XLOC_012184 (gene) - C. hemisphaerica

Overview
NameXLOC_012184
Unique NameXLOC_012184
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000393:261706..271221+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012184 ID=XLOC_012184|Name=XLOC_012184|organism=Clytia hemisphaerica|type=gene|length=9516bp|location=Sequence derived from alignment at sc0000393:261706..271221+ (Clytia hemisphaerica)
caaaaaattgattttgtatcggaaatccaggagtttcaattgcttttgta
ttggaaatccaggaatttcaaaaaaacattttgcctcGGAATTCCGCTGT
CGTCCNACAACACGAGCTCGAAAATTTTGATCTCTGCATCTTCAGAATCT
ACAAGCAAAGAAAAGGAAACTGCTGCTTGTGATACAAATGTCAACGCCAC
AAAGCTTACTTTAAGAGCTGTGAAGTCTGGTGATACATCTGCGTGGACAC
CGATTGCTGTCAGTGAAGAAATCTCCCCAGAGGAACAGTCGGTAAAAATT
TATTGTTTATGTTTTGagtttttcacaaaattcttttgtcatACTTTGTA
ATTCTCAAACTACCACATTAtagttaccgtcaactgctctaacttgtgac
tatctgacaaaacatggtatggcaattcggccaccatttcattGAACAgt
ctccaaagtcatttgatttgatttggtgtgaaggcttcttcataaaaaag
acgaaagacatgtatctatttttcggatccggtatgcgggaatagtgtca
ggacctgcaggcgaccaagtagggttgggtatgggtgtggtttaggtgtg
gttacgtatcagattggctaggaattggcagtgcagctggaacctcgata
ttcatTCCANTTCAATACACAagtccacacatattttttttctcaagaat
tattttgagcaggaaaaaattataattgcaatattgacacttttcttttg
tttggagttagtgcacaaaggtttctagacgactaaaattgttccactca
atactttttgctttatttctactagtcgtctagcttgctagactacattA
ATTGGTGACTGGGAATAAGGTGAATGTCGTGTGGTTGCTTTGGTCTTAGC
CTTTCTTCacatgtttctactttttggactgatgaaatttgtaagtgaGA
CTNCTGttaggggccgtcgacaaacgactttccttttttttaacggcctg
aggccgttaaggttcagaccccctccccccctacGTCTTAGCGGCCAAGA
AAATTCTGCAAAAGTAAATACTTTCACTGGTCCATGGCCGCCATGTTCTT
TCGATTCGTAATcctcaaagttcttcttttcgcaTGGAaaaaacatgtgg
ttttgagccgtgacctttcaattttgaaactccaaGCCCCGCAGCAAGTC
AGGgcgggatgggtggagcaaggaGTCAACTGAGGTGGAGGGAAAAATTG
CCAACTTTCGTCACGTGACCAGTCATTTTTCTCGTCGCAGCATTAattgt
agactggagtcgtttataatgcgtgtaatactaataataccaataccaat
actaataataataatacgggatttagtttgtataaacgactggaagaatc
tggtgttccagccttatagatacaggggctagctacgcagaaacttgcNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgatattctttga
aggaaaaatgtcagaaacaaacccaaagaccaaaagatgtattttgttgt
tgagaatcgatcctgtgaaaataaaaaaatttctgctatgggTTTTTTCG
GAATGCTAAAAAACTCGATTTTCGATCTTCcgtaaggtaaagaggttgca
agatttgggttagcgaggcaaaaatcgctaaaaagctggtaaaatcgtaa
tcctcaaaaatcgaagttccagcttcactgattgggttattatcagttag
ggttagggttggagctcgaaacaagcactattttgtgattttctcttaat
acagtctggtctgcagtttgtacaatataaatagccgttaGAAGCGCTAT
