XLOC_041087 (gene) - C. hemisphaerica

Overview
NameXLOC_041087
Unique NameXLOC_041087
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_440:344621..350687+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041087 ID=XLOC_041087|Name=XLOC_041087|organism=Clytia hemisphaerica|type=gene|length=6067bp|location=Sequence derived from alignment at scaffold_440:344621..350687+ (Clytia hemisphaerica)
gaagagcccaatctcaatttcaataaaagttttATCACAGTAGGcctatt caaaaaatttctttgtttttcactaACAAGTTTCTGAGCATTATCAAATT GGCATACTCTTTCtaacttttgtttattttctttgtagATGTTATAAAAA AGTACATGAAGTTTTAAGAAATGGTTACTGAGAAAAATGATTTATTTGAA ACCTATGGTGCTAGTCAAAGGTACTATTATGACTTGAAAGATGAAGAAAC CAATCATATTCAACATTATAATCAAAAGGAAAAACACAAGGGATTTGCGA ACAAAATAAAGGAGACTTTCAAGGTGATTATTATATGTGAAATTATTATA AAGATTCATAAGTTTGAAAAGTTACGATTCTGATTCTAAGAGCTCTGATT CTTGAGCTGACTTCTCATATTATCTCAAGCCAAAATCTCTATTAGACATT TGTTTATTAGCCCTTTTGGAAACATTATTttaagcttcaaaattttttgt cacGTGTTCGTAttgattcattttatttttctactTATCTATAGAGTGGA TTTCTACCTCAAGGCTACCCAACAAGTGTTAGTGAGGATTATTTAGAATA CCAATTATGGGACACAGTACAGGTTTGATATTCTTGTTATCATATAGTGA TAAACACTTTAcagtttgtttatttattttcattcttttgaTAAGCGATA GTAAACATTTCAAACTACTTTTACGAGTTGTAAGTGATCGTTTGTTTCAA ATgcaatgaaatgaaatgaaatgaaaaaccaaaaaatcatTGTGTATCAT TTGATGTGTATATCACTCGAAGAAATGAACTTATCTGTTGTATCAATGTT TTATTTAATCATTGACACATCCTTCCACGAGATACACCCAAGCATGAAAg ctattttatctttttttaggctttttgttcctccattacTGGAATGTTGG CAACACAAGCTATCCTCAAAGGTTATGGTGTAGGAAATGAGAAAGCAACT GTGATGGCTGCCTCAATTACCTGGATGCTGAAAGATGGAGCTGGTATGAT AGGCAGAATCATGTTCGCTTGGTTGAAAGGGTAAAACAATAAGAAATCAG AATAACTGAGCCATTCTAGATTAAAAACGCTATATAATACTACTTTAGTA AAATACTTTCTTGCAATTAACAAGTCGCTCTTAATTTATTAGATGTTAGT TTGATTATTAAATCTTGAAGTCATAAAGAAGgatcaatgataattttttt gtattcaTAAAATTCTTTTTAACCTATTGTATGTACAAGTAAAAAGAGTT ATAAGGGGTCGGTTccattttctttctattttagAACTCAACTAGATTGT GATGCTAAACGGTGGAGGTATGATTTTGAACAATCTAAAAACTTAACGAC GATAAAAAGATCTTGCCCTTGCCTCCTTGTCAATTTGTGAGctagatttc caaaaaaagagAACCCTGGGTTTgctaaatgtttattttttggaTAGCTT TTTGAAATACTATTTTAGTACACttgactagccgtcacccggcgtcgcac tcgccgaggagtagataagctgaatgcatcataagccctttggatTGTTG AGAGGTTATGTACTGTTTTATTGTTTTAGGTTATGTGCTGATGTTCTGAA TGATACAGCTATATTCCTTGATCTTCTGGCACCCATCTTCAAGAGTTACT TCATTTTTATTGCATGCTTATCAAGTATCACTAGGGTAAAAATTCAACAG CTTCATGCTGAACATGAATGATAAAGATAAATTAGCAAACCCATTTGATT TATTCAAAGAGTTTCTTTTGGCTTTCTGTAAAAATGAGAAACCAATAGAA ACCAACTCTTTTATTATCATTATGCTATAGTTACTTCTACTACTCTAAGT GTGATCTCTTTACAACCACCATTTGGAAAGCATCAGAATAATTAGATTAA