XLOC_016121 (gene) - C. hemisphaerica

Overview
NameXLOC_016121
Unique NameXLOC_016121
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000681:2617..13191+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016121 ID=XLOC_016121|Name=XLOC_016121|organism=Clytia hemisphaerica|type=gene|length=10575bp|location=Sequence derived from alignment at sc0000681:2617..13191+ (Clytia hemisphaerica)
CGTTCGTTTTAGATATTATATTACTTTTACATGTATCCTGGAAGAGCTGT
TCGGAAGGAACACCCACAATTACGCACGCCCGTCAAAGACCTTCAAACCA
GGTTTGTATTGCCAGCCATCTTACGTCTTTTCGTGTCATTGTACAGTATA
CAAAATTTATAAGCTTGATAGAGTGAACttatatctttaaaaaaagtcaa
taaGCGGGGACCCTTATAACCGGTATAACCTTACCTATAACCGGTTCTAG
TCTGAATGACAGACAAAACTGCATCACCACGGACCCGATAGAGGATATCA
GAAGCTAGGCTACTAGCAACCAGATAAGATGCCCGTAGTCTTTATGGCAG
GCAAAACCACAGGTTTTATGAGGAATATGAATCTGAATCACGTCTGCATA
GTAATTTCTTGTTAAGCAAGTTTTTTGAAGTGGAAATCGTTGGTgtcatt
aaaatttcatttagATAGCAAAGTACACTAGTTCATGAATTAAACATTTT
CTTATGaattttgttgacaaaaattaaattaaactaTTATTGCTTAACTT
GCAATGTCTTTTTCGAGTCTGCACCATTCAATTCCAatacagggggaggg
ggtggaCGATCCTTGTCAAAACCAAATAATATTCTTATACATgcgtggat
accccctggaaaatggcgaaatttgctaaagaacccttggaaaaattatt
ttcataccttaaaagtgAGGTTTGACGAAGTAAAAACtgtattttacccc
ctggaaattttagaatagcCTTTTATCTCCCGGAAAAATACACCtttata
ccccctggaaattcttctcagaTTACTCCCTGGAAATGTTTGTTCAACCC
CCTAAATATAAAATGGTATGACCCAATACGTAATACATTATGGAATTTTA
ATATCGTTTAGAGTAGCCCAGCAATCACCATCGAATTCAGTGTCACCTTT
GGTTTCACCCAAACGACTCAATAAACCGAACGGAAAAGGTACTGGTCACA
ACATCCATCCTTTTTGTTTAAGATATGCATgcttttttttgtaagcatac
AAAATTTCGTAAAACAGACtcggagatgcttaggtcgagggcttgacaag
gctgaaaaatgcgCATAAGGGTGCTTATATCCCAAACAAAATTGTaggga
aattccgaaaatcggTAAAGTCCCAACCAAGataaggaaaataatttttt
tgtaggctcaaggtaatgtttagcatatgcttaaatgTTTGCCATATCTG
ATCctaaatatgcttataagtgcaatgcctTTAATATATATGTATTGTAC
TTACGGAACAATACTAAAGgaacaactttttcaaattagTTGTACATCAG
CACTACCcgattttttttggctttttgacGCTTTTGATTGTTGTGtgaac
ttttgaataaaaatgttttcgaaGTTCTTTCGGGAATATTTATAACAAAT
TTAGAAATTGGGCTATTCATGGTTCGTAAATTCCAAATTCAATTCAACAC
AAGATTTTCGACGACAGCTTCCCGATAGCGATAATAAATTGATAAATCAC
ATTAAGGCACAAGTGGTGCATATGTTTTTTTGAATATGGTCccaaaaaaa
acgaatttttgcaaagatttggacagaaattcttatatTACGACTGTTAA
ATGATCCGTTTTGTTCTCTCAGGTGAAACACTTTTGCACGTGGCTTGTAA
TAAGCGCAAAATTCATCGAATCAAAGCGCTCATCGAAATGGGTGCTAAAG
TTAACACACAAGACAACGCAGGGTGGACGCCCTTACATGAGGCGTGTTGC