CCTGGCATGAATCTGTGGCGTAGTGGATAAGGcaatgggtttcaaaacat
cggaactttgtagtgggttcgaatcccaccggtggcgatctgtcggtaag
tcaatcggtaagttagaaaacatagaaaataactaacaaagaaccagaaa
gtcagaaaaactacgaacaagagactggaaagtacgaaataagtccagat
ctgtctttcgtctttgtgaagaagccacAAACANgactggaaagtacgaa
ataagtccagatctgtctttcgtctttgtgaagaagccacgaccatTTGA
TTTCAGGAACGGTGTAGTAGGCgacaatctaaaatatgttctgttcgcgT
CATAAAACATCTgcaaatccagtcggtcggtcggtcggtagtaaattttg
tcaagttttttaaatctagtaaaTCACAAAGAATCAAGCGGCAATTAACA
AAATCTattgccgccatctttgatttgccAAATTAGATGTGCGCGCGCAT
GTGTGAACCTTAAAAGCAGACCTTATTTTCGGCTCTCGgggtattggccc
taccgcgTCTCTGAATttcgacttgaaaatttcaataagggtacatgaaa
aaaaCTCAGAcaggactcaatgtgggttaagtaaacaaaaactcgTAGCA
AATGATGATTCAAAGAAGTGCTTagctatcaaaaactttttccgacaTTT
TTCCGACTTTTCCGACTTGGGATTAatgttttgaaggtgagtcggtcgga
cgacgcgaacggaacatattttagcTTGCCGcctattaaaaaatacatga
tttctctttcaattttacagtaagtgcaggtaagtgaaaatacagaccag
atatgcaacagtcccatttttcgaccaattgtcccaagttagagcagttg
atggtaggAGACTTATTTCATAATCTTAGCATCTTTTAAGACACAATAGA
CTTTTTcacatttcattttcatcacaTGACCCTTGACGGACGGGTGTTTA
ACGAGAATGGAAATGCAGTCCAGCCAGCTTTCTGTGTGATTTTGAGCTCg
atattttgtaaataaattgCCGTATGGAacaagaaaaaattaagttaaag
CTGTAATAAGTTTACTGTTTACTGTTTTCCGGAGAGcagcttaaaaaaaa
agaactatttTTCGCTCTGGAAAGTTTCAGAGCTCTTCCGGTGCTTTCAG
AGCCAGTGATTTTTAGCACGTTCTAAAAACCATTTAAACATAGTTacaca
aaaatatttgtccccAGGTAATGGACTTTGGTCAAATAAAATACTTACAG
TCTTGATGGATTGATGTTTTTGGCTCATTTGTGTTGTTAAATGGTGAGTT
TATGAACACAAAAATACAAGTGTGTGCCCAGCTGAAATGTGAATTGAATG
TGAATTCTATGAACAATACATTAGAAAAACTTTTGGATATTTGAGTTCCC
CTAACATTGTAGAAtacataccgtgagtggtcctaaatccgacagccctg
cttaaatccgacccccaaataactgctatgaaaacttttttatgtttaca
aacattccctctccaagttgaacaataaactattgcaagaactctcgaaa
caaaacatctaacaagatgactaaaatgtcaagatgtcaattaatgtgat
caaaaacgtgtgaattgtaaaaaaaaattacctctattattgattattct
gaatccgttgcttgtgtttaaaatgttaacaattttgtaataaaaaatta
tattttgtatataagtaagaagcaattattgttatttggttcaattggtt
cagtgtatcaattctctcagtttagttgaatctgtggtatcttcattgcg
tcacagaaAAAGAGTGaattaaaacctttaaatcaacCAAATTCTTTCCG
CCATTATCCATATAGTCATTTGGGAGAATGCGACAGTCTTTTGAATTAAT
AATACCCCATATTTCCCCtactatctatctatctatatatttaagtagtA
ACAAAACATACATGTTCGTTCTCCCTATATATAAAAACattgaacaaaaa
aatataaatgaaaatgagtaaaaataaaatgtttggttctttattcaaaa
ataatttataatataaaattccTAAAGAAAAAGCTCATATCGAACCGAGG
ATAAGTAGTAAAGTTGAGAATTAAAGGCTGAGAATATTGACACAAAGCTT
AACATAATGGCTTGGTGCTGAGAATACCAAAATGTGAAGGCAGGGCGGTA
TTGAAAACTAGGAGTTGAAATTAAGTTGAATCCTCAAACTGAAAATGTAA
