XLOC_013244 (gene) - C. hemisphaerica

Overview
NameXLOC_013244
Unique NameXLOC_013244
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000456:189875..197217+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013244 ID=XLOC_013244|Name=XLOC_013244|organism=Clytia hemisphaerica|type=gene|length=7343bp|location=Sequence derived from alignment at sc0000456:189875..197217+ (Clytia hemisphaerica)
GTTCACTCTTGGAGAGGTATAAAAGTGGTACCAAGAGTTCTTAGAGCTCA
CTGAATGCGTCGAAGTCTTCTACTCCATAGAATTCAAAGTAAGTATCTCA
CTTGATCAGTACCCAGTGGTGACCAGTGGTTCTTAAAGTTTTGCAATTAT
AAAATCTCGAATCATAGGTCATTTGAAAATTTTCTGAGCAGCTATCTATA
ATGTAATTATCTAATTTTGAAAGTGTTCAACTTAAAGATATAATTCTCTC
TCTTTTAGATGAAACTCATTGGATTTATCTTTTTGGCCTTGTTAGGCCTC
ACTTATGCCGCCCCACAATACCAAGATGGGCAACTCCACATCCCCGATAA
ATGTTCTGATGTCCTTGCTGTCAAAGTTTGTGATAACCTTGAAGCCATTG
CCAAGAGATTAAAATTGAAAGCCGAAGATGTTACCAAAGCTGTTGTCGAT
GCTGTCAAGAAAGGAAAGACCAGCAGTGTTGAGATTTACAATGCTGCCAA
GGATTTCTTGATCAATGAAGTTGCCACAAAGAAATGTGAAGACTTCACTA
CTGTTGAGGTACAGTGACATTGTCCTAAATATCCCTATTCTAAAATCTTT
GCTCTAGCTCATTCTTCCAACTTAAATATCTATCATTTGTGTTACATAAA
TCTTTGTTAAAGAAATCTTTTGAAAAATCTTAAAGATTTATAATTCTTTC
GTCATTTTCAGAACTGCCAAAAACTCAGAAAGGTCGCTGCTTTCATGAAA
TTGAATGCCGAAAAAGTTGAGGAATTTGTCCGTAAGGCTGTTGCCGAAGG
GGCCGTCCAAGCCGCCGACATCTATGCCAAGGCTATGGAATACTACAAGA
ATGAAATCAAAACCAAGAAATGCGAAGATTTATTATCTGTCAGTGTAAGT
CACTCAAAATTTGTTTCCTATTGCTTTATAAGTTCGCCTACTTGGacaag
ccgtatatgtataaaagttgcgaagcgatccagagcctccttaattcgca
agttgcaagcaaaacatttatGCCATACAAACACTGTATATTTAACGGCA
TTTGTGCAGTCTTTCCGAATATCCTATCATTCGCAAATTTCTCTATAAGT
ATAAAAATGACATCTGTAGATTATCTTTCACTGATGAAAAGTGAAGCTTC
AACCgtcctatttttcattttctataataattagcaaaaagtttaaagaa
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNACTTCAATAACAGTTAATAAACACAATGTTTCAATATTTCCCA
ACAAATTGAATTATATTTCTTGACACACCTgtctttcgttttctcaaata
agaaattttcacgaaaaaaacaattaaaattgaaaaatacagtAATGCAA
ATCTTGACAAATGAAACATCAATATATTTGTTCATTATCTGAAACATTTC
AAAACATATCGACCTCCTAAATCAATATTGGTTCACTCTTGGAGAGGTAT
AAAAGTGGTACCAAGAGTTCTTAGAGCTCACTGAATGTGTCGAAGTCTTC
TACTCCATAGAATTCAAAGTAAGTATCTCACTTGATCAGTACCCAGTGGT
GACCAGTGGTTGGGTAGTTAAAACACCAAGTACCCTAGCAGCACATGGAA
