XLOC_009833 (gene) - C. hemisphaerica

Overview
NameXLOC_009833
Unique NameXLOC_009833
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000271:30452..36627+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009833 ID=XLOC_009833|Name=XLOC_009833|organism=Clytia hemisphaerica|type=gene|length=6176bp|location=Sequence derived from alignment at sc0000271:30452..36627+ (Clytia hemisphaerica)
GAGCTGacttttttatcagattttatttATTCGCCAGCgtgaaattattt tgtttttcttaaatcagAAGAAAATAATAAGAATGAATCTTGTAATATAT AATGAACAAAACTGATCACCAAAAACATGATAATGAAGAAGAAATGACAC CTAAAGAAGTCCCTAATCAaacagccaatcagattgcaagTTCTCAACAA CCAACCAATCATATTGAAGCTTCAAACAATGGTCATGACATTGATGTCAT GGTAACAAATGTGATTAAAGATGGTGGACAAGGGAACGGTCACAATATTT TGAAGAATACATCACCTGAGAAGACAACTATCTCGTCGTCAACGAGTgac gaaaatattttcagcagaATCGAAGTGGAAACAAGATCAGATCTCATTCA ACAGGTATTTGTTTGAACAGCATTGTTCTTAATACGGTCTCTTGTGCAGG TCATGAACACgcgacaatttcatgatttgtCCAAACTTAAAAGTGTCGCT TACATTACATTattcatagatttataaagcccgaagggctagatggcgta cttttgctgaaaagtgtgccgtggttaggtaggaaatcctgtctaaatca cgtgacattacaatagaatttcagcgcttgaccaatcagaagcttcgcgg gttttcgaaaacaatagctacaatatattttccgatattcacttcttTCT GTCTGTGATTGCTTAAAGCATGACATCTAGTCCTCTTCAGGCTTTATATC TATGGTTATATTCCCCAAGGTCTCTTTGAAACTTGGTGAACGTGTAAGTA AAGGTACATTCCACTCGTAGGTGCCCAGGACATCTCTGGTGGTCTATTTT ATAGTGACTTGGCAGAAGAATAATTCCAACTTCAAATTGAGATAAGGATC TACAGGTTGTTCATAGAAAAACTTACCTTCATTGTCTTTcaaaccatagt cattataaaaaaccctggtctggtaATGTATTGTTTTGGCTTTATTGTTC AACTTTCTTTTGTTGTAAATAAAaggcaagttgcgatttgcatacttttt tatCACGTTACCATAATcccctcttgggattggttagTTTTAtaaatcac atgatcaaaaactatgcaaaacaaatcaatttaAGGTACGCAAGCTCTAA CGGTTgataatacagggtgtccctaataaaagtatcgagtttgaacatgc gattgagtaaaaaagtttgtgtgtgttatcgctaaaatataataacgttc tccatcacataggctcattacaaaaggtagttacaacNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagagggagagcttaaaatac aattttgtgaatacacacttaaaactttctactcaatcgcatgttcaaac tcgatacttttattagggacaccctgtagaaagAAACTGAAGGAGAAGCC TTCCATACCGgggtttttataatgactatgttCAAACATCAAGTCAATTT CGACTCCAATCATGGCTTCTAAGCTATAAATAACCTTATGTTTTATAATC TGTATCTTTCGCAAAAAGAGAAATATTCATCCTCCAAGTACTAGTGAATG CTCGAAAACAACCTCCCTCAAAAAGTcattcatttttaatttcagaCAGT CAAGCAAATAGTGCAAGAGAGAATGGAGAAACtggaaaataatttatttg aaGGTTTCAAGAAAGAGCTGAAGAGAATCAATGAAGAAAATGTGAATCTG AAGAGGAGGGAACGGACATTAAAAGGGCGAATCCAACTTCTTGAAAGTAA CCTAAAAGTATGAcaatctttttgtctttttgtcttTCATTTAAAAACTG AGTTTATTAAAAATCCATACAGGGgagtggacgaaccttttcaaatccga aaaaaattcttgaaaatatttttatactcCCTGGAAAATGGCGAAATTTG