TTTGGTAACCACGAAGTTGTGCAAGAACTCATGAAAGCCCCCGGTTAGTC
TTATCAATTGTGAATTATCGCCCTGAATTTCTTGAGAAATATTGTAAAAG
ATCATCTAAAATACAGTTATGCGAGGGACTTAAGTTGCAATCTCACAGTT
TTCATTTGACTTTATTTCGCGAAATAGGCAAATTCCCGCAattaaaatag
tgaaaatagcACGAAAATCACCNTTTCATTTGACTTTATTTCGCGAAATA
GGCAAATTCCCGCAATTAAAATAGTGAATATAGCACGAAAATCACCacaa
aactttttgatattttctagATATTGATTTAACGTTGACACGTGGTAAAA
AGACGCAATGCATTGATGGAACTACCGCATTGCATGATGCTGTAGAGAAT
AATTTCCTTAATATCGCCGAGTTCTTGTTACAAAAAGGAGGTATGTGCAT
AATAGAAAAGGTTAACCAGTCACACCTTCACAGCtgtagcctgtaccaaa
ctcttcttcgctgactgaaaagataacgcgAAGTTAGGTTTGTGACGGTT
ATGCAGCATTTCGTGCCTCagacttttttccaaaaatttctgAATGTCTt
agcctatctctatcccaacacgcgattttttNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGACGTCAC
TAGCGACGAAAAAAGATGGCGGccgaaaacataaacaaagaaggGCGGgt
ggaaaggaaaagaaaaatcttgaatgttGAGACTTATTGCAGAATTTTTT
AATATTGTGAGGTGTGTTGCTGTGTCGATTgtacaaaatgttacaaaaat
taaacacaacaaaaaatgtattgagtgttgtttataaaatttcactgtct
aaaaagtaaaaagcagATAAAGTAACAACCCTACTCTATCAATAAaagca
ttgaaaataaattgctcaaattttttgaaatagaaaatataaaGCTTACC
ACGAAACATAACGGAGGAAtacaagaaattaaaaaaaattttatgcaCCT
AAAACGACAAAAGATTCTTACcactttgtaaaaaaatatgcaaaattccc
ttgaaaaaagtaaaaaagtataaaatatataaatcagaTTTACTTTATTG
ATTTCTGGATTTGTACTTCGCATATATCAAgctgaaaaatgttttgattt
tttcgaaactttcaaataattatttctaTACTCATAGTGGTCTCCGGTAG
ACCTAGAATCCACAAAAGgaaagatagatagatagatagatagatagata
agatagatagataaatatATTTACCGTGATAAAGCTATATGCGATATAAG
ATGTACAGGTCAAGGATAGCTGTTAAAAATAAGtacatgttttcattttt
tgtgttaaaaataaaaatactagctcaatttataaaatatagTAGGATGT
TTATATCAATGTATGTTTGCTCAAAGTATAAATAGTAAACTATATATCCT
ATTGGCTGCTGTGAGTGAAAAGAACGGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCGATTCCCT
GGGTGGTCTAAAGTGTATAACCCGTAAAGCTTTGTTCTGAAGGACTTCAA
TTTTCTCTAGAGAGGCTTGGGTGATATATCCAATGGTTTGAAGACAATAA
CTGACATGAGAGTCAAAAAGTGCATAGTAGACAGAGATGAGTGTTTTGAA
GTCTACGAGATGTCTAAGTTTAGACAGAAATCCAACAGTGCGGGAAAGTT
TTGTAGTAAGGTCATGAATATGAGGATCCCAGGAGAGGTGCTCGTCAAGA
ATGATTCCAAGATACTTAACCTTATTTGTTGGGTGAATTTTCTGTCCACT
GAGTCTGAAATTCAAGTTTTTTGTAACTATGTTTCTGGATGATCTAAACA
GGATCAATTCAGTTTTAGAAGCATTAAGACTAATTTTATTAGCTCGAAGC
CAATGGACTAAGAGGGCAAGATCCCGATTTACTTTCCTGTTaagcttttt
taaagattcgtcGCAGCAAATAAGGCTTGTATCATCTGCAAAGTGAATGG
TTGTAGAGTTTTCTAATGATAAATGCAGGTCATTTATATAAATTATAAAT
