XLOC_026726 (gene) - C. hemisphaerica

Overview
NameXLOC_026726
Unique NameXLOC_026726
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0003817:2..9439+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_026726 ID=XLOC_026726|Name=XLOC_026726|organism=Clytia hemisphaerica|type=gene|length=9438bp|location=Sequence derived from alignment at sc0003817:2..9439+ (Clytia hemisphaerica)
CGACCTGATGACTGCTAGTTTTTCAACATCAACTCCGATCACAAAAATCG
CCTCCCAAATCAATATAATGTCTTCActtcaagaatattttgaattcaCT
TGTGTGCTGGGGTGCGGTATCAAAGGAGTGGAGATGACTGGCAATAAAGA
GGACTGGAAATCCCTTATAACAAAAATTGACAAACTTACGGAATTGCTAA
GCCCACTAGAAGACGTCTTGAAGCTTTCAGGTTGGTTGAAAGTTGTTCGT
GGTGTGTATGAGAAGCTACTGGTAACTTTCGAAGGAACGCCAGACAAGAA
TTGGTGGAGCAAAATCATTTCCAAAGTTCCATTTGGATCAGGTAGTCAAA
AGCAATATGAAGGTTGGATCGTACAGTTTCTAGAAGGTAAGACAGAACAA
AAGGAGGGAAGATAAGATGTATAGATCCCCTTTTGGGATTTTGCTGGCCA
GAGTATCAGGTGTGATACAAAAGCCTCTGTTTAACCTTGGTTAATGGCTC
TAATGTGATNTACAGAAGAAAAGGAGGGAAGATAAGATGTATGTATCCCC
TTTTGGGATTTTGCTGGCCAGAGTATCAGGCGTGATACAAAAGCCTCTGT
TTAACCTTGGTTAATGGCTCTAATGTGATATATTAACTCTTATACATTTC
ATTTAGATGAGGCACAGGATTTTATTTGTACATCTTTCTTTGCAGGTAAA
CCCAGTGTCCAAACATTATCAGCTATGCAAAGTTCCATAACAAGCGTACC
GATGAAAATAACGTACGACCAAAATTGTGAAGGAGAACAAAGTGCTATTG
TTGCAGGTAAGTTTAGGAACAATGGCAGCCTAAATATGTATATCTGTAGA
GTTAAGTGAATTTTCGCCATGTTAAGTTGTATGATAACTGATGATGGCGC
aagccgaaaagctttttatccaattttcaaatatattttatatttcacaA
ATTATATCTGTAGACATTTTGATGTTTCTGGTTTAGCGTCTAAATCTTCC
TAAAGCGATTTGCATTCCATTATAAGAAGGCAGCACATGTATAATTTGAA
TCTACTAACCCCGGGTTTACAAGAATGGCGAAGCTGTAAAAATACAACGT
TCGAATTAACTCCaataaatttttaggtttttcATATGTTAGTTCGTCAA
AATAGCAAATTACAGATTGGATATCCGGTGTAGAGCAGTGGATATCAAAG
TCTCACTCGATAAATTGCTGTTCGTAAATTTTGAAGCAAGATTTTCTCAG
TATTAAATTAcgttattttgttattttgactGATTCTAATATTGTTTTAA
TCAGTTTTGGAATTTCGTGCAAACGAACTTCGATCGAAGGACGGATCTTA
AAAATAATTTCCGCGGAAACTGAGCTTACATATCGGGCTAATGAAAAACT
TGATAGAGTttaacaaaagatttttgttaATATTATATTATTTAAATATT
ATCCAGCTTTCGATACAATAGGCCTCAGAAAACCCTTTTTGCTACCAACT
ACCCAAAGAAGTAATTCTGGCCAATATGTCCCTTAATCGCGGGATAAGTT
GATGATAGAATTTTcttgaagaaaatataaaaagtgTTAATCTATTTCCA
GGACCAGTTGGATTTACAATCGAAGAAGGGAATAAAGATTCGAAAAATGT
TCCAACAATTCGACCGTACATTGGATGGGCTTTGTTGCTACCAAAGAATT
CAGGATTTAGATGAAACTAACTGAATTAATTAGCTTGACATTTTCTGCGA
ATAAAACCCTCTTTTTCTGTTGACAATTCGTTCAAATTTATTCTTTCTTC
GCTTAACTGAGCCACAATGCCTCAATTACTTCAGAAAAGCCCATCTTAAA
ATGCTTCATATTGGGTTTTAGAATGAAAGTTAATTGAATTTGAGAAACTT
