTCGAGAATTTAAAAGTAATGAAAAAAGAAGCT
TACATTATCGATGTTGCTAATGTTTTATACTACCAATCTGAAAAACAAAG
CGGACCTAATATTTTGAGATTAAAGAACATTGTCAGTAGTCTTGTATCTC
TAAATCAACACAAAAAACGCTCAAAAAGTGTGATATTTGTGGTGCCAAGA
GGTGGATCTGGAAGAAAACTTCATCTTGTAAATTATTTGCATCATCTGAA
ACAAGAATTTATAATGACTTGTAGTATAGATTTAATTTCAAACCAAAAGG
TTGACGATGATTTACTGATCATGTACTTAGCTCTTCAAAGCCCAAACAAA
TCTGTTGTCATTTCTAATGATAACTTTACAGAACACTTAGCACTTATATC
GGAATCAAAACGATCAGACATGATTACTTGGTTGAGATCAACAGTGAAGG
ACTTTTCTGGAAATGGAACAATCCAATTATCAAACTACATACCAAGTGTT
ATGGTTAATAACGGTAGATTATGTATTATTAGTGATAATAATGTTTTGTA
TATAAAAAAGTCATAGGTGATTTTAATAGTTTTATAAGATTCTAGTGATA
AACCATTTTACACAACAATATTTTAGAACACAGAGTAGACCTGTTTCATC
TTTTcatcttgaaattgaaaaattgaataaagcATCCATGAGAATAGATG
CAACAAACTGTCTTTTCTGGTTTTATTCTcgatatttcaaatttaaattc
ta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017411TCONS_00017411Clytia hemisphaericatranscript
TCONS_00017412TCONS_00017412Clytia hemisphaericatranscript
TCONS_00017413TCONS_00017413Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017413-proteinTCONS_00017413-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:113010..123261 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.68	32.47	12.3	9.62	16.22	10.03	11.66	12.03	8.93	7.6	8.23	6.28	7.32	5.8	6.63	6.76	13.39	13.57	5.23	6.97	18.05	15.15	30.01	28.22	7.42	11.77	16.89	11.09	17.06	17.56