ATTGGCGTGATGAGAagttcaagtcaaaaaaataaatactaaaTGAGTTA
AGATAAGATAGATTAGATAAATAGctataaacatttaaaatatttttatg
gttTCAGAGAGAAAGGTTTCAAGATGAGTGATGTAAGAAAGAGTAAGGTG
AACAAAGgcaaagaatttaaaattagtGAGAATAAAAACATGGGTGAAGG
CTAACCTAAACTTGCAACAAAATAGGAAGTTTCATTAGcttcatgcaaaa
taaaaaggtaagataaattaaataaataaaaatatatgtaaATAAATCAC
TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGGGCCAAGGCAACCTGGT
GTTAGTGATTAAGAAAACACAAGAGGCTGATACACAagggaaaaaaaaat
aataataccaTATGATCTAGTTTCTGTCAAAATAAGacgaaatttcgatt
ttaaattcatttctattttcaatattcaataCTTCTTTTGGCAACTCATT
CCACCATTTAACAGTTATActactgaaccaaatttaaagtaacaaatcaa
aatttaagtacCTTCCTCTTTCTTATTGTATTAAAATTCAAGTTCATATC
TTGATCCTGATGGTATTGTGTTTTTTGGACCACCAGGTATAAAGAAATCT
TGAAAggtcattttgtcatttttttgtcattctgGTCAGCTGAATGATTG
ACACATTTTTGCCTATTTGACCGGGTGTTTTTGTAAGATAAGATGCTGAA
GTTTTATTAAATTATGCCAAACACAACTGTCCTAAGTTTTCCCAGATTTA
CATATTGCAGAAATTGTTGACACCAGACAAGTGTGATTTTTAAATGATTC
AGGTTCAATGTTTGGATTGTCTGGTTGTAAAAAGCAGTTGGGCACATTCT
TACGATTGAATGTGGTGTGTACCGTGAGATcggataacttgcatcagtag
aggctaatatgcatagccctcaaatgaatgacctggctggtcattaaaat
acaaaattaaatcaaacaaaaatggtagagtagagctgtgagcggagctg
caaagttcatttgttttgaaattttgctgctttgatggGTCAGTCGTTTG
AGGGCTATGcgtgtttgcctccactgatgcaagttacccgatctcacggt
acacACCACAAtgtgaacaaaaaaattgtatCATACCATcgtatttatat
ttatattgataggtcgatttttgacgtttttgaccactttctgaaagtaa
ataTTTCATTCTTTTGATCATCACTTTAAAGATCCAGTGGTCAAAATAAG
GTTTTTATCCTGTTCGGTTATTTTAGTGAATCAGTCATGTTTAGTGTCAC
CCGAAGCCCGACCTGATGGGCAGAAAATTTGTCCCTTCTAGATGCATGGC
TTTAAAACCCTTTTTTTTTCACGTCCATTAGTTTTTCTAAATGGACTTGG
AACAAAGAATGGCATCGAGTGCTTTTCAAAGCTTtttaaattatcaaaac
aaatatatACAAATCTCTCGACTTGAAATGCGGCgccaatgtttaaaaat
tgactttaatgttttttcttacatttcttttgcatcgaacgttttaattg
cattcgaaatttattttgtgagaaagaaaatcaataaacaacaataaaag
aaagacataNNNNNNNNNNNNNNNNNNNNNNNNNNagagaagagaaaaat
ataaaactctcagtgtaatttctgtaatttactttcctaactgggaaaaa
gtagtgaaagccattgtgcgattagctcgtaatcacatacacgttttttt
tctttaaccctattcgtactaggggggggggctctttctgttcggaagtc
aaactattggtaatagctcctgaaataatagagcttttgccgtgaaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttaa
gaaacacacttttaagaaacatgaggctcaaaatgcctaaaaactaagaa
acatctaagaaacatgctgaggctgagaatgaaaaaatagcattttttcc
aatcaaggttccagaaatatacatacataacagttagaaacacttgagaa
agtcagaaaatcaatataaaagataggaaagtaccgtagattagtctatt
agactattgtattatcgacatgcgtcctttaagcttgacaaagtttagaa