AGGTAAGCCCGGAGCGAAGTGAACAGTGTGTTTAAATTTGCTCGAAAATT
TACGATATTTTCCGTTTACCGTCAATAATGGTTAAGCTCCGCGTATATAT
TTCCCCGTGTTTACGATGGCATTTTCTAGTTATTACTAATTATGTTTTTA
AGTATTCAATATCTAAATtcttttgtaaacataaattttaTATTGATATC
CAAATAACCATCGGACTTTCTTTTCGAAAACTTATGCACTCTTCATCGTT
TTTCTAGATTTGAGCACATTAAAGCCtaaaattcacaaaagaaaATCAGC
CTAGCCTTATTTACAATTTACTTTTTCTCATAAAAAGACGTGCTTACCCT
ATGCTTAAAGGTAGAGAGGCTAAAATTGTGGATAAATTAAGGAAGTGTTA
GTGTACGAGTGCAGGATGGAAATTGAGAGATGATATCTTCAAGGGTATTC
TGAGCACGTGGTCACATTCCACAGGCACGTGGTCTACTATTTCTCCTCGC
GTAATTATAGAAAGAAAGATAATGTTCCACGGTTTGCACACATGTTTCAC
TTCCTTGATAAGGCTACGTCACTCCTTCCTTCGTTTTGAGCGTGAAAaac
taaaagcctggagctgccTATTACTGCTAGACTGTTTTCTTGGTAATTCG
TATGAACAATATCTCCGAGCAGATTGTATCAGAGAATCCCGTTTACATCG
CACCTCTATTTATTTTTGACGGTATTTGATCACttgacggtgtgacggta
tCTATAAACCAgtctcttttcaaaatttagattgATTACCGTTTTCATAG
CACAAAACGTTTTTCTCTATTCTCAAGAAATCAAAGTATCTTGAAATGGA
TCTactttgtgaaaattttaacgGCATGAAGAGATAAAAGTTAATTGAcg
ttaaaaaatataaaatgcaGAATCATTGCTTTCTCAATGCTTTTATTTAC
GCAAAAGATAAATATCTATCTCCATGCGTTTTCTCTAATGATGTGTTATT
CATTTCATTTTGACATACTTCTAGGAAAATCTTCCAATCCGTTATAATTA
TCCAACCAAATTATAACACCAATTATATTTTAATTGGATAACAGCACGAA
GCGAAACTTATTCTTTATTGCCACGttttaatatattttctttctccacg
ttttctttttttggcaTATCCACCCTCTATTGTTTCTGAGTTTCTAACCA
TGGGTATAAAAGGAATGATGTTTCAATTGAAAAtatcatcaaacaacaaa
cagTTGATTTGAAGAGTAAAAAAACAGAACAGAAGATAATCATTTGGCTg
tttttataaatcaaaaaacaaagaagagAATTTTAACAGAATTTCAGATA
actaatttaaaaagttttattttcaataaaaggtGTCTACTGAAAATCTT
GTATCGAATCATGCAATTaacacaaaacaaaagcaaTAATATTCTATAAA
ACTTTAATTTACTGTGGTGTTAAAGATAAGAGTTAAGTATTGAGAGAATT
TATTAAtgagaaattttgatttagTGGAAATATATTAATCATATTTTCTA
ACCTTGAATGAACCTTCTAAAGAATGAAGTTACACCATTTATCATTAGTT
TTGGTATTCGGTTGTTTATTACAAGTTGAATCACAAAgtaagaatttaca
aaaaattcattattttgtcCAAGTAATGTCCATATATCTACTCAACAGGA
atttatttttacatcaaaaaaatcaatacaAGAATTGATATATTTGCATT
TTGTTCTCTTCTaggcccccccccagcggtttgcgtgaatgcgtgaatgc
gtgaatgggcattttcacttgcgtgattgcgtgaaaattgaaaaataatt
gcgtgaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatccacttt
ttgattgcgtgaatacgtgaatctgggctattttgtgcgtgaatacgtga
atttccCCTTATTTCCACCAATAATGGGTacttttcccgattttccaatg
tttccccgatttttcccaaaaatttcccgattttctgaaaaatcggatta
ttgcgtgaaactcgaggaaaatttgcgtgaatgcgtgaattttgaaaaaa
aattgcgtgattgcgtgaattgagggtccactgggggggcctcttttaTG
ATTTGGTTTTAAGGAAAGATACAAAATTTGTTATTTATGATATTAAAGCT
TTTGTATCTATAAATTAATCATGGTAGTTATTTGAGACAACACAATCTGG