AGGAGAGGGCCCAGAACTGAGCCCTGGGGGACACCGTGACTGACTGGTAT
GTATTTTAAAAAAGAGTTCCTTATCTCGACGCATTGAGATCTGTTGGTGA
GGTATGATCTAAGTATTCTAAGAGTAGGACCTCTAATGCCGTAGTGATCA
AGTTTGCTGAGAAGTATGTCATGTTCCACAGTGTCAAAGGCTTTTTGTAG
GTCGATGAAAACTCCAGCAGCAAACTGTCCAGTGTCCAGGGCTTTTCTTA
CTAGTTCGGTTAGAGCAATCACAGCATGATTTGTGCTGTGACCTTTCCTA
AAGCCAAATTGTTTGGTAGTGATAGTATTAGTATCCTCAAAGAAACGGAC
TAGTCTATAGTgtataagtttttcaaaaattttgtttatgtttgacaGTA
AGGAGATTGGTCTGTAGTTGCCTACTTTTAGTTTAGATTCTTTCTTGTGC
AACGGTTTAACCGTTGCTTTTTTCAGACATTCAGGGTAGATGCCATTTCT
AATACAGTCATTGAAAATGTGAGCTAGGACAGTGCTTGCTGTTGGAGCTA
TCAACTTCAAAAAGGAAGTGGGAATACTTGAAGGGCCTGAAGCTTTGTCA
GTAGCAAGTTCATTGATGAGTTTTAGGACTGCGGTAGAcgtaattttatt
aaaatacatGGAGTTGAGAGCCTGATCACCTAGAAAGTCagtaaagtttt
tgtttgttggaGGAAttagttgttttgttttttcagcaATTGACCCGTAA
AAATCATTGAATGCTTCAGCCATTTCTTTGTCGTtagtaatttgaaattt
gttatGTAGGATAAGTTTAGGGGAAAGGTCTGTGTTTGATTTAATACCAA
TGATCTCATTTACAGCCTTCCATTTTAGTTTCAAGTCGAGTCTATTCTCA
GAGAAGAAGTTTTTATAGTAATtgtttttgctcaattttaGGAGTTTGGA
GAGCAGATTTCtgtgttttttaaagttttcatgcttttgtttttttagtt
gAGTGTTTTTAGCCTTCatgaattttttatataatttgttttttgtgGAA
ATGGATTTAAGAAGTCCTTTTGTGATCCAAGGATTTTTTGGGATGTGGGC
CTTTTTCCAGGTAGTTTTTATTGGAGCATGAGTATCAATTATTGAGTTGG
TTTTGTCAATGAAGGTTTTTATtcagggttcagacagaccttcgaaaata
aaattccctgagtttccctgaattttaatcaattttcaaaggttttttcc
ctgagaaattcctcattttaactactttttccctgagtatcaagcaaacc
ataaaaactaagcagagtcaaaagagatgtatctttaaataaaaggcaca
caaatcaaatggtaaacctaaggtaaaaattaaagctacaaatactgcat
atgaataaacactttaaaactaaaaaaacttttaaatctgttttttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaaaaaaacttttaaatctgttttttccattcattcttcaaaaaa
taaaattccctgagtttccctgagcaGACTGGGAAAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggaaaaattttttt
ttccctgggtttccctgagtttccctgatttttctgaaaatttatcatat
ttccaggttttccagggtctgtctgaaccctgtTATTTTTTCAGACGGAG
GTTTGCCGCGTAGAGAGTCAGCCCAGTCTATAGAGAGAAAATCCATGAGG
AAATGTATCTTTTAAAGGTCTCCTATCTCGAGGATTATTctgttaaaaat
aaaataatctagGGACTATCAGCCACATTTCCTcatgatttcatcaaaat
tatttgGTGGACCTCTCGAATAATTCTGCTTGCCTGGTTATTACACCACC
ACGTAACATTCTGTATGTCCACTGTctaaatagaaatagaaatgtccACG
ATAGAAACGATCTGACAAGTGATTAAAAACAATGTTACTCGAATCTttcg
aaatgaaaaaagagtgcttTATTTTGGTAACACAAAAACAAGGAGCCTAA
GTATGTACTCCTGTACTTCCAAGTTTGTTCGACTCGGGGATGATCCACGG
AGCAATCTCAAATCCAACCACTATCATTCCAGCATACAGATCCCATACAG
