XLOC_016517 (gene) - C. hemisphaerica

Overview
NameXLOC_016517
Unique NameXLOC_016517
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000723:100141..110314+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016517 ID=XLOC_016517|Name=XLOC_016517|organism=Clytia hemisphaerica|type=gene|length=10174bp|location=Sequence derived from alignment at sc0000723:100141..110314+ (Clytia hemisphaerica)
CACGTTTTATGTTTTGGTTTGACTCGAATCATCGAGACAGTGGCGGGAAA
GTACGCACGCGTTGTTTAGCTTTTGGACAACAGCAAAAGAATAGAGACTC
AACAGAGATGAAAGGTAAAGGTTTTAAAGAATgggaagttttcaaaaaaa
gaggTGAGAGCAAAAGAGGAACTCGAGCATCTTTGAAATGTCTTTATAAG
ACGTCTTTTCTTATGAGCTCTTATGGAGACCTATTTTTTCAGAtgtaatt
aatcgaaccaatcgtaTAACTGTACAAATCGTATATGTACGGATAATGGG
TCCTAGGACCTTTtagtatgaaatatatagatagatagatttcagtattt
ttaatcgaactttgtcaaacttaatcgaaccttATTGTCCGATTAGTACT
CGACTAAGTTGAGTCGTCCAACTTAAATCAAATACTCGCAAATTCTTTAG
AATatgaagttcgattaaaaaaatagaCCTTAATAACTCTATTAGTTTTA
TTACATTAACTCACATAGTTCgcaccccccccctttataaagggggggta
GCGATGTTCAGAAAATCTCAGAAAggggggggtaagagaattttttCTAG
AAAGGGGGAAGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGTATGTTT
GAAACATTCGATTCAAAATGATTCTATTTTTTTCGCAATGCAGTGtgttc
tattttcttttgtttagaattttgaggggggtagcatcaaattttaaaag
ggggaagaacctagggtagggggtagctctagggtaaggggggtagtgac
ccccttccgaactatgACCAGGTGAGTTAAGGAACCATGCAACcctattt
cccgattttcccaCCACTTCCCCTACTTTACTCTCACATATCTgcatata
gctcaaaagaagcatATAAATGAGATGGTTACAGAAAGTGCTgggttgaa
aatttaaatttggccgATTTCAAGATATCaaccaaaaactgcctaaacaC
ATCATAGGAAAGATTCAAAGGAAAGGAGgggacgtcattattgaaaaacg
gcaATAACTAACTTCAAAtctattaatgcaatcaacaccaaattttgact
gcaGACGTCGAATAACAATTCTGAAGTATTTGTTgaagaatttctaaatt
tttggatgacgtcattttattgTCGGTAATAATTGAAATATATatacgtc
aaaaaatgatgatgtttttttttcatgaaatatttcagaattaataatca
atgttttcattcaaaaaaatgttgTCGAACTTTGTGGAAGGGAACTTATT
CGTCGAATTTGTTGTACTATCTAACATTTTTTTGTCGTCAAACTTTAACT
ACAAACTTTGTCTAACGGAGTTTTTTGCTgaatttgtcaaacatttcttg
TTGTCGCACTTGTTGGAACTTTGTCAAAGTTAATATGTTTTGTTGAACTT
AATCCAATACTCccaatttcagtgaaaaatttgattaaataaTTTAATCA
GACTGTtgtcgttcgattaagtttgacaaagttcgattcGTTCAGTAATC
AAACTGTTCAATTAATTACATCTGGATTTTTAGAAGTGCTCTTTAACCTG
CCTCCCCTCTTGATGGCATGATTAAGAATGAGTCTTTTGGATTTATGAAT
GTTTATTTCAAATGGTTATGGTCAAATTGTtacgtttttgccaaaatagt