TCAAAAGTAGACTCGAACCAAAGACAACCGTAACCATACCTCGACCTTAT
TATTCACGCTAACGCtttgcatgttttttttatgagaacatttatgacaa
aaattttgaagcctacAGAAGTacttaacttttcgagttgttgttttcac
caatttttgagtatttttgtccattttcctaagaaattggatgttCCAGG
GTCTACAgaagtgttcttaacttgctcttaacaaTTTGgtcctcgaagcc
ttatgttcttataaaaaaacgcgttCTCATCATAAATAAATGCTGCCATC
GGCTGTTTCTTAAAATAGAAATTCCCCTTCCAATGCTGATGATGCAATGA
TAACATTATAGAAAAGATTTTCAGCGTCTTTGAAGATAAAAATGTGATAA
CGTAGTAAGTACTTTTGAAATGTAATGGAAGCTAGACTTTCTAAGCAACC
GAATATAAATACTTTAAAGAAATAGAGTGCTGCTTGCGTTGAAACTATTG
CATTTTTTTGATAAGTAAAAACAAGATCCGTGTGCCATGAGAATCACACT
TTAGTCTTTCTttgaaatataagaaaaattcGTCTAAAATGACTTCTATT
TAAATTCTTAAAAGAcaatatatattttatacatTTCATGCACTTTGATA
CTCACATTACCTACATGGAATGTATTGCCACGATTTGTCGTCGAGTCGAC
CTCCATTCACTTGTTTAAACAAAACCTTAATGAAGCGTGGAAAAGACACA
AACTTAGATATTTAACAAATTAGAATTGTAATCAAACCGTTTCGTAGAGG
CCCACCTCAGGCCTGTGAACTTGTAtactgtataataataataattacca
TCAGCGGGCAAACGCACCCGGCCTACTACGGTACATGGTTGTGGGTAAGT
AGAGAAATCGAGGGAAAAGAACGGCTTCCTTATCATCAAGAAGATTTAGG
AAAAGGAAAACGTCAGGTCACCGTCAGGTTGACGGCGGTTGGAAGCTTAC
AAATTTACTGTAACTTTTATCTTTATAGAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAT
CCCTTATAACAAAAATTGACAAACTTACGGAATTGCTAAGCCCACTAGAA
GACGTCTTGAAGCTTTCAGGTTGGTTGAAAGTTGTTCGTGGTGTGTATGA
GAAGCTACTGGTAACTTTCGAAGGAACGCCAGACAAGAATTGGTGGAGCA
AAATCATTTCCAAAGTTCCATTTGGATCAGGTAGTCAAAAGCAATATGAA
GGTTGGATCGTACAGTTTCTAGAAGGTAAGACAGAACAAAAGGAGTGAAG
ATAAGATGTATGTATCCCCTTTTGGGATTTTGCTGGCCAGAGTATCAGGC
GTGATACAAAAGCCTCTGTTTAACCTTGGTTAATGGCTCTAATGTGATAT
ATTAACTCTTATACATTTCATTTAGATGAGGCACAGGATTTTATTTGTAC
ATCTTTCTTTGCAGGTAAACCCAGTGTCCAAACATTATCAGCTATGCAAA
GTTCCATAACAAGCGTACCGATGAAAATAACGTACGACCAAAATTGTGAA
GGAGAACAAAGTGCTCTTGTTGCAGGTAAGTTTAGGAACAATGGCAGCCT
AAATATGTATATCTGTAGAGTTAAGTGAATTTTCGCCATGTTAAGTTGTA
TGATAACTGATGATGGCGCaagccgaaaagctttttatccaattttcaaa
tatattttatatttcacaAATTATATCTGTAGACATTTTGATGTTTCTGG
TTTAGCGTCTAAATCTTCCTAAAGCGATTTGCATTCCATTATAAGAAGGC
AGCACATGTATAATTTGAATCTACTAACCCCGGGTTTACAAGAATGGCGA
AGCTGTAAAAATACAACGTTCGAATTAACTCCaataaatttttaggtttt
tcATATGTTAGTTCGTCAAAATAGCAAATTACAGATTGGATATCCGGTGT
AGAGCAGTGGATATCAAAGTCTCACTCGATAAATTGCTGTTCGTAAATTT
TGAAGCAAGATTTTCTCAGTATTAAATTAcgttattttgttattttgact
GATTCTAATATTGTTTTAATCAGTTTTGGAATTTCGTGCAAACGAACTTC
GATCGAAGGACGGATCTTAAAAATAATTTCCGCGGAAACTGAGCTTACAT
ATCGGGCTAATGAAAAACTTGATAGAGTttaacaaaagatttttgttaAT