TAAAGAAAACGTTGGAAATTTCTTTTCGTAGCTTAAACGTGACGGTGGac aaactaaaatcagtctaaaaaatggaatggcccaattaaCAGACAAAGGA AATGAAATTATAACAAATTTCTCTATTCCCTTCTTCAGGTGTCAACTGAC AAATCCACCAACACCGAAGAATGCTCGTTaattcagaaaatgaaaattgg aGATGAAAAAGCTCCTACAAATGAGCAAAAAGAGAGTGAAAACGAGGGCG ATGAGATTTCAATTTCTCCTCGAACTCGTATCGACCTTGCTGAAGATAAA ATTCTACCTCTAACTTGTTCACCAAATTCTTCTAGCTCTTTGCGTGACGA AAACGATATCACACCTCTGGCGCCCTCTGACGATAATTCGACCGTTATTG AAGTGGTAGAGACGTCACTGAGCCGTGAAGAAACAAAAATAGAACTTGAG AACAGTGATGAATTGGTTATAGATGAGAAAATAGATATACCGGTTAAGGA CAGTTCAACTGAAGAAAGTTGCGTAGAAAAGACTTTGTCTATAAGCGATA AACCAATGACAATCGAACGTTTTGATAAAGGAACAACTActaaagaaaat aaaggaaCTTTCATAGAGGTTGGTGATTTGAAGCATAGAGATGAAGAACT GGTCAATCAAAACGGTGCATTTTTTCGATCAGCTGATCAGAAAGATGATA GATTAACACCTAGAGACCATGATATCGCATTAGCTAAACCAACCAATCAA GGTATTGCTTCAAATGAATCGACCAATGAGATTGAGGATATGTTATCACC TCGAATTTCTACATCAACATCATCCATCACTGCATCTGTGGAGACTGCGA ATAATAATTTTGTGCCGGCAATGTTTCGATCATTGCCAACAATGGAGGTT AAACCATACCAACTAACAACAGAACCTGAAAGGAAAGTCGAccaaattgt cgaaaaatacAAAGAGAGAAACTTAACAGCCGATAGGAATCCACCAGTTT TAGAGCCATCCAATCACAATCGTTCTTATGCAGAAGCATCCAATCAAAAT CATGCTTTTATTGAACCAGTCAGTCAATACCAACCTTTGACCAGAGCTGT CAATCAGCAACCACCTTTCTCCATTACTTCCATAAACCCGAATGTTTCCA TGGACAATACACCGAGATACAGAATGAGAGGTCCCTCAAAGCGAGCCGCC AATTCAGAAGTATTCCCTGAATTTCAACAANTGTAAAGAAAACGTTGGAA ATTTCTTTTCGTAGCTTAAACGTGACGGTGGacaaactaaaatcagtcta aaaaatggaatggcccaattaaCAGACAAAGGAAATGAAATTATAACAAA TTTCTCTATTCCCTTCTTCAGGTGTCAACTGACAAATCCACCAACACCGA AGAATGCTCGTTaattcagaaaatgaaaattggaGATGAAAAAGCTCCTA CAAATGAGCAAAAAGAGAGTGAAAACGAGGGCGATGAGATTTCAATTTCT CCTCGAACTCGTATCGACCTTGCTGAAGATAAAATTCTACCTCTAACTTG TTCACCAAATTCTTCTAGCTCTTTGCGTGACGAAAACGATATCACACCTC TGGCGCCCTCTGACGATAATTCGACCGTTATTGAAGTGGTAGAGACGTCA CTGAGCCGTGAAGAAACAAAAATAGAACTTGAGAACAGTGATGAATTGGT TATAGATGAGAAAATAAATATAACGGTTAAGGACAGTTCAACTGAAGAAA GTTGCGTTGAAAAGACTTTGTCTATAAGCGATAAACCAATGACAATCGAA CGTTTTGATAAAGGAACAACTActaaagaaaataaaggaaCTTTCATAGA GGTTGGTGATTTGAAGCATAGAGATGAAGAACTGGTCAATCAAAACGGTG CATTTTTTCGATCAGCTGATCAGAAAGATGATAGATTAACACCTAGAGAC CATGATATCGCATTAGCTAAACCAACCAATCAAGGTATTGCTTCAAATGA ATCGACCAATGAGATTGAGGATATGTTATCACCTCGAATTTCTACATCAA CATCATCCATCACTGCATCTGTGGAGACTGCGAATAATAATTTTGTGCCG GCAATGTTTCGATCATTGCCAACAATGGAGGTTAAACCATACCAACTAAC AACAGAACCTGAAAGGAAAGTCGAccaaattgtcgaaaaatacAAAGAGA GAAACTTAACAGCCGATAGGAATCCACCAGTTTTAGAGCCATCCAATCAC AATCGTTCTTATGCAGAAGCATCCAATCAAAATCATGCTTTTATTGAACC AGTCAGTCAATACCAACCTTTGACCAGAGCTGTCAATCAGCAACCACCTT TCTCCATTACTTCCATAAACCCGAATGTTTCCATGGACAATACACCGAGA