aaaaaaaaatggcCCAGACGTTTTTTGATGGTCTTTGCCCTGGTTTTTCA
GCACTGGGAAAAGGTTTATTCTAGGTATTCTAGGGCTTCCTCTGACATGT
CAAACAAAgatgtgtgatttgaaatgtttttcttgTGGAAAAAAATAATG
TATTTGCTAAGATTTCAATtagatttcaattatttttggtaattttggtt
aattcttcTTATATTTGACAATGTCTGTGCAGAACCACTTGCCCTCCAAA
AATTTgctaaaaaagtctgaaaatcctttttaagaagtctgctagccaaa
attgatatttttaaattttgcctgtaatgtGCTGGCTGGGCATACCCCAA
ACTCCAACCATGAcagccaaaaattgaaaaataaaaattttggctaatag
actttttttaacgaattttcaaacgttttcgtaatgatattttatgttca
ctggagggtcttctttccaaaaacctgatatatttattttcagatataag
ttgtgacctttttctttatcagtttttcatgttctttcgaatagaacaaa
tttttcaattttgacaactttttactttggttacgtcagtttccatggca
acgggtgCCTCACTGCCTCacctttcaaattttgatattttacatTCAAG
TATataacaatattcaatcataaaatccctatGCTCAAGCTGCTGCATAC
GGGAAGACACAGGCCTCTACTATCAGGCCAAAAGCTGCAGATaaaaggtt
ctctaaaaagtggctgagtgatttttttccaatcttAATGGCCTTGTAAT
CTGTTGTAATATGCATTTTTGCTTTTCAGGGAAATACCCTATCNAAATGA
TAGTTATAAcaattttctacaagatcttcatttttttcttcttcattttc
atcttcatttttaaaatttttttaaagattttttttattttaaattgttc
cactcactaatatctttccaatgataccaaatctataaagattaaagtat
tccttcaaaagttataggtaaaagaaaaaagagtgcacacttattgtGAA
TATACTTTAGTCAGTATATTTTCCTTCTATTGTATTGCAGAACACCTCTC
CCAATTCTAACAGCCTTATTCTCACTCCTTGACAAGATGACCTGTAAAAA
AGATCCAACACTGTTTCATTGTTTCTATCGTTTTTCAATATATATATTGT
TTCTatcgaaatttgaaatttaaattacagattgaaaattgaaacattta
aaTTATAGGTCTCCAATAATGGTGGATGCGTGATATCCAGTTTTTGAATA
TCAAAACTCAAATTATTTTGGATTACCGTATTCCATCTAAAGCATATTAA
GCCCCCCTCcaaaaaaaaatgtacaaagggTTAAGATTGGATAAATGGTC
AGAACGATTTTATACCAGCTTGTACCTGTAAAGGTACAACTATACCAACT
CATGTCCATGTTTGAGGGAGTAGCCTCATATTAGGTTATAATAATAGCCG
TACAAGTTTTTCTCTGTATCGTTGTGATTTTCCTTGGTGATTTTAGCTTG
TCATATATATTTTTCTGgtcttttttttacctttttcataCCTTTCTCAG
TCTTTAACTATTCTCATTTCTTGATCAAGACACCCTGAATAGTGTCCAGC
AAAATAAAACATGGACAAAAAACAATAGAGAAGTGATAGCATTCCTTNTT
TCTGATTTTGTTTTACATAAGCTGCTAGGCTTATGACATAGGAAAGCAGA
CTGATCGATGTTCCAAAAACAGACATGAGAAACTGGGCCTTTGTTAGATT
TTGGTGCCAATGGGNCGAGTGATTGATATAATTACAGAAATTTAATAAtc
aattttggtaaaattaagaTAGTTTTTTACAGAATTGTTTCGTTCTCAAT
CATTCAATCAGCAAATTAACTAAAGGTTAAATTTAAGGGCATCAGTCGAA
CTAACTAAAGGTTAAATTTAAGGGCATCAATCGAACTAATTAAAGGGTAA
ATTTAAGGCCACCAGCCGGGATGTTTGTTGGACAAAAACTCGATTTTAAA
TTGATTAACAAGTATACAGTAGTTATAGTTTTCAACCTAATTATATAGTA