ATTATATTATTTAAATATTATCCAGCTTTCGATACAATAGGCCTCAGAAA
ACCCTTTTTGCTACCAGCTACCCAAAGAAGTAATTCTGGCCAATATGTCC
CTTAATCGCGGGATAAGTTGATGATAGAATTTTcttgaagaaaatataaa
aagtgTTTCCAGGACCAGTTGGATTTACAATCGAAGAAGGAAATGAAGAT
TCGAAAAATGTTCCAACAATTCGACCGTACATTGGATGGGCTTTGTTGTT
ACCAAAGAATTCAGGATTTAGATGAAACTAACTGAATTAATTAGCTTGAC
AGTTTTTGAGCTAACACTCACATACAGAACTTTATTGGAAAACCTATTTT
AGTGAGGCAAAGTGTAACCTTTTTATGATAACTCCAAATACAATATCTCC
ATTAAACCTNTTcagccaaaaatacattcaaatatagcgcttttgactct
ctaaaacaagcaaaaaaaatttccataattatatttgactatcaaaagtt
ataggcattcttgtttccactgccaattatatctggacagactttagtct
tttttttaaaagttctctagctctctctttttgtacatttgcagaaaaaa
tagtttgaaagtaaggctagcattccgagctggatacatttgtgaaatct
aatgtgagaaaaacatcattagacaagaaattcagacaaaatgcttttAG
TGGCACGAAAtgttcaattggaaatatctttccaagactgtccccagaag
agctgaaattaacataaataagacttgagtgtcttggctccactgtgata
tgaaaatccttttgaggcacgtggtggcaaggtggttttttgaggttgaa
gtttgaaaatttccggtgtcaacattaaatttctgatacacaacacgtct
attgcatctttctcacagcttgaaacgtcataacgacttataattagcaa
ttaagtggaagaatctgactctcacaggaaagttttaagtctcttttggg
aattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNgaaatgcaataaaaatgcttcgaaaaatcattt
aatgagggaaggagagtgaacaataacatcattactgcggacatagctag
tacacgagaaatcggcaaaattATGTTACTtatatatccagtgtataata
aatccttggtttaacaaaagatttttattaaaatattatccAGTTTTCGA
TACTAGGACTCAGATTACCCTTTTTGCTAGCAACTACACAAAGAAGTAAT
TTTGGCCAATATGTCCCTTAATCGCGGGATAAGTTGATGACGGACTTTAT
TcttgaagaaaatataaaagtgttaatttttttcaggaccagtTGGTTTT
ACAATCGAAGAAGGAAATAAAGATTCGAAAAATGTTCCAACAATTCGANC
AGTTGGTTTTACAATCGAAGAAGGAAATAAAGATTCGAAAAATGTTCCAA
CAATTCGACCGTACATTGGATGGGCTTTGTTGTTACCAAAGAATTCAGGA
TTTAGATGAAACTAACTGAATTAACTAGCTTGACATTTTTTGAGCTAACA
AACACTCACATAcagaacttttttggaaaacctATTTTAGTGAGGAAAAT
CAaggttaaaaaaagtgtaaccTTTTTATGATAACTCCAAATACAATATC
TCCATTAAACCTGCACTTAATCGAATAATTCGGTTATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00042964TCONS_00042964Clytia hemisphaericatranscript
TCONS_00042965TCONS_00042965Clytia hemisphaericatranscript
TCONS_00042966TCONS_00042966Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00042966-proteinTCONS_00042966-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003817supercontigsc0003817:2..9439 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1	0.67	0.67	0.53	1.56	2.18	10.19	10.69	7.98	12.02	16.09	4.73	14.99	10.29	6.82	8.63	4.63	8.05	9.49	19.33	2.61	2.83	1.54	1.21	4.99	5.9	33.28	32.79	6.31	4.52