XLOC_033807 (gene) - C. hemisphaerica

Overview
NameXLOC_033807
Unique NameXLOC_033807
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_233:626657..630136+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033807 ID=XLOC_033807|Name=XLOC_033807|organism=Clytia hemisphaerica|type=gene|length=3480bp|location=Sequence derived from alignment at scaffold_233:626657..630136+ (Clytia hemisphaerica)
cagtATTAACGACATACTGTACTCCTAAATCGAAATATTTGAgatgaaaa
agatattgacatgcatacaaaaaattcttacactaaaaggtaaataaacC
AATTAATAATCAATTTGACAATAGCTATAATGGCAAAAGGCAATCAAATT
GTTGAGTTGATTAACAGGAATAATTGCATGTCTGTATGAAAATGAGCAAA
ATGAACTAATTGGAATGAATCATATTTGTCATACCACTTGAGAAGAGATA
GAGGTGGTGGAATATAGATGGTCATATTTTACTGAGAAGAGTAAAGTTTA
GACTGAGTCGTACGATTTATGATACGAAGATGTCGATCCGAAGTATAGGA
GGCAATTTACTTGGTAGCCGACGCAAGGAAAATCACTATAATGTCACTCT
AGATGATCAAAACAATCGAGCTAACGGGCGTGACCATTTATCACAGTTTG
AGAGAGGTTAGATCATTCTCACTATTGAGAAATACATTATTTCTTTCATT
CATTCTAATTctaataaatattttgactgAAGACCACACCTTTCAGTAGC
AATTCAATATTTCAGTTTCAAATTCGGTACATTTCACAACTATTNTTCAG
TAGCAATTCAATATTTCAGTTGCAAATTCGGTACATTTCACAACTATTTA
ATCTTTTATTCCAGGCAGTATGCTTCCAGTTGGTGCAAGCCGTAAAGACA
TCACTCGAATAAAGAACAAAGCTTACACATATTCAGAGAACTTCTCAATC
ATTGGATTAACTCGAGTCTTTACTGGAAACCCTGTTGAACGAGCCTTTTG
GTTTTGCGTATTAGTTGTTGCCATATCAATAGGAGTTTACATGAGTAGTG
AACTTATCACCAAATATATCAAAAAGGACGTGAGAGTGGACAAGCAGACT
ATAATCACTGATAGTAACCACTTTCCAACTGTCACCATATGTTTGAAGCC
ACCTCGCAAAAAGAAATATTGCAATCTAGCCATCGTTAGCAACCCTGGTC
AAGATAGTAATATGCAAGAACCATGCCCAGATGAGTATGATTCGACAGAA
AGGAATGAAACATTGCGATCAACTGTAGAAAAGAATCATATTACAATCGG
TGACTTTAAGATCTCATGCCAGGAACGTGGTATTTGTGAAAGTTTCTCTG
ATCTGATTAATACGTATTTCAAAGTGGAAACCAGTTTCGAGAATTGTTTG
ATTTGGAATTATGATGGAACATTTTTTAATGACGAGAACCGGTTCGATAT
TGATATTTCTATTCTGAACACGAAAAAAGAAGTCTTTGACCATCAGAAAG
ATGACATTCGAATCTACGTAAGTCCAAAAAGTGTTTACCTCCCTCTACAA
CACAACTATCTCACAACCNAAAAGGGATGGACTATAGAGGAGATCTTAGA
AAACATTCTCgattgatttttgtgatttttctcaACCGTTAAGATGTCGT
TTTGTAGAAATGTTTCCCCTGTCCACGTGACTCTAAAATTGTTGTTATAT
TTATCATTCAATTATAGAAAATTATCAATCTAAACTGTGCCTATTTataa
aaatacttcaatattattatattaACTTTTACAAACTAAAACTAGATATA
TTGTATAATGAGATAAAAGGGCAAAACTGACTACTTGATAAGTACTACTT
CTTTTGTCTTCGAATACGCGTATAATAATAGAGGGGTGGACTATGTCGAT
TGGTCCACCCCTCCATGGATTGNTCAAAGAGGTGCATaattgctttgaaa
aaatgtggagATACTTATGACTTTTGCAAAGACTTTTTACCCTTTGACTT
