XLOC_015439 (gene) - C. hemisphaerica

Overview
NameXLOC_015439
Unique NameXLOC_015439
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000626:129368..138358+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_015439 ID=XLOC_015439|Name=XLOC_015439|organism=Clytia hemisphaerica|type=gene|length=8991bp|location=Sequence derived from alignment at sc0000626:129368..138358+ (Clytia hemisphaerica)
gaaaagttAAAAGCCAAAGTTGATttgaaaagatttcaaaagaaaCAGAA TCTCATtcgtttttcaagtttttcaagtCAACAGGTATTGTGTTGATACT TTTgggtttctctttttttttaaatcatttttgtagttttttgtaTCTGT AATATATTGATGCTGGAACTTCTAagagaactttttttaaagatttgcgt TTACTTTTTCCTATGGATATGCTGTACCCCATACCGATACCAATACCAAT ATTCATTTGTGCCGCTGTTACCGAAATCGTTCAAATTTCAATAGTAAGCA CCCAAGTAAATAAAGGTAAATACAGCAACCTAAGTAAGCTTAAAGGTTAC ACAGACACAGATAAGTATTAAGTTTTTTCTCAAACGGCGTGATTATTTTA TACACTTGACTTGCAATTGTGCTGATACTTTtgggtttttcttttttttt aaatcatttttgtagttttttgtaTCTGTAATATATTGCGGGAACTTCTT agagaatttttcttttaagttttGCGTTTACTTTTTCCTATGGAGATGCT GTACcccataccgataccgataccaATATCCATTTGTGCCGCTGTTACCA AAATCGTTCAAATTTCAATAGTAAGCACCCAAGTAAATAAGCAACCTAAG TAAGCTTAAAAGTTACACAGACACAGATAAGTATTCAGTTTTTTCTCAAA CGGCGTGATTATTTTATACACTTGACTTGCAAGTAAACGCTTGAATTTTT GCAGCATCAAGATTAATTAAAAGGATTAAATTTGAAAGCCATTATGTCCT CGTTAATACCCATCTAAGCTTCCTACATATAGAAGCAAGAAATTCATAGA CTAATTTTCAATCTGTCTATTGCTACATTAAAGTTTGCACCTAGAAAATT GACCTCGATAAACCCCCTTGTAGACTGTGCAGTATAGGCTGAGAAAATAA CTTTTgggtttctctttttttttaaatcatttttgtagttttttgtaTCT GTAATATATTGCTGGAACTtctaagagaattttttttaaagttttgcgtT TACTTTTTCCTATGGATATGCTGTACcccataccgataccgataccaATA TCCATTTGTGCCGCTGTTACCGAAATCGTTCAAATTTCAATAGTAAGCAC CCAAGTAAATAAGCAACCAAGTAAGCTTTTAAAGGTTACACAGACACAGA TaagtatttagttttttctcAAACTGCGTCATTATTTTATACACTTGACT TGCGATTGTGTTGATACTTTCGGGTttcgctttttttttaaatcattttt gtagttttttgtaTCTGTAATATATGGGAACTTccaagagaatttttttt aaagttttgcgtTTACTTTTTCCTATGGAGATGCTGTACcccataccgat accgatatatCCAATTGCCGCTGTACCAAAATCGTTCAAATTTCAATAGT AAGCACCCAAGTAAATAAGCAACCAAGTAAGCTTTTAAAGGTTACACAGA CACAGATaagtatttagttttttctcAAACTGCGTCATTATTTTATACAC TTGACTTGCGATTGTGTTCATACTTTTGGGTttcgctttttttttaaatc