TATATATATTTAAGCCTATTACTTATACCATCTTCCAATAGATTATATGC
ACAGTTAATTGAAAAGNGTCTAGTTTATTGTCGTTCAGAATGTCACACAT
ACAATTTGAATAATATTTTATCTCTTTCATTGACTGGACAATTGAATTGC
TGCAAAGTCCAGAATCAGTTATTCTAGTGGATGTCAACCCATACAGATCC
GAATAATGAAATCTCCCAGTTGTAACAACTAGTTTTACTTTAGATGGCGT
tgacaagaacattttaatttcTGATTCGTTTAATGATACTTTGTAAACAA
GGGAAGAATCATTATTATAGATTGgtgttttattttggaaaacaCTCAAA
TAATTATTGATAGGATAATTGTTCTTCTGCTCGATTACATAGGCCATAGA
ATTACATGTACCACCACAACTTCTGCTGTATTGAACTGTTGGTACTCTTT
NAATACTGGAAAAGTAACATAAAAGTGCAGGTATGAAATAAAGATAAACT
TGTGATTCTTCTTTCCCTATCCAGCATGTTTCAATGCCATATTGAAAATC
GATAATATTGNGGATAATTGTTCTTCTGCTCGATTACATAGGCCATAGAA
TTACAAGTACCACCACAACTTCTGCTGTATTGAACTGTTGGTACTCTTTT
TGGGACACACCTTCCATCAATCAAGTCATATCCATCAGCGCATTTCACNG
TATTCGTCAAAAATAATGATACTTGCTATGAGACTTGTTGTTAAACACAA
ACAAAATAGTAATCGATTTCTTGCtttgctttttatttctttttctgaCG
ATACCTCAATTTTAAATGAAGACAGAGACTTTGTAATACTGAATCCCATA
TACATGGTCCACAAGCAAACATTGAGCAAACTCCAATGCAGTCCTAAACC
AAGCCATTTGCACGCTGAAGTTTGCAAATCCACCAGAACTGATGCCAAGA
AAATCATATCTGAAGCTAGTNGATGCTCCTCGGTACATGTTTTCACTACA
AACACGACAAAACAGATTTTTGAAGTAGTAACCATACGCTGTCGTTAAAT
TGGCAAAAAAGTGATGACAGAACATTGCCAGGGTTCTATCACATTTTTCA
GTGTTACAATTCATGTTGTATTGTCGACCTNGAGCAACCAAATCAAGGTA
TTGGTGTTTACAAGACCTGAGGTTGATCTGGTCTGATTTTGTTTTACATA
AGCTGCTAGGCTTATGACATAGGAAAGCAGACTGATCGATGTTCCAAAAA
CAGACATGAGAAACTGGGCCTTTGTTAGATTTTGGNcattttgacatttt
gtaaCAGTTTGTCTGTATATCTTTCCAAAGGTATTGGATTTTCATAATCC
CATAGATAGTCAATACAACAATTACCATCTACTGGACATTGCTNTTCAGG
AACATTAAATGCATCGCACGTGTAGTTAAATGCAACGTCTTTAAAAGTGG
AAATATTGTAACATTTGGCACAAAACTTATTTCTGTACGCATAACCATCT
GCCCCAATGACCGGCATGGTAAGATCACCATCATTAATGGTGAACTCGTT
TCCCTGGCATTTAGAGATTAGCCAAATGTCTTTACTTTCCTTTGGGCATC
TATCAACTAGAATTAAATCAACACGGTGTATAAGCGTGTAGCATGATAGT
TGTCTTTTGACATTTTCTAACAGTTTGTCTGTATATCTTTCCAAAGGTAT
TGGATTTTCATAATCCCATAGATAGTCAATACAACAATTACCATCTACTG
GACATTGCTTGATATCACAGCTACATTGTTTTGATGACACGTCACAAAGG
TTTCCTAAGAAAGGTTCAATATTTATGTTAAGGGTTTTTTTCCATAATGT
TTTGACGAACTCTTCTAGAGGGAACACATGATTTGTACCAGAAACAAAAT
CAATGTGTAAACCCAAAAGTATTAGTGTAAGACCTGTCAAAAACATAGTG
TCGAGCTCTGAAGTTGAGAATGTTAAAATATTCATAACTTTTATAGGTAA
TTACTGAAAGAGATTTAGATCTTAAATCGTTCCTCGGGCTAAGCCTTGTT
GTTCTGATTTGTGGTGGCGTTCTAAGAATTCAgaaaatcgataaaataaa
GCATCTATAACGAACCCTAAATTGAAAAACCCTGAATCTTGATCTTCTTC
