TCONS_00007445-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007445-protein
Unique NameTCONS_00007445-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length994

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007445-protein ID=TCONS_00007445-protein|Name=TCONS_00007445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=994bp
MFTSKVSFGLKTLVNFTRNPCLKSSTRNFHYKMDPNTDSKALRQSFIDFF
VKKYGHTFVPSSSTIPHDDPTLLFANAGMNQFKPLFLGTADPKSDLAKLK
XAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDFFKKEAIPW
AWEYLTDVCGLDGSRMYVTYFGGTDDVPPDLESKQIWLDLGIPPERVLPF
GMKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAHLVNMDVPDVLEIWNLVF
MEFNREHGGKLTPLPAKSVDTGMGLERIASVIQGKMSNYDTDIFMPYFDA
IQKSSGIRAYTGHVGEEDTDGIDMAYRVLADHIRTLSIALADGGRPDNAG
RGYVLRRILRRGIRYATEKLNCKPGFFASLVDIVCENLGEAFPNLLKDPD
MIKEIINEEEVQFLKTLSRGRRLFNRAAEKATDNKMSGEVAWRLYDTYGF
PIDLTCLMAEERKMTVDMTGYETAKAHAQLIAKAKGSGQEDLCTLDVHAI
DELKTKGFPATVEAPKYDYEKDGNNKYVFKSIQATVAALRINKQFVDQVT
TGNRCGVLLDASCFYAEQGGQMYDLGYMNVEGDESVEFAVRDVQVHGGYV
LHLGNLEGNLKVGDKVVCSIDEQRRRTLMSNHTGTHVLNYALRKVLGEAD
QRGSLVAPDRLRFDFSCKSAMTTEQLENAENIVRGVINQKQPVYAKVSAL
VVAKNIQGLRAIFDEVYPDPVRVISIGNTLEELQADPQAGFNTSVEFCGG
THLRNTGDIEEFAIVSEEAISKGIRRIVAVSGHDAEKAHSKAAVLDGKLN
DLKESINQKRNTNTLNLKEMSTLIARLTDDISECSIPQWKKNKLREDLKK
TKKELDDADRAMKAGRMQRVVEQAVEIAKANQDKAFIVQQVEDGCNSKAL
DAALKQVKTNSPNLAAMFFSIDQDTKKVLCLCQVPKDVVDGKGLKANEWV
KEVSTVIGGKGGGKPLSAQGSGENLQEINKAISLAKEFASLKLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004200XLOC_004200Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007445TCONS_00007445Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002318Ala-tRNA-lgiase_IIc
IPR012947tRNA_SAD
IPR018164Ala-tRNA-synth_IIc_N
IPR003156DHHA1_dom
IPR018165Ala-tRNA-synth_IIc_core
IPR023033Ala_tRNA_ligase_euk/bac
IPR018162Ala-tRNA-ligase_IIc_anticod-bd
IPR018163Thr/Ala-tRNA-synth_IIc_edit
IPR009000Transl_B-barrel
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016876ligase activity, forming aminoacyl-tRNA and related compounds
GO:0004813alanine-tRNA ligase activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0043039tRNA aminoacylation
GO:0006419alanyl-tRNA aminoacylation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006419 alanyl-tRNA aminoacylation
biological_process GO:0043039 tRNA aminoacylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004813 alanine-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 841..868
NoneNo IPR availableGENE3D3.30.980.10coord: 621..794
e-value: 1.6E-40
score: 138.1
NoneNo IPR availableGENE3D3.30.930.10coord: 36..286
e-value: 1.3E-115
score: 384.4
NoneNo IPR availableCDDcd00673AlaRS_corecoord: 42..285
e-value: 4.58835E-133
score: 402.124
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 39..289
IPR002318Alanine-tRNA ligase, class IIcPRINTSPR00980TRNASYNTHALAcoord: 327..343
score: 56.56
coord: 270..283
score: 68.96
coord: 351..364
score: 70.6
coord: 116..127
score: 58.01
coord: 243..254
score: 67.63
IPR002318Alanine-tRNA ligase, class IIcTIGRFAMTIGR00344TIGR00344coord: 42..971
e-value: 4.5E-264
score: 876.6
IPR012947Threonyl/alanyl tRNA synthetase, SADSMARTSM00863tRNA_SAD_4coord: 721..778
e-value: 2.6E-20
score: 83.5
IPR012947Threonyl/alanyl tRNA synthetase, SADPFAMPF07973tRNA_SADcoord: 721..778
e-value: 1.1E-18
score: 67.0
IPR018164Alanyl-tRNA synthetase, class IIc, N-terminalPFAMPF01411tRNA-synt_2ccoord: 42..624
e-value: 9.0E-216
score: 717.6
IPR003156DHHA1 domainPFAMPF02272DHHA1coord: 842..988
e-value: 1.2E-21
score: 77.4
IPR018165Alanyl-tRNA synthetase, class IIc, core domainPROSITEPS50860AA_TRNA_LIGASE_II_ALAcoord: 37..791
score: 119.326
IPR023033Alanine-tRNA ligase, eukaryota/bacteriaHAMAPMF_00036_BAla_tRNA_synth_Bcoord: 39..993
score: 139.232
IPR018162Alanine-tRNA ligase, class IIc, anti-codon-binding domainSUPERFAMILY101353Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)coord: 290..493
IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domainSUPERFAMILY55186ThrRS/AlaRS common domaincoord: 624..785
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 544..620

Blast
[Close]
BLAST of TCONS_00007445-protein vs. Swiss-Prot (Human)
Match: SYAC (Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2)

HSP 1 Score: 1178.7 bits (3048), Expect = 0.000e+0
Identity = 572/969 (59.03%), Postives = 726/969 (74.92%), Query Frame = 0 
Query:   33 MDPNTDSKALRQSFIDFFVKKYGHTFVPSSSTIPHDDPTLLFANAGMNQFKPLFLGTADPKSDLAKLKXAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDFFKKEAIPWAWEYLTDVCGLDGSRMYVTYFGGTD--DVPPDLESKQIWLDLGIPPERVLPFGMKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAHLVNMDVPDVLEIWNLVFMEFNREHGGKLTPLPAKSVDTGMGLERIASVIQGKMSNYDTDIFMPYFDAIQKSSGIRAYTGHVGEEDTDGIDMAYRVLADHIRTLSIALADGGRPDNAGRGYVLRRILRRGIRYATEKLNCKPGFFASLVDIVCENLGEAFPNLLKDPDMIKEIINEEEVQFLKTLSRGRRLFNRAAEKATDNK-MSGEVAWRLYDTYGFPIDLTCLMAEERKMTVDMTGYETAKAHAQLIAKAKGSGQEDLCTLDVHAIDELKTKGFPATVEAPKYDYEKDGNNKYVFKSIQATVAALRINKQFVDQVTTGNRCGVLLDASCFYAEQGGQMYDLGYMNVEGDES---VEFAVRDVQVHGGYVLHLGNLEGNLKVGDKVVCSIDEQRRRTLMSNHTGTHVLNYALRKVLGEADQRGSLVAPDRLRFDFSCKSAMTTEQLENAENIVRGVINQKQPVYAKVSALVVAKNIQGLRAIFDEVYPDPVRVISIGNTLEELQADPQ--AGFNTSVEFCGGTHLRNTGDIEEFAIVSEEAISKGIRRