XLOC_016392 (gene) - C. hemisphaerica

Overview
NameXLOC_016392
Unique NameXLOC_016392
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000714:29670..33519+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016392 ID=XLOC_016392|Name=XLOC_016392|organism=Clytia hemisphaerica|type=gene|length=3850bp|location=Sequence derived from alignment at sc0000714:29670..33519+ (Clytia hemisphaerica)
CTTTGATAAAAGTTGACAGATACTTCTGTCCAAATATACAATATGATACC
GTTATTGAGACTGTGAAATttaataattaaaaaagttgttttgtGACAAC
ACTGGCTATACTACGTCCTCTAATCGAatctaattaattaatttttgaca
AGTGTTTACTCTTTCTTGTTGGTGTTGCCAAAATATCATAGGCTACTGTT
CAAATAAACCATAAGGTGGTTCATTAATCCCGTCCACTGTACAACAGTAT
AAAAGGGCGTCGTTGGACCAAAAAGATCACTCATCATTTTGAAGAGAGAA
CAATCAGTGCGATTGCCTTTGCCAAAATGAAGTATTTTATCGCTGTTTTA
TACCTTGCTTACATTGCAACTGCTTCGGCAGATAAggtatgtattttttt
caatttgttgaTGTTTTCAAGTGAAAAACCTGCTAGAAATATGAAAAGTA
TAGCTAGAAATTTGTAAACTGTAATCAGAATCCATTCTTCTTTATGTATT
GTCTTAACAGCGATGCCTGATTTGTTCGTCGTTGCTCATATCTTTCAATA
TTCATAATTTATCCATAATATCTTTCCACTAGTGCACCGATGTTTACGAC
TCCTGTGTCAACGCCACCGGTAGCGACCCCATGTCACGATTCAAATGTGG
AATGAAATATTTGAGATGTCGATTCAATGACATGAGAAGTGATGAAGAGA
TTGCTGATGAACTTTTTGACGGAGAAGACAAACCTGAAGTAGATTTTACC
TCTTACTCTGTTGCTTTTAATAAAGTTTTAAGGTTTCCAGGACAAAAAAG
CCTTATAGAATTCGTCCTTAGTGAATAAATCTTTATTAGTACTTGCTACT
GCTACTGttgaaaaaaggtaaaattaGGGCGGCGTCAAATACAAGCAATT
TAGACTGGAATGGTATAAATCTTTTATTTCGATTTGTAAATTANAGGCAT
CAAGTACAAACAATTTAGACTGGAATGgtatgaattttttattttgattt
gtaaATGGTCTTTTCATTATAGTGTAAAGTTGGGTTCGTCGATTGCATGA
AAGCCGCTCAAAAAGCAGAAGACAAAATGGCAGCCAGAAAAATGtgcatc
aaaaataaatatgtttgCGCCAAAGAAAATGCCAAGGAAAAATATGCCTG
TCTTAAGAAGGTAATGAAGACAACCTACATTACCTAAATACGTAAAATCA
ACATCTAGTAAGCCTAAAAATCTTTGCAAACGTTATGTGTTAACTTGAGA
TAAAGATATTGAGTTTTCCTAACTTAAATTTTACTATGCTTAAATGTAga
ttttaaaagtcaaatacCTCGTTGCAATTTTCTTTGAGACAATGAACAGT
TTTACAcgcctgtctcacagccccggtggaactttttcccacagtgggga
taaaaatttatatcgaataatcccaatggggatagataTTCCATTGTTCC
CGAGCTTAAAGCTaatttttctattgaatttcgaatggggatgaaatcaa
agtcaattttccagtggagctGAAATTGTATGGTATTTATTCCTCCAGGA
Accaaattttgggcaaatttttcagtggggctggggtcccagcgggtctg
tgacacgggtgtattttaaattttttgatttatgatcAGTGCAAAGATGT
TGACGGAATGAAAGAAAAGATGAGATGCGCTGCTAAATGTttcaagaaag
aagaagaagaagaagccgCTGATGAACTTTTTGATGAAGGAGACAAAGTA
TGTTTTGAATATCTTACCAAACGAGTTTTATGTTTGAAACTATCAGCGGC
AGAAGAATACGACCGATAAAGTAGACTGACTTTAATATTGTTAATACTTT
TTCCAAATTGAGGTATCAGCTTTCTATCAAAGTTTGTTTTTCAATACTCA
TAATTTATCCCTGATATCTTTCCGGTAGTGCACCGATGTTTACAACTCAT
GTGTCAAAGCCACCGGTAGCGACCCCATGTCACGATTCAAATGTGGAATG
AAATATTTGAGATGTCGATTCAATGACATGAGAAGTGATGAAGAAATTGC
TGATGAACTTTTTGATGGAGAAGACAAGCCTGAAGTAGGACTCATTTTCG
TAATTTGTGCCCTTTAGTAAAGATTTAAGGTTTCCAGGACAAAAAGACCT
TATAGAAATCATCCCTAGTGAATAAATCTGCTTGCCTATTAGTGCAACGC
ATTTTTACATTTGATTCATTTTGAAACACAGTCGAGGATATAAATCTTTA
TTAGTACTTGCTACTGCTACTGttgaaaaaaggtaaaattaGGGCGTCAA
GTACATGCAATTTAGACTGGAATGGTATAACtttttgccccgcaggggct
tttgttcggatttgctcgccagaaaaatattcatgttcagattcatgttg
tttcttccGATTCTGAGCGGCCCGCCGCGGTTAAAAATGTTCGCGCGCAC
CTAATATTATATCTCTTTTGTTGCTACTTGGTACTtattataagaatcaa
atcaataactcttgattgaaaaccatatacctttcggtaattagttctta
caaagtaaacaaaggatggcaaaaaaattgagcatatttatttttattat
aagcattttctttataagaatcaaatcaatatctcttgattgaaggcaat
atgcctttcggtaattagttcttacaaagtaaacaaagtatggcgaaaaa
aattagcatatttatttttattataagcatctactttataagaatcaaat
caataacccttgattgaaggcaatatgccttcggtaattagttcttacaa
agtaaacaaaggatggcgaaaaagatgagcatatttatttttattataag
cattttctttataagaatcaaatcaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtttataagaatcaaatcaatttcagaatttttggcgttttcactg
tgataacatgtgagcgataacttctctttttgagatgtgagcgaccgtct
atcccgtgtcatctcaaaagtaaatttgaaaccaagctttcttcctgcga
cttaaattttatcgataaaacgaatttaaaatctacacatgcgaTGCGTT
ATTTTGCTTAGGGATTTTCGAaaggaagctctgcggggcattcttagcga
cagctacttgctagtttatTTTGAGTTGTAAATGGTCTTTTCATTATAGT
GTAAAGTTGGGTTCGTCGATTGCATGAAAGCCGCCAGAAATGCAGAAGAC
AAAATGGCAGCCTCAAAAGTGTGCTTCGAAAAGAAAGCTGCATGCATCAA
GGACAAACTTCAACCAAAGATCGACTGCGTTAATAAAGTAAAtcaatatt
attttatttacatCCCAAAAAAATAAACCGCCGTCCATTCTTAGATTTGT
GCAAAATTAAGTATTTCTTGATCCtgtaaaattattcttattctGTAGAT
CGAGATACAGTCTAAATCAATTGGTTCAATTTACAATTGgaaattttcct
tgtttttacaTATTGATACTCTACTCTCTTTTATTTTAGTGCCGTGAAGA
GCTTAAATCTTGCAGAGCTGATGGATCAAGCAGAATGCAATGTGGATACA
AATTCTACAAGTGTGTCAAGCCATGCAAAGACGCATAAATCCCTTGCAAA
ACCTCTACAAAGATGAACAACTTTAGtttttttatcgaaattttaagttt
ttaccTTTGTAGATTcgtttaacggaaaaatatttacttCAACATAAAAA
ACTTGAGTTTTATTTTTAGTGATCTGATATTGACTGAAGATAAAATAGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00028874TCONS_00028874Clytia hemisphaericatranscript
TCONS_00028875TCONS_00028875Clytia hemisphaericatranscript
TCONS_00028876TCONS_00028876Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00028874-proteinTCONS_00028874-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000714supercontigsc0000714:29670..33519 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.03	0.2	0.13	0.09	0.23	0.19	0.22	959.47	667.38	7.46	2.48	1.64	1.2	2652.61	2213.05	6.38	6.3	21.49	38.58	398.17	453.04	0	0	0	0