ATTGATTTACTAGAAAAAAGCAGGAAGCAAGTAATTACAAGAGAAAGCTT
TTTATCTTCTTGTTATTATTACCTTCAGCCCACCACGGAAATCTCATTAG
AAGGTTAATCTTACCTTTGTTATTATTACCTTTAGCCCACCACAATATCT
CATTAGAAGGTTAATCTTACCTTCGTTATTATTACCTTTAGCCCACCACG
AAAATCTCATTAGTAGGTTAATCTTACCTTTTTTATTATTCACAAAAATC
TCATTAGAAGGTTAAAAATCTTACCTTTGTTATTATTACCTTTAGCCAAC
CACGAANAATGCTCCTCGGTACATGTTTTCACTACAAACACGACAAAACA
GATTTTTGAAATAGTAACCATACTCTGTCGTTAAATTGGCAAAAAAGTGA
TGACAGAACATTGCCAGGGTTCTATCACATTTTTCAGTGTTACAATTCAT
GTTGTATTGTCGACCTAACGATAAATTAATGTTACACCTTTGACCATTTT
TGATGATGTGCTCAACATAGTCTATTGAAACGTTGCTAATATCAATACTG
TCAGNCTAACTGTAATTAGAATAAAAGGGACTCACTTCAATGGAAGATCT
GGGCTAATTCCTCTTATAGTATCTTCAAATCCAAAGTAGAAAGAAACCTT
CAAACCTCTTGTTCATTGGAATGATGGAAACGTACAATGTTTTGAAGACC
GAAAGAAAGTTAAGGTTTCTTATCTTTTGCTGATAGGAAGGATGCTAATT
AGggttggatcacgagatttacgtttggcgtgatccaagccacgataaac
caatatgaatatcactgggtcgataaacTTAAACTTATTTAGATAATAAT
TAGGGTTGTTTCTTTCTGATTAACCCCCTTGAAATGGTTCGTTATACACT
GTTAAAAAATACTACATAATTTGAATGATGatgttttgtaattttaaaCC
TTTTGAACCATGAATTCACAAATCACTTAAAAAATATATGTATAGgtatt
aactttttttaaatatcctcTTTGAGAATGTCATACTTTCTTAATCTTTT
GATGAGCCGTATTCGTATTCGCTACCCATTCCGCTCAAATGTCTTAAGAT
ATATCTTTTAAATTGAgtctacaatcagtgccgaaatatattggcaattt
tgggtattttaacgttttcagAATTTGTATATTATATTTTACAGCAATAG
AATTCTTGCACCACTCTTCGGATTGCACATTTGTttaatttcaaagataa
aatACCTTTAAGGTTTCGTGCTTGGATTGTGTATGGAATACATTGTACAA
ATTGCAATTCCTTTTACGTGGGTAAGNTGATTGTGTATGGAATGTATTGC
ACAAAATTGCAATTCCTTTTACGTGGATAAGACCAAAAGACATGTCGCCA
CCAGATATAAAGAACATTGCAACCCCGAGAAACCCTCTGCGGTTACAACT
CACATAATGactgaaaatcatgatttttccATAGAAAGAATGAAAGTTTT
ACATAATAGTAATTATCGGCTCGATGAAGAGCTTTATATAAAAGAAACGC
TGATCATAAGTGAGCTCAAACCGGACTTGAATGAGCACGTCTCTTCATTC
CCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGCTCTTTTAAGATGTATGCGTTCCTTTGTGAAATTT
AACAACTTGTAGTAAttatgaataaaattaaatttctagttttcactttt
tttatcaaatagaatttcataatttttatatttttttatcttgtAAATAC
TGTAACATTGTGTTAAAAGCGAAAAAACGTGTTTGATCTTATAGTAATTC
ATGATTCCAGTAGGCCATATTTCTTCCTTATGCTTtattcaatgttttct
tttctacCTTTTCAATAGATCAACTATTAGACAATTCAAAATGCCAACAG
TTTTCGTTGGTTTCAATACAATTACACATCTTCCATCTCCACCAGATGAC
CCTTCCACAGATGAACGTGGTGAATACGATGTAAAATTTGTTTACGGTGA
ACCGAGTCATTCGACATGTTGTATTTGTTTATCCATTCTGAGAAATCCGA