CCTATAGTTCTCCAAACAATGTTTTGAACCATCACCGAATCCATTGATGT
agactttttttgaaattttatttctgattctttatttttatttactaaGA
ATTGTGGAATTTTATAAAATCTCGAatcattgaaagtttttgtCTTACAG
ATTACAATTCAAATATTTATTCCATTCTCTTTTAGATGAAACTCATTGGA
TTTATCTTTTTGGCCTTGTTAGGCCTCACTTATGCCGCCCCACAATACCA
AGATGGGCAGCTACACATCCCCGATAAATGTTCTGATGTCCTTGCTGTCA
AAGTTTGTGATAACCTTGAAGCCATTGCCAAGAGATTAAAATTGAAAGCC
GAAGATGTTACCAAAGCTGTTGTCGATGCTGTCAAGAAAGGAAAGACCAG
CAGTGTTGAGATTTACAATGCTGCCAAGGATTTCTTGATCAATGAAGTTG
CCACAAAGAAATGTGAAGACTTCACTACTGTTGAGGTACAGTGACATTGT
CCTAAATATCCCTATTCTAAAATCTTTGCTCTAGCTCATTCTTCCAACTT
AAATATCTATCATTTGTGTTACATAAATCTTTGTTaaagaaatcttttga
aaaatcttaaagaTTTATAATTCTTTCGTCATTTTCAGAACTGCCAAAAA
CTCAGAAAGGTCGCTGCTTTCATGAAATTGAATGCCGAAAAAGTTGAGGA
ATTTGTCCGTAAGGCTGTTGCCGAAGGGGCCGTCCAAGCCGCCGACATCT
ATGCCAAGGCTATGGAATACTACAAGAATGAAATCAAAACCAAGAAATGC
GAAGATTTATTATCTGTCAGTGTAAGTCACTCAAAATTTGTTTCCTATTG
CTTTATAAGTTCGCCTACTTGGacaagccgtatatgtataaaagttgcga
agcgatccagagcctccttaattcgcaagttgcaagcaaaacatttatGC
CATACAAACACTGTATATTTAACGGCATTTGTGCAGTCTTTCCGAATATC
CTATCATTCGCAAATTTCTCTATAAGTATAAAAATGACATCTGTAGATTA
TCTTTCACTGATGAAAAGTGAAGCTTCAACCgtcctatttttcattttct
ataataattagcaaaaagtttaaagaaaaagttttgagaaaCTCCGCTAC
CTGTATTGTTGAAACCTACTGCATCTGTATTAAGAGTGGACTATTTTATC
CATCACTGGCATTGAATTCTTCATTTTATCAACCATGTCACTGCCTCAGA
GATGTATTAAAATATCCAGCAATTCAACAAGAATTTTGGAAATCGGAAAT
TAAACTGATCccgtttttctctttcttactTTGAACAATATTTGACGAAT
CGCATATCACTTAACTTTTTTTCAGCAATGCACCTACTTGAGAAACCTTG
CTGGAAAATTGAAAGTCAAATTCGACGATCTTGAAGACGCTATTAAAGAC
GCCTACCTTGAAACTCTTGGAGATGCTAAAGCTCTGGTTACCAAAGTCGT
CGCTGTCTTGAAAGATTATGCTTTGAACACCAAATGTGAAGATCTCTTGA
ACCCTGACgtaaatattattttaaaaattttttcaattttcttactATAC
TCTATATAGTTTGAACTCACATCAATTTGAAcgaaatttttatctttttt
taaaacaacCCTTCATAAAAGCTAAGTATCCGGGATCTTTCGGCCTTCAC
CCTACCCTAATTTGTCCGATATCTACGGAATTTGAATATTCATTAATGCA
GAGTACATGgaataaacaaagaaatatcTCTGGTATACTATAATTACTCA
ACCTTTGGCATTCCCAACCCGCGGAATATTTATCGAAATCTAGACATGTT
AGGACAAGctaatcataaaaaaataaattgatatataatatataataaat
atttttccatgAACAGCTTTGCTCCGCTCTCCGACGATTTGCTGCAACCA
CCAAAGTTCAATTTCCAGTTTTGATGGAAAAAGCTGTAGACCTTTTGATC
TCTGGATACAGTGCTGGTAAAAGCTTGTTGAATGGAATCTTCAAAGCTGT
TGACTATTTCTACGATTGTACCGATGTTTTTGACCAATCAGTAAGTGTTC