TACAGAATGAGAGGTCCCTCAAAGCGAGCCGCCAATTCAGAAGTATTCCC TGAATTTCAACATAAACGTAAACCACGTGTTGGTCGCCCACCTTTGAATC GTGGTCCACGGCCCCGGCACGTCGTTCGGCCGCACGAGTACCAACCGCCG TGGTATAATCGAGTGCCAGCAACTGCAGCTCAGCATCAACGTTTCTTCGA AGAAATGCGAATAAGGCACGCTTTTGAACTTCAACAATCACCTCAATTTA AAAGGCTGTCTTCTAAACAAAAAGCGAAAGCTTACGAAGAAATGGCACTG GCTAGTATGAAGTGGGAACAAGAATTTTTAAAGCAACAAGAACATTTACA ACGACTTGAAATGCATCGTTCACCAAATGGTGCAGCTAATGCCAGATTCA ACTTCGATCCTGGTTACATGCAACAAGGCGCACCAGTGGAATATTTGCAC CCATACCGCAATGGAAATCCACGATACCCATCGGAGGAAGTTTTGATTTC CCCACGAAGGAAAAATCCCCATGCTCGATTCCCACCTGAGGAAAGTTCAG TTTCACCAGCAAACACAAACACTATTCGCCAAAGTCTTAGGATTCCCGAG GAGGAATTATTAGCTCCTCAAggacaaaaacaacaaaatgggaATCCAAG AATTCCACCCGAGAGAATTTTAGTTTCCCCAGGGGAGAGGACTCGCTTGA TACAATCTTCTCCGAAATCTCCTTCTCTCCGTCAGCAATTGTCACCGAGG CAGTCTGAGCAAAGGAGACAAGACAcaaacaataacaaacttttACAGAC CACACCAGATACACCTATTGTTATACATTCACCAACACCAAAACAAGAGA CATACACTACGCCTCAAACACGCCCTCAGGAAAAATCACTACACTCCGAA CGCCCGTTATCACCAAAAACGAAATCAAGGAAACTCCCCATACCAGTCCC TCCACCTTTGACACTACATGAAGTCACAGAAGGACATCTTTTGACGCCTG TACATGATCGTAGAATGTCTGCTGATCCTAATATGAAAGCACAGCAACAG AACTTTAAATTAGTACCTGTATCTTCAAGCAAGAAAAATCCGGCACAAAT CATTCGCTATCAACAAAAGAGTCAGGATAATCGATTACCAACTAACGATG ATTTAAGAAACAATAAAGCTCTGTCGAGATCAGATTATGATTTCCCAGCG AGCCAGGACGTTTCCCGATTGCAACCCGTTTCTGTTTCGAAAATTCCGAT TCCTTGTTTACTTGATATCGATGGGCGTCCACCACCGACATACGAAGAGA CACAGCGAGCGCGCTTACCGAATATTTTGACCGAATTAACAACAGATGTA GAATCAGGCGCGNGAAGAGACACAGCGAGCGCGCTTACCGAATATTTTGA CCGAATTAACGACGGATGTAGAATCAGGGGCAGTAGTTTTGAAATGGAAT TGCACTGAACTTTCACAAAATTGTCAAGATAACGTACGCGTATATTTATT GTTTGCTTACCATTCAGATAACATTTACGCCCAGCCGCCCTCTGATATAG GGCGTTGGATGCGAATCGGTGAAGTTGATGCTCTTCCACTTCCAATAGCT TGTTCACTTACAAAGACTTTTGATGgcaattgttatttttttaccGTTGT ACCTGTGGATAAAAAGGGTGTTTTAGGGACGATGAGTAATTTATGCGTTT TAGATGTTTCTAGGTAGTATTTGTCAGTTTTTTTATGACAAACTTTTGAT ATGGTTGAGttgaagtcaatttcttttggattAAATAAATTATACATTAT ACACCACTTTCCAAAAACCAATTATC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00017577TCONS_00017577Clytia hemisphaericatranscript
TCONS_00017578TCONS_00017578Clytia hemisphaericatranscript
TCONS_00017579TCONS_00017579Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00017578-proteinTCONS_00017578-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:30452..36627 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3 0.21 0.55 1.93 2.57 2.42 17.05 18.31 6.51 9.21 7.83 5.45 21.62 22.66 7.12 12.33 11.28 14.02 16.35 16.96 11.1 9.99 3.73 4.8 8.07 7.32 2.87 1.96 1.59 0.71