atttttgtagttttttgtaTCTGTAATATATGGGAACTtctaagagaatt ttttttaaagttttgcgtTTACGTTTTCCTATGGATATGCTGTACcccat accgataccgataccgatatccaATTGCCGCTGTACCGAAATCGTTCAAA TTTCAATAGTAAGTACCCAAGTAAATAAGCAACCAAGTAAGCTTAAAGGT TACACAGACAGATAAGTATTTAGTTTTTTCCTCAAACTGCGTGATTATTT TATACACTTGACTTGCGattgttttgatacttttgggtttctcttttttt ttaaatcatttttgtagTTATTTGTATCTGTAATATATTGCTGGGACTtc taagagaattttttttaaagttttgcgtTNTCATTATTTTATACACTTGA CTTGCGATTGTGTTGATACTTTTGGGTttcgctttttttttaaatcattt ttgtagttttttgtaTCTGTAATATATGGGAACTTccaagagaatttttt ttaaagttttgcgtTTACGTTTTCCTATGGAGATGCTGTACcccataccg ataccgatatccaATTGCCGCTGTACCGAAATCGTTCAAATTTCAATAGT AAGCACCCAAGTAAATAAGCAACCAAGTAAGCTTAAAGGTTACACAGACA GATAagtatttagtttttttctcaaactgcGTGGTTATTTTATACACTTG ACTTGCGattgttttgatacttttgggtttctctttttttttaaatcatt tttgtagTTATTTGTATCTGTAATATATTGCTGGGACTtctaagagaatt ttttttaaagttttgcgtTTACTTTTTCCTATGGAGATGCTGTACcccat accgataccgataccgataccgatattttATTGCCGCTGTTACCGAAATC GTTCAAATTTCAATAGTAAGCACCCAAGTAAGCTTAAAGATTACACAGAC ACATAAGTATTTAGTATTTTCTCAAACTGCGTGATTATTAtaattatata ctttttataCACTTGCGATTGTGTTGATATTTTAATTTCtgacataaaaa aataaatttagacaAATGGTGTCAACGCAGTAttcattttccttagaaaa aacTGAcatcacaatgaattttcctaacaaCGGACAAATTCTGGGCAGTT TAGGCTTGTTGTCATGCAAAAAAACGCAATTGCATTgtgcaaaaagccgt gtagcctgCTTCAAAAAAGTAACTGATTAGCAATGCATATGTTATATTAA TATTAACTTAAAGGTAATTAGACTATTAATTGACTAAAAAGTGTTTTCTC AAAGAACTTATTGTTACATTACTGCAACAAATAGCCACTATGggaagatt ttccaaaattttcccataCATCAGCCTCTATTTTCCTTTCATAGTGATGA ATGTTTTATAatctattttcttacattttctaGGTTATCATCAAAGTGAC ACAAATATCTAATATGACTGAACAAGCAAACTTTTTGGTAGCTCGAGCCT GTAGTATTGGACTGGACATGGTGCTACATCGCCCTACACCTACTGATGGT AACTGCTTTTATCATGCTATTCTTGAGCAAATTCATCGGCCCAATGTTTA TTTCACACTTCCAAAGGAAAAACGATTTGAAGACATTGGAAAATTAAGAA TAGCAGTCATTGAATTCCTGAGAGACCTGACACCTGAGACGGCGTTTTAC CAATATTATTGTGAACAAAATCAAAATCGTTTCTCTGGCCCTCAATGGGA GATGTATTTGGCTAATCAAGAGAAGAACGAAACCAAGGCTGATTTCCTTA TTCGTGTTGCAGCTGCCTTTTTTTTAGATGTCAACATTTTGATCACTAGT CAATCAAGCACTCAAAACATTCCATATTTTGAATTGCACCCTGGGGCTTC TTCTGGCATTCAGATGTTTTTGTCATCATCAGATTATAATCTATTTCAGT CCCTCGTACCTTCAACAGAAGAAAGTGTTTTACCATTTGATGTTGAAAAC TCCCTTCAAACAAGTAATTCTAAGAAGACAAGGTTCCCTTCTCCCAAAGA