CAACTTATCTCTGACTCTTTTAGAATCTTTGAAGACACCCATTTGAAGAT
GTTCTGCTTAAAGTTGCGTCTTATTTGTATGATGTACTGCATATATGCTT
AGCGTTGACCACCTAGAAACACCATATACATCCCTGCATCAGCAACCCGG
TGGATAACCCGGTGAAAATAGTTACCAAAGACGTCCTGGTTTCAAACCAG
ACTCACTAACGCTACCCTTGTAGAAGATTTTTGATATCGCACATTCAAAC
ccagtgaatttttttctttttttacagtCACCCCGGTGAACTATTTGCTC
CTTTCTATTTGATATTTTCTGTATCTTTTTAAAATAGTCATGTGACAAAT
TGAAGAAAGTTGCTGAATTCATTGGATTTGGTGTTCAAGAAGTTGAAGAA
TTCATCAAGAAATATGTCCCCATTGCTGTTCAAAAAGGAAAAGACCTCAT
CAAAAACTTCCCAGAGATGATGAAGGAATTAGGAAAATACTTGAAGGACA
AGATCTGTGATAACACTATCCTATGTGATGATGCTCAANTATGTCCCCAT
TGCTGTTCAAAAAGGAAAAGACCTCATCAAAAACTTCCCAGAGATGATGA
AGGAATTAGGAAAATACTTGAAGGACAAGATCTGTGATAACACTATCTTA
TGTGATGATGCTCAATTGAGTGACGAACAATTCATGTTTGTTGATCAAGT
TGGAATCTTCGATTGGGATTTAATCAAACAAAAGATCAAAGAATGTAAGT
GAAATGATTTTACTTCTTTGATTAGCGACGCTAGCACCCACTCCCAAATG
CACCATCTCTCCTGTTAGATTTATGTTATTCAAAATCATTGACTAAATGT
TGGTAACTCTTCTGGAAAGTATATTCTTTCTTAACTGGTTCGTTTAGCCA
TTGACGCTTGGATTTTGACCTCGTTGACTGTTTCTTCAATTCTAACTGAC
TTATTTCTTTTAGACATTGAGATCAAATACCCAGGGCTCCAAGACAAAGT
CAAGCAACGAGTTTTGGACATTATCAGCAAAGCTACTAGCGTTAGAGATC
TTCTCTGGAAAGCTGCCCAAGAAATTGTCATGGTCGGTGGAGAACACGCT
GCTACcattaaacaaattttgaaGGATTTGGTCGCTAACATCAAGAGCAT
TGTCAATCCACAAACTACCTACGATGCTGTTGCCGAAGATGAAATCGCCT
TGTTCGATTATGACTTGATCAAACAAAAGATCAAAGAATGTAAGAAACTT
TTTGTTGATTTCGTAAAGTAGTTCTGTAAACATCATATTTCCACCCGAAC
TGAGTGCAAATATGCATCGAGAGAGCATGGGACATGGGAACGTAATAATC
ACTGTACCATAAAATATGATATGACCATTGAAAAATCACTTGTGTCTTTT
TTTCTGGATCGTTATATCATAGCAGGCGTAAAAGTTTGAAGTTACTAAAT
ACACTTCTCTCCATTTTCTAGACATTGAGATCAAATACCCAGGACTCCAA
GACAAAGTCAAACAAAAAGTCTTAGATGTTGTCAACAGAGCTACCAACGT
TGCAGATCTTGTCAAAGAATCTTTCAAAGAAATCTGGCAAGTCGGTGGAG
AGCACGCTGCTTTCGTCAAACAAATCTTGAAAGACTTAATTGCTAACATC
AAAAACATCGTCAGCCCATCTGTCCCACAAATCTCATACGATGCTGTCTC
AAGACTCCAAGCTTTGAAAGACAAAATCATGAAATGTAAGCAGATGCTTA
TTGTAAATGTTTTAGGAACGGCCTTCCAGAACAATTGTTCTTTTAATGCG
ACGTGTGGATAGTATCCTATAAATCATGAGTGCGAAGGATTAAAATAGAA
TCTCAAAACTCCAACTGAAACCTGAAAATTTGCGGCTTATTATTGACGAT
CGGTACATCTTTTTAGTTTTAGAGTGGTACATTTTTCAGAACCAGGTGGC
AAGAATTTTATTTCCATTCCTCTTGTGAAAAGCCATAATGCCCTTGCAAC
TTATGTAGAAAGTGACTTGCTAAACGATAATTACGGAAAACCTTTCCTTA