ATATGTTTGATTAATTTGTGTGTCTCACCACACCACTGTCCATTCTTCGA
CAAATTCATAAAACCATTCGTCAATCTTTGCCCATTTTACCAAAATAAAG
TCTTTATGTAACAAAAATAATCCAACATAAGCAGTGCTCCAGAGAAAGTT
TCTTGTAGTCATCTCCCTGCTCTTTCCCTTTATAAATTCGTATCTATTAA
TTTCTGGATAATTCTAGACAACTACATAGTGACTAGCCAttccaaaaact
ttttgaagagtgactcttcaaagttcaaagcacaaaataaataaaaacac
aacATTCTGCAACATTTCGAACTCTCTTGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNctttgtttacaaaaacacTCCTTCGCGGTGACAAATTTTATTG
GTAGAGTTTTTGCTGCAGTCAAAAGCTACGGTCCTTTGGCTTGAAGCCGA
GGATTTTGAATAAATGTAAAAAGTTACAGACGGaacggtgtcgaggaaaa
agccgtggtcgtctggtacaggctatGAATGTCTCTGCGGTGAAGCGTGT
AACTATTTTCAGCATtcttactctaggggctgagttaggtcccgtatgca
catcggcgtatagtcattttttcttttgatcatgaaagtatagtccttga
agagtcagaaaacgtgtgtggcgttatttggatcaggctcaaatttccat
aatgacggattttagatttcaaccctttttagccatcttgcttgaaaaaa
attttttttttaactttaaacatagacatattatataccaatcgattaCA
AATGTTATGCCAattaagaaaaatgtcagaacGATGATtagaaaatttcg
ttatctggagatatgaagcactttcgattttgattttttgaaatgactac
ttttggttccaaatttgcggggctgtaacatttgattagCTTACttgatt
tatttgaaattttcggagggtctttcctaccgttcaaataataaaattca
ggaaaatttatttttctacatgaatttcgaaatccataatggcggattca
aaattttctttcgtcacatgagctcttaggctctgctagcctaagaaaaa
tattttttgagcttaaaaccctgcatataatataacacacacaaactttt
ctactcaatcgcatgttcaaactcgatactttaattagggacaccctgta
tagcaaaagaaattcttgacgtaatgatattaaattggttcttgtaaact
GTCAGAAGtggagtaaaatcaagatgaacttataattttctcgagctcta
gctttccatattatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
ctcgacataaactcccttaagggcaagagacctggtatatgacgagccgt
ttttccattgttttcaaaaagctgtttttccatctctttacattcctctg
aatatactgttctttggaagagactaaaaatggctaggtcgtaaaaaagg
tgtcacggaaccccaggcttggccctcTACTAAATAAAAGAcgcataata
ttttgcttggccggcattgagtaacttTGTCCACTGATATATAAATGTCA
TTGGGACCAACTGAGACACAGAATCTCGCttactttcaaaatattaaaat
agcCCGTGGTGGGCGGGCTGGTACAGGCCACCACAGCTgagacatttgaa
aacttgtggaTGACGGGAATTCCGTTTTCACAACCTATAAAAACCACGCA
AATCTTTAGTTGAAATTTAATCTAAGTGCGTGGCAATCTTTCATTGGCTG
CACTTCATTCATCATCATAAATGCAGAAACGATAAAAAGTGACAttttaa
aggcttggggacacgagaaatGTTTTTCGCGTTGGAACAATGGAACATGC
TCCATTTAATAGTCGTAGATACATCATTATGTATCTGATTCACCTTTTTA
TCTGTTGAATGTTTATGCCGTCTCTTACCAAGCcgtcttaaaattttctt
tcgttttgTCTACAGGTCGAGACCTACTTCATTTGAGAAGAGCTGATGGG
AAGACACCACTTGATATTTGCCGAGAACCGTCGGCGATGAAaaccttgtt