acatgtaagaaacatttaaggctcaaaaggccaatttcttaagaaacatc
gaGGCTGCTGATTTTTTCGTTTctaattaataaaaaaaaatcactcgtgc
aattatattcgaattgcactcgttatcatgtgattacatatacttatGCT
TATGAAAAATTCCAGAAAATTCATGTATTTAACAAATTGCAAAAATTCTT
CGTCGCTGTTTTTTCAATGGCGACACGAGAACCTATTTTTTTAGCTTAGG
AAACACACAATAGAAACTCGACTGCTTAAATTTGAACCTACTTAAAGTCA
TCATACATTCTTGGGCCATGCCATTTTATATTCATACAGGAGGCGGACCA
ACATAAGAACGATTTTAGTTCACCTAGCCTCCACCCTCACTTTATggtat
taataatttttttcaaatttttgccattttccagggggtatactCATATT
TCTAAGAACctttttttgccttgaaaaggttcgtctatcccccctgtatg
gaaatttaacgGAACAGCCTATTCCATTTTTTAGGAAAAGCTGAAACGGG
AAATGCAACAATTGGTGTTCTACAACCCTGGGCCGTCTACTCAAGACTTA
CTTGGTTTCAAACCTGAATTCAGTAACCGTGAAAAGCGAAAGTTGAACCG
TCTTCTTGAAGACAAGAATGGTGGAAGTTCAGGGTATGTTTTATATTATT
CATTTTATAAGTTTACATTAATTTTAAGGCGTAcctatacagtgtgtccc
aaaaaaaagcgAACACATTTAtacaaagtaaaatcctcaaaactcattaT
CTGAACTGGGcttagaataattgattgaAGATATAACAATTCTCTGTTCA
AATTTTAAGCCCAGTTTAGATAATGAGTTATGAGTaatttactttatata
aaaatttgtccgtTTTTTGGGACAATTTTCTACGGATTAGTTCGTAGATT
TGAAGTGATCTGAACAATGACATCATATAATGATATTAAAAAACTCCGGA
TATTTTGAAATGGTCAGGGTAATATTTTGGTGAAATGGGTTTGAAGTCTG
AACAAATAGCCTGTTGAAAAAGGGTTTTATCATTAATTTTGTTCACACCA
AACGTACTGTGGCTAATTTTTCTGGaccatatttttttaattctgcCATA
GAAAGACGAATAACTGTGATAGAGTAATGTTCTATTAAGTGCAATATACg
agcaatagacgatatcggctttacatgaaaactcagatttgatccccgag
aattccccacaatgctttgcgcggaaaaaagttcacggtaaaattttttc
cgcacaaagcattgtggggaattctcggggatcaaatctgagttttcatg
taaatccgatatcgtctattattaTCCGTGTGAGAGGGCGATACTCGATA
TAAATAAAATGACCCAATcgatttgtaaaaattttgcaaatcaaaGTGAC
GATAAACTCGAGATATAATCTATATACTATCTCTCAAATTCGGGATTTTG
GCTTCGGTCAATATTTTACCATATTGCCCTCTTAAACAGTCAATAGGGTT
ATTAATAAATGTAGAAGTAAATAAAGAATAATTTAATAATAACACACAGG
GACGAAGCACCGAAACGGTCTGGACGTAAACCTGCGAAGCAAGTCATAAC
ACTACACGATGAAAAAGGTTGTGTTCGTGAAACCGGCGAGGACGTTTGTG
ATTGTATGATCACTGACTGTCCGGGTTGTCACTTCCCGTGCGGCAAGTGT
GATTCGGAGAAGTGTGGCTCTGTTTGCAGGAATAGTCGGCGATGGACGTA
CGATGTTGTGTATTATAATATCAAATGATCTCTAATATGGATGGATAGGT
GAGACTTAGATTTGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021716TCONS_00021716Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00021716-proteinTCONS_00021716-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:261706..271221 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.91	2.58	4.47	2.27	11.87	7.95	7.69	8.45	9.01	7.94	7.85	7.7	5.34	6.36	6.55	5.89	7.72	8.74	3.62	3.49	5.45	4.43	10.26	8.89	6.58	7.24	2.42	1.98	8.03	8.09