TTAGATATCGAAGCCAAATATCCAAAACTTACAGCTGACATCAAAGCCAA
GATCCAAAACATCTTCGACAAAGCCACCAACATTGGCCAAATCATTGCCA
ATGCTATCAGTGAATTACTGAGAGTTCATGGAGATAATGCTGACATTGTG
AAACAAATCATCCGTGATTTGATCAAGAAAGTCAAAGACGAACTTAAAAG
TGGAATCTCCAAGAGAAGTGTCGACTTTGATGAACTCAAGAACAAATTGA
AAGAATGTAAGAAGACTTTTTCGCGTGTGTTCATGGATCTTTGAAATTAG
AATCCCTCAGTTATGATTATGATCCCTTTAGAAGTCTTGATTCTCACTTT
ATTTTCCACGACTTTTTCAAGAcggaaattatttttaatctagCTCTTCA
ATAATATACGCTAGCTTGAGTACCAGCGTAACAGTAGTATTTCAGTGACT
TATCgaatagtctagcaagctagacgactaatttatacatagtagaaata
aagcaaaaagtaaaagtaatgaatagaacaattttagtcgtctagaaacc
tttgtgcactaactccaaacaaaagaaaagtgttaaCGAATGATAATAAA
CTGcgcttttcattttatttcagaTTTGGAAAACAAGGTACCACAACTTC
AAGCTCAAATCAAAGAACAATTGAAGGCTGTTATTGATAAAGCTCAAAGC
AAATTTCAACTCATTCGAGAATTTATCAAAACTGTCTGGCAAATGAGCAA
AGACAAGAAAGATGAAGTTGTCAAGGTCGTCAAAGAATTGATCGAACAAT
TGAAGAACTTCAACTAAGAAACTGGTGGAAGCTTTTgtaacaaagatttt
taatatgaatttatcttctttgaaagaaaatgaaatatattgTAAATCGA
TTGGTTGTTTTCCTTGAAATCTTTGCTTTTAGAAGCTTATATGGTATCTT
GAACAATAATTTAAgcagtttgttatttttaagtaattccaatatattct
agtaaatgtcaaaataacaaaaaaacaagcTTCATATTATAAGTCTTCTA
CGATGAATGATTAAATTTAGGGTAATAAATGAATATCTTTGTTTGACATT
CTGTTTTTGATAAAACGCAGATcaattttcagtttcttctCCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00023561TCONS_00023561Clytia hemisphaericatranscript
TCONS_00023562TCONS_00023562Clytia hemisphaericatranscript
TCONS_00023563TCONS_00023563Clytia hemisphaericatranscript
TCONS_00023564TCONS_00023564Clytia hemisphaericatranscript
TCONS_00023565TCONS_00023565Clytia hemisphaericatranscript
TCONS_00023566TCONS_00023566Clytia hemisphaericatranscript
TCONS_00023567TCONS_00023567Clytia hemisphaericatranscript
TCONS_00023568TCONS_00023568Clytia hemisphaericatranscript
TCONS_00023569TCONS_00023569Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00023565-proteinTCONS_00023565-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:189875..197217 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11	0.1	0.07	0.04	0.02	0	0.04	0.02	0.03	0.16	0.11	0.15	397.38	400.6	447.94	1356.39	183.76	228.01	1341.84	1211.6	1055.15	1181.63	878.38	1276.33	1585.49	1841.22	0.64	0.29	2.14	4.82