ACGAATTGCAAAGAGAGCATATTATATGGTTGCCCAAGCACGCTTCATTG GTCTTGATGTCTCGCATCACAGTCCAACACCCGGAGATGGTAACTGTTTT TTCCATGCCATCGTAGAGCAAATACACCGAGCTACTGTTTATGAAAGACT CCCTGAAGATCGAAGATACACAGACATTGGAGAGTTAAGAAAAGCAGTTG TCAAATTTCTTAAAGACATGCAGCCTGGTACAGACTTTTATCATATAGTC CAGAATTTCGGATTACAAAACGTCATTATGCAAGACCAAATTAATCTGGG GGGTGATCAATGGGAAATATTTTTGGCAAATCAAGAAAAGAATGCAGTTT ATGCTGAGTACATTCTCTGTCTTGCAACTGCCTATTATTTGGATGTAAAT ATCTGCATCACCTGTGAAACAAGCACACAAGATAGACCGTATTTTGATTT GAACCCTGCAGCTTCTTCTGGCATAGAGATGTTTTTGGCATCTTCCAACA ACGACCATTTTCAGTCATTAGTACcaacaaatgaaacaatattGCATTTT GAGGGACGCAACTGTCTTCAACCAATCTTCTTTTTTGATGATTGTGATGA AATGGAAATGGACTTTAGTATATCTGCGCGTGGTAAACACAGTAGTGGGT CTGATAGTAAACAAAGACGTTACAAACATCACCATATTTCACATTCAAAG TCTcgattggctgaaaaaaaactCCTTCAACAATGTCAAGACAATAATGT TCCCTATGTTCAACCTGCTAATAATGAAACAGACGAACAAACCAAATCAC GCACAAAAAAgataaagaataaaatcaaatatcaaagaagaaaaataaag cagCAGAAGCAAGATGATTTAGCTGACTTCAACAATTTGCAACAATGCCG AAAAGACAATGTTGCTGACAATATTGACGTCCCTATTGAAAATTCACAAG AGGATCCTTTACAGCCAGATATCCCAATCATAGAGGATCAAAACCCACCT ATTCCAATGGATGTGGATATTAATCCTGTACCTGGTAACGATGCTGTCCA GCCCGATGGCCATGTGTTTGACTCTCTTCACCCAAATCCTGAGGTTGGTC AATCAGTTATTGACTTTTTGGAGGGTGAAAATAATCATGGCGTGGCGACA TGTGTAGTATGCAGAGAAACACGTCCAGTATACAACCCATCCTATAACAA TGCTCAAGCACGTGTCAAAATAAAGGTCTGGAAGGTTAACAAAGCTGGCA TTTGTGATCGATGTCGAAAGGATCGAACAAAAAGAACCTCTGAGTCAAAC AGAATAAACAAGAGGAACAATAGCTCCAACAAGGGTAAGGAAAAACAAGC ATCCCTGAAGAAACCTGCAAAGTTTTCTGGACACCTTACAACTGATGATA AAGATTTGGGGCCATCTTCAGACAGGATCCGTCACAATGGAATGCATTTT CTTCCCACGCCACCTTTTCTTCAACACCTTACCATGGTTGAGAGATTGAT GATTGCTAAAATCACTGTATGTACTAATATTCATCTACTTCGTTATGGTA TGCTCTCAAGTAAAGGTCACAGTGTCAGCATCCCTAACAAGATGTCGATA GCTAAACACCTACCATTGCTGCCAGAGGAGATTGGTGTAATcattttgaa aaggaaaaatcaaaacatcactAGTAAGCAATATGGTGTTAGGAGACATA AAGTTGAGCAAGCACTGAATGGACTTTGCTTTGGATATCCAAATGGAGGC TATGAAGATGAACAGCCTGAGACCCAAAAATATGATGGGCCAAACTGTAT GGGTGTTCAGCTGAATGGAAGATACTTTCAATACTTCCCCAATTCATATT ATGCTGACACAGTCATCCATCAAGATAGAATAAATCAACTTCCAGACGAG GCCGCTCAGCTGCCAGGACTAAAAGTTGTTGAAACACAGGAGGACATGAC AGAAGATGAAAAAGGACCTGCTCCCAATCAATTTTTCATTCCATTCAACG