GGTTGATGAATACCACGACCCTGAAAAAAGTATTCTCGAAATTCATCGAT
GTTTAGATCAAAGTTATTACCAAGAGCGAAAGGTGACAGATTGCGAGCTT
CCATGCAAGGAAACTTCCTTTGATATTTATGGATCAAGTTATCACTTCAA
AGAAGACATTAACAAAACGAACTTTAAGTTGAGCATGAAATTCGAGAGCC
CTTACGTCTACAACCTAGAGCAGGAAGAAGTGTTGTATAGTTGGGGAGAT
TTCCTTGGAGGTTTAGGGGGAAACATTGGTCTATTTTGTGGGTTCTCTTT
ACTTTTTCTGATTGAGATAGCTGCTTTTGTTGTATTGAGATGTTGGGCTA
AAGTTGCCAAGAAACATTTGGTGCGAAGAGAACGTATAATTAAACGACAA
AGTCGAAGTGAGTTTCCAAATGATGATGTGGAGTTAAANTCCCATATTCA
TCAAAATTCCATCGAACTTcacgaaagaaaaaaataacgaaagagTAGAA
GCTAAAACTAAAAACagttaaaacattaaaaactaagaatattttaaagt
aAGTATAAAActtcaaatacaaaataatttAGAAAGTTATTCAAAAATCC
ATCCACATTAAGTATATTCGTTAATTGGCAAAATGAATAAATTTAAGTAT
TGTAATTCNGCCAAGAAACATTTGGTGCGAAGAGAACGTATAATTAAACG
ACAAAGTCGAAGTGAGTTTCCAAATGATGATGTGGAGTTAAAAGAAGTAG
CAATGGGTGAGAGTGAAGAATTTGCTGATGACCAACATTCTAGTGATGTC
AGTGATGAAGAGACGGATCCAACGCTTCAATATGATAAAAATCATGATGA
AATTACGGGCGAAAGACTTTATTACTCACAGACATTGATATAGAAGAAGT
ATCATTTATTGCGGCAATTCAGAATATCCTGATAGGTTGGGGTCCGGAAG
AGGGGTGCgaataatatttttttccaatgaaaaaaaaaaacagaaagaag
TAAGAATTAAAAGTAGAAGAATAATCTACTCGAAAAAAAGAAAGGACAAA
CGGATGATTATGGTTGAGGAAAAGTAGGAAACTTACTcggggaaaaaaga
aaaatttcttaggaaagttTTCCTATAAGCAAAGTATTACCTGACTATTA
AGTTTTCTCCTTTAAGTTTTGAAACAAATAACGGATGGAATTTTTTTACT
CtacatattttaaacaaaaccaATGTAaatagaatttaatggaaaacaAG
AGAAAATGTTTAATGCAACGAAACAACACTGCTACAAATTCGACTCGATT
ATCTGTATCTAACACATAAAAGGGATGGACTATAGAGGAGATCTTAGAAA
ACATTCTCgattgatttttgtgatttttctcaACCGTTAAGATGTCGTTT
TGTAGAAATGTTTCCCCTGTCCACGTGACTCTAAAATTGTTGTTATATTT
ATCATTCAATTATAGAAAATTATCAATCTAAACTGTGCCTATTTataaaa
atacttcaatattattatattaACTTTTACAAACTAAAACTAGATATATT
GTATAATGAGATAAAAGGGCAAAACTGACTACTTGATAAGTACTACTTCT
TTTGTCTTCGAATACGCGTATAATAATAGAGGGGTGGACTATGTCGATTG
GTCCACCCCTCCATGGATTGAACTCAATTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053566TCONS_00053566Clytia hemisphaericatranscript
TCONS_00053567TCONS_00053567Clytia hemisphaericatranscript
TCONS_00053568TCONS_00053568Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
Sodium channelTCONS_00053566-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:626657..630136 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03	0.06	0.02	0.02	4.03	2.89	20.64	22.42	9.61	6.64	5.56	4.28	0.73	1.47	0.69	0.76	0.27	0.54	0.64	0.86	0.04	0.13	0.17	0.15	0.25	0.5	1.38	0.88	0.27	0.2