TCCCCTTGAGAGTTGTTTCCACATGTATTGAAAAAGAGTCCACACTTAAG TAATGTTTACTACAAAATTTCTTAGCCCAAGCTAATGGTTTTGATCAGCC AAGCTAGCCAACCTTGATGTTGGTAAACATTATCTCACTTTAATAAAATA ATCTCTTTTCACAGTCAATCGTAGGTGTGGCTGGAGGGGCGACAAGAGCA GCTTTAACACTTCATCAAGCGAGAAGAAATAATATGGCTGATGTCTCTGC CAAGGATGGTAGTCAGGTATTTTATGAGAATGGAATCcctgattttttct gaaatttctcaGGAGATGAAACAGGCTCTTTCTTTTGTTACTGGAGCTAT TATTACAATGAACAATGATATTAACGAGGTTAAgaagcaagtgtttattt agaccgtTTAATGCGATATCGTAGGCTTttgtacataagatttcacttgc atggtttgctttggtaatttatgtacaggcctaccgTATCACACTTTACG GTGAAAATAAACcgttgcttaacctcgctattgcCGGCTAGGTGGCTGTT CAGTTGGTACAGTATTACCTCTCAATCAAAGGGTAGTTCTAGCTCAGCAA TTTATCTTTCATGTCTAGTGCAGCAAGCAAATAGTAAAGAATTTTATAAT GCTTTCAGGAAACACTGGTCAACTTGATGGCTTTGATAGCAAGTTTCATC CTAACACCAATTGTCGCCGATCGTCCAATGTAAAGTAtctcatttttttt caactttcattttATCTGGGGTTGTTTTTGAATGTAAAATTGAGATTATG GCCACAGAGAGGTGTATTATAAGTTGTTTTATacaaaaaagagttttttg aaCTTCCAATTAAGTTTTGTACAAATAATTCTATCATtacataaaaaaac attttccagaTAGAATTTCTAAGTTTGTATTGTTGATAGTTTTGCATTGA CCAACTTCTTGTTGTTAGAATACTCCACTTGGGAATTGATCATAATCTAA TGATTATTTTTGCTTTTCATTTATAGATTAGTCTGGTTCTTATTTATTCT CTTCACTTTCTTTCACCTGTTTGCTAATTATCGTGCTGTCAGTTGTGTTG TCATGGAAACGCTGAATATGAATAGACTGTACATTGTCATGCAGCATTTC ATTGAGCATGAAGCTTTCTTATCGCCAAAACAGGTCAACAAACTAGACCC AGTGCTAAGAAGTATNCTGTACATTGTCATGCAGCATTTCATTGAGCATG AAGCTTTCTTATCGCCAAAACAGGTCAACAAACTAGAACCAGTGCTAAGA AGTATGCTCTTTTTCACTTGCTTGCTTGGTGTTCTGTAATCTCATAAAAC GGTTTCAAAATGACCAATGACCAAACTTACTTTTGCTACAACTTTTATTT ACCACAACGGGTTTtctgttttaaaaatttctttgtttagttttcttgaa ataaattGACCACATTACCCAGTAGTGTATTTCCTATAGAGTAAAGGAAT AATGGACTTTTTCAGGCCTGATTGAATATGATTTGCTATCACGCATTGTA CTCCGCTTATACTATACCTTTTGAGCCTGTATACTTATCAAAAAAGCCTT TTGCTTTGGGATATCTCTTTAATGATCTTACCGAATGACCCGTTAATTCA AGCCCTAAACAGCTTGGGCCAATGAAATTTAGGAATTAGATATGCATAGT CTTAATTCAAAATTTaggtattactttttaaatttgactccttaatcttt aaaaaatgtgaaaaactaattttcttacATTCCTTTTGTTTCTCAGGGCA CTGTAATTTCAAAGACATTTGTATTGGTTCGAAGTTGGGAAGTATAATTA GGACGTTAGTAAAGTAGTTTTGTTTATAACAGAGCTGTAAGCTGTTGAGC TGTAAGCCTTAGGTCTATCTTAATTCAGGAGCTACTGTGTAGTATTACAA GCATCAAGGTTGTAACAAGAATCCCTTTTTTACTTTCTCTAATCAACAAA GTCAAGTATGATTTTCTATAGAATAATCCATTGATCCACTTTTTCGTTCT ACCCGCATAGTATTGATTATTTTTATGCTATCCTTCTTTACAATATTCCT CCAATCCTACAATTCAGGTATAAAATCCACAATAGTGATTTagaagaaat tttgaagaatgaaAGAAATCAATACATTGTTTCATTTGACCAAGGTAAGC TTAACACATTGCCAAAATACTATAATTTGCATGTGTACTTCAAATATGAA AACAAAGTAGCCTAATAATATCATAAGCATCTTATAGGCACATATTCTAT TTTAATTAACACACTCACTGCATAGGTGATATGACTTACTCTCCCTACAT TTAAGTTTCTAAAGTTTATTAGATCCTGGACCACTGTACCTTTCTATTGC