AGGGAGATGACAGTGTTACTGGGTCAGGCATCACCTGTCCTGTCGATCCA CAGGATGCTGATAAGGAGCTCAAGATGATCATACAAAAAATGACTGGATC TGAAGAAATTCTACATCAAGGCGGTGTTGCATCCGCTGATTGGGATCGAA CTCGAGAAGTTCCCATAAAGGAATTGAAAACGCCTGGTTTTTTTACCATG GTTGCTCCTGACATCTTTGTCAATGGAAGTTGTGACATCACCTGCAAGAA GTTGGTAACTGTACATCTCGACGAATGGATACaacatatttattttgttg GGGAAGATCGTGTTCCAAAGCAtccatttctgaaatttcttctccataac CTGAAATTGCGGCAACAGGCACTTGACCATGGAAGCTTTTTGGTCGCCCA GCAGTTGAATGATGCACATCTGACAATTGACGAACTCAGAACAAATCTGA ATGAAAACAATGATCAGAGTGTCCCACTCAAGATCATAAAGATGGGTGGT AATCTTGTCAATACCCACCCTTACtgggtagaaagaaaaaaagagctTGA AGCATTTGTGCACTATCGCAGAAAGGAGTTTGGTGATTTACCCGCATACT TCCATACGAACTCCATGGCAGAGTTCCATTGGACGTCTCTAGCCTTAATA CTGTCCAGGTATAAGGCCCAATCATGCGGCATTAATCAGCAAGACTATTA TGATCGGCTTTCAACTGATTCAAGGTTCTTCAGACAGACAGTGCTCGAAA ACCAGCACATTGTAACAAGCTACTTCAGTGCCAGGACCATCAATTATTAC AATACTGTAATCTCTAAACTTCTTCAAACAAACTCCTTTTGGTTCAGATT CGAGTTTGCCAAAGGACGTGGTCAAATCCATTCTCATGGTGTTATCTTTT CTGAAAAACATGCCAAAGAGGTAGAAGAGAGTCTTGATTGTGGAGAAGAA CAAAGAGCAAGAGAATTACATGAATGGCTTCAAACTGTATCTAAGAATTC TGATGGGGTATTCTCACCAATGTTCACGAGTTTGCATCCTGCTGGCGGCT CAGAGGTTTTAAcagaaaatgaagatcttgaaTGGAATCCTAATAAAGAA GGATGGGCGCCTCCAGAAGGAACAAGAGACCCCCCTGACTATGATCCTTT AGCAGTACCTGCTCTCGAAACATGTACTAACGAAGATGATTTGAATGAGT TCCACATAGATCTTGCCAACATGGTCGCACTGCACTCTTGCAATGGATAt tgtttgaaaaagaagaagaaggaatCTAAAACACGTTATTGTCGTTCCCA TTTTGGTAAAGAAGATCCAATAACAAAGAAAACACCTGGTAAAGAACTGC ATCCCTTTGAACCTCGCATCGTTTCTGGTGGTCATCCAAGATATGAAGGA CCTCGTGATCACCCTCGAATGCTGAATCACATTAAAACTTTGCTCATCTC CTGGCAGGCCAATTGTGACTGCCAGGCATTGATCGATCAGGATCTGTTGA ATTTGGTCAAGTACATTTGTTCCTATTGCTGCAAAGGAGCGTGCAGCACA GAGGATTTTGTCACCATTTATCGAGAGTTGTTGGATTCTGCAGAAATTGG CACAACTGTGAAGAATGTTACCCATCGACTCTTAATGCAGATTGTTGGCA TAGTGGATGTCCCGTCTGCAGCAGCAGACTTTATCAACGCTGGTGGTCAA CTCTATCATTCAACAAACAAGATTCAAAGAGTTGGCCTGAGTGGCTATCG TCAACTCAACTCTAAAGGACcgaaaaatgacgaaaatacTACTAATGAAA CACCTTTAGACCAATTTCTAGGTGAATCACGACGACAAGAAGATCCTGAT CGGACTCTATATGACAATTCCAAAATATGCAGATGTAAACCTCCATGTGG ACGTGACCATGTTCCATTGTTTACTGGAACAGATGTCAAACCAATTTGGC CACTGTCTGAAAAATATTGTAAAGGTCAGTTAATGATCCACTCTAAAGGC