gaaaagatatgagAATGTGGAGTCATCTTCTGACTATACTAACGTCTCAA
TTGTTGCAAATCAACAGGTTGCTGTGAGTAGCATAAATAAAGAAATGTAC
CAGAGTTTCGTTTCACCTGAACCTCAGAATATGGAATTCTTTTTACAAAT
ACTTTTGCAACTTATTACCAGTTACCGGGAATCGAACATAGACGGCTTAA
GATGCAATTTGAGCCAACTTGAAGCANATATGGAATTCTTTTTACAAATA
CTTTTGCAACTTATTACCAATTACCGGGACTCGAACATAGACGGCTTAAG
ATGCAATTCGAGCCAACTTGAAGCCCAATACAATGATTTATTGATGCATG
TCAAATTACTGAATGGGGATAAGATACCCCTCAAATGCAAACTGACTTTG
AAACAAATTAAACGCGTTTTGTTTAGCTAAGAGAGAAGTATTACATATGA
TTTTGTTACTGAAGGGTTTTATTCATTCATATTTCAGAGGTCAATACGGG
GATTTGTTAACAGCAGTTTGACAATTATTGTAATGCTCGTctcttttagt
tttttaaagagGAATTTTCACTCTTTTATATACGCCATATCGACCTACAG
TTTATGAAATTAGATGCTACGACCCAAAGACTATGGAGTCGATTCATTAC
TATGTAGTCAGATTACTCTGACGTCTTTTATTCAACCCAAGGAAATTTTT
TCTGTCATAATGGTAGGtattcttcattcttctgtCTGCCTCTCTCATCA
CCCCCCCCTCCGTCCATTCTCTTTTTCACCCTTCCCCCTTTTTCTCCGAC
GTGAAGAGATGTTTATACggtcttaaaggttttgtttttaaatagagTGA
TATCGGTTGCTTactcacaagctttttcatattggattgacacagatgtg
gagaaagattggtcagaaagaggaaaatgaaaatatttttttgcttatat
cagcatgatATAACAAGAGGCAGACACATGTCCTGGTATGataatgtgtc
tgatatgaaacgggaacgcttatataaaaacaaaacctttaagatatTAG
CTTTAAATATAGTAGTGATATCAGTGATAAAGGCAACGGCTTAACCGATA
GATATTTAAAGGTAACAGACCTTTCatgaattattttgagtgcaacgact
gcctcgttttgaaaccatggTGAGACTTCAAGTGTTGCTTTTTAAATAGA
GTGAATTTCGAGGTAAGGATTGTTCATGCCTTAATACAAGAAAAGGTGTA
cataagaaatatttgaaagcAAACCTGATTAAATTAGGTCGGAAATTTTC
ATTAGATATTGAAGATTCTTTGTGTAAGTTTTTTCACTGTATACATTTTT
GAGTGATTTTCAATCCATCAAAGTTTTTATGGGAATTGGACTTGAGGTGG
GGTCATGGTATGATTTATGAGATATATTTATTGTAGTGGTATttacaggg
ggggggtcagtagtaaaatctcagacataatgacgtttactacggtggtg
gtgtgacaaaaaatctaaaaaattttttactacctagggtagttaaatac
taaaataggtggtatctatgtgttaaatgttgaaaaaattttactacctg
ggtagttaaaactggtaaaattagc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028450TCONS_00028450Clytia hemisphaericatranscript
TCONS_00028451TCONS_00028451Clytia hemisphaericatranscript
TCONS_00028452TCONS_00028452Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028450-proteinTCONS_00028450-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000681supercontigsc0000681:2617..13191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.25	2.75	1.29	0.75	7	4.65	4.54	5.26	4.62	4.73	5.17	3.2	3.77	4.51	3.12	2.66	3.47	3.29	2.44	2.82	4.76	5.17	4.94	5.77	4.76	5.01	1.82	1.55	3.27	4.31