TGCAAGGTCGTGAATGTGGACATTCTGTAAATCATGTGTTACTCAGTTGA
CCAAATTCTGAGATTAACATATTATTtgtgaaaaaaacaaccttgtcttt
tttgctaaaatacATTTCGCTTTTAATTGACATATTAGTGACATATGGAT
GAGGAATTTTATCAGTTTATTATCTTACACTGGGAGCCGATCGCAACTTT
TGCAGAAATGTGtacagttttttataagaaccagcaaatttttgttgagg
ctctGCTGTTCTTTTTTAACACCTTTAGCCtcgaattgttcttatcctgt
tctaattattttgggaaaattcaGGTTATTCCTGGTTCAATACGCTATTT
CGACCTTTTATAACCCTTAACTTGCCCAGGATTCAATCATTCAAGGTTGC
TGATGGTTGTTCTTAGATTGTTCCCATTTTACGGTATTTTAGAggctcat
tgttcttataaaattgttccgataaaaaagagtgtatgcaAAATTGGTCC
CTCTTCAAAAGAAGGATAGACTAATACTAATAATTTTTGCTTTGTTACAG
AGGAAACGGAAAAATTCAATGTCCTGAAGATCGTAAAAGTATTGAGGTTA
GTTTGATGTTGATTTATGTTAGAATTGTTCAAGCATGATAGTACAAAATT
ATTCCTAAAATTCGAATTATTCTGGAAATATTTTCATGCCCATTCGTCTT
TTCATACAACAAACGATTTGATATCCACAATATTTTCTATATTGCAAATA
ATGtgattttttgacaattttcatcggtaaaatcaattctttttaaccat
ttcatattttcatctttagttATTCGAGGATCTTGGCAAGGAACGAGAGA
TTCTTGATAGCACAgtgaaatgcaaaaatgaaaaacataaaTGTCAATGG
ACTGGTTCGTTACGACAACTTGACGTGAGCATTATAGAAGGGCTAAAAGG
gatatttattaatttttaattttcagattgCTTGAATGAGACATGAAACT
GtcagtattgaaaaaataattttcattgctTCAACTATGATAATTTTCAA
ATATATGTTACAGGTTATTCTGAGAAGAGCACTCActtactattttgaaa
atagtttttatCCCTTTAATGAATTGGTTTTCCCTGAAAGTTTTTTAATC
TAGGGACACTGGGTGTCTATTCaaacttgaaaatgaaccatTACTTCCAA
TCTTGAGGACCTTGAAAAGAATCTTCCTAGCATGTGTTTGTCTTGCATAG
ACTGGGGTTTTCACAGATTTGTGACTGTGTTTTACCTACAGATTTTTTCG
AGCTCACTTCACTTGCAAtaacatttattttgttttttgttgtttgtaga
CTCACTTGAAGAAATGTGATTTCGAGATGAAGAAATGTACTAATGCAAAC
TGTACGAAACTGATTATTCGGAAGAATGTGTCCAAACATGCACTTTACCA
ATGTGATCGAAGCATTCGATGTCAATCGTGCTCACTACTTTATTATCGAG
CCGATCCacttttggtaaattttcatcattattttttttgttgtaGCATA
GCCAAGACGGAAGAGGGGCGCGAAATATATTTCTAGGACATTGTAATCAT
TTCTTCATAAtataaaaggaaaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00029045TCONS_00029045Clytia hemisphaericatranscript
TCONS_00029046TCONS_00029046Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00029046-proteinTCONS_00029046-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000723supercontigsc0000723:100141..110314 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.06	14.94	4.31	0.75	2.18	1.87	2.78	4.4	2.29	1.42	1.65	1.09	1.45	2.35	1.54	2.31	1.53	2.09	0.58	0.76	2.1	1.73	5.92	4.68	4.2	7.47	0.19	0.2	2.26	1.84