CTTTCGGTGTTGAAGAGAAATTATCTCTTTTTCTTGCAAATACCCTATTT GTAACTTTGGCACACTTTTAGATTATGTTCCCTTCAGGGAATTCGAATAT AATTCTTTTGTATCTTAGGGAAAGTCTATGTTGCATTGCGCCATGGAGTT GACGATAGTATTATCTTGCAAAGTAGCATAATGGCAATCCTGTTGGATAT TGCTTTACGTAGTAGTGATATTGTAAGAAATCATACTTCTCAAATTGTAA TTCATACTGTATTTCGTACGTTTATCTGACAGGTGACGGCTCATAGCATA TACAAAGTACCAATAAAAGCTTGGCATTTAAGCTTTCAAGAGATTGGTTT TCGAGCATCTGTCACACTCCTAATGATCATTCTAAGGAAAAAAGAccgct tattaattttgaaaaaatttcaatcgTCACAAGCTGAactgctctaaata gcctggtttTAGCTTATAATTACTTTTTTTTCGGTAATTGCAGCTGTAAT AGTTAAACCATTTTCTTTTAGAATTCCCAATATCTAAATAGTATCAGGAG CTGTATAGGTAaggattttcatttttgcaAGTTCGGCCTCTAAGAGTTCC TAAGGAGCTTGTGCTCGAGTTTTTCAGGGCTGAATGATAACTAGCAATAT GTTTAGCAATATGTTACAGTcattttaatgatatttttttcaatcattga TCCCCTTTCTTACAGCTTTTGACGCAAGAGCTAATTAGGTGTATTAAAGG ACCaggaaatgagaaaattttatatttcttCATGATCAAAACCCTGATAT GGTGATTACCCGTGATGCACTCTTCTGTTAGTAGAGCACGGAGGTGCGTC GCTTTTTTCGCACTTACTTTTACCCCAAAATACTATCTTTAAAATCAAGG AATTGCGTATTATGAAATGGTATTGTTGATATGCTGATTTTCAATTGCAG ATAAAGGAAACCCACACTCAACATTTCAAAGATTAAAACCCTACGTTGAA GATTTGAATGTCAAACTTGTGAAAGGTTTATCCGCAAACGGTTGGGATTT AACAAAATACCATTTAAATGCTGACGAATGGCGATATCAATGGCCTGATA AAGCTCTTTAGTCTTGTTTATGGTAGATTATTATTTAAAGTCTTTTAAAA ACGGTGAATGTAAAAgaatatttattattttctgttttctgtttttctta gtattttaaTTAATGATTAATTTTGAGGTTTTCCTTCGAAAAGTAATTGG GTTTTGAAGTCGGAAgatattttttagcattttggcaaatattttatact ttttttagtATTCTCGCCAccaatatataaaattttagcatacagtatat ggcccccaaaacggaggttttcattaaaatgaagattctgacttgtagat ttatcagaattaaacgatttttgtttattttgaaagaatgatgaaattga ttttgaaaaaataggcatgtttttgctggtttgagacggattcacaataa catatttgcgtctaaaggaaatactttaacaccaaaattagataaaaatt gcatataactcactctagctccttggatattgaaaataagttatgaaaac ggggtatagggaactttctacacctaatgccgttcagagaatgcaaatac atctgtgactttagaggctagGTAAAAGATATACCGGGTGctccacaaaa aagtttctctctttaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065558TCONS_00065558Clytia hemisphaericatranscript
TCONS_00065559TCONS_00065559Clytia hemisphaericatranscript
TCONS_00065560TCONS_00065560Clytia hemisphaericatranscript
TCONS_00065561TCONS_00065561Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:344621..350687 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
C16orf58RUS1 family protein C16orf58 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.82 60.79 35.47 28.85 14.68 10.27 14.35 13.91 15.63 13.82 12.93 12.4 11.6 11.98 10.72 13.05 12.96 15.03 9.44 9.08 12.56 11.92 29.73 27.52 12.4 13.41 13.42 13.84 19.79 23.15