ACGTGGCGAACACCAGATGATCTGAAAGATGAAGAAGAACAATTTTCTGA TGCGTTCGCTGATTTCCTCAACGACAGTCCTGACTGCCCAGAATTCTTAA AAGAAATCGTAgctttatcaaaacaaaattatgaCAAGAAAGTAGAAAGG GATAGGCGAAGAAATAGGAATGTCAATCAAgatgaaattcaagaaaatcg GGATGTGCAGCTTAGTCAACCACCATCTATACAGCTTTCCCAAGACTCCC AACAGTCATCTCAAGATTCCGTGTATAACGACCTGCGACTTGGAGAAGCA TTGTTGAGAGATATCAGACTGAACAATAATGTAAATTTCGATGCCATTAT TGGTGAAGCAAACCTCTTTGATGGTGGACCAGGCTTTGATTGGAACCTGT ATGGCAAAGAATGTTTCGGTTCCAACGAATGGCCAGCTAATACCAAAACA TGGTTAAAAGACAAATATGATGAGGCAGAAGACATGATCAACACTCATCT TAACAACCACGACCTTCCAGATGTCAATCTTTTATGGGCGAATCCTAAGC AAAGGCTTATTATCGCAATCAACCTAGAAAAGCTGTTAGATGTTGCCATC GGTGAAGAAGAAACAGAACCGTTACGCCTCCTTGTTCAAGGATTTGGTGG TACAGGCAAAAGTTTCACAATAAACGCTATTACCTATATTGCTCGGCGTT TATTCAGACGAAATGGATCAGCCCTCAATATTGCTCCAACTGGTGCAGCA TCTACCTTGATCCCAGATGGAAGAACTCTTCACAGCACCACTGATTCTTT TGATGTCTttttaacttcttttttttttcgttcataGATTGGTGAATGCA TCTGGAGATCAACTAATCACAAAAGTTTGAAATTCAACTTTATTATTTAG CTATATCGTTTTCGAGTGCTTTAATCTACTAGCAAGTTGAGTATTTCTAA TGACTATTATTGCTTATGTGGgactttccaaaaaatgttgtaAATGGTTA AAACCCAATGCTATCTACTTTATATCTTAATTTTACTTCTGCAGATCAAT CTTGACGATGGATACCGAACTTCATTACCTATTTTCTACctatttatttt cattatctACATACACCCGTCACGAGACAACAGGTATTACTTATAGTAAA TCGGATTTATTTTTACTTATCAgcgtttgaaaaatcttttttgcgaTTCT TCCAAGAATAACTTGTAACAGTTCCTGTAAATTTTCGTCAAAACTTGAAA GTGTATTTTAAGCAAAATCTGATTACTTGCTAAAATTAAATATGTGcgat atttactttttacctTTCCTGTTTTTACTTGCAGGTCCCAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00027418TCONS_00027418Clytia hemisphaericatranscript
TCONS_00027419TCONS_00027419Clytia hemisphaericatranscript
TCONS_00027420TCONS_00027420Clytia hemisphaericatranscript
TCONS_00027421TCONS_00027421Clytia hemisphaericatranscript
TCONS_00027422TCONS_00027422Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00027422-proteinTCONS_00027422-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000626supercontigsc0000626:129368..138358 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81 1.3 1.34 0.06 13.45 6.86 5.79 10.62 3.28 1.79 5.72 4.98 1.35 1.37 2.55 2.49 1.78 4.56 2.49 2.78 4.74 4.09 1.24 2.93 0.18 0.68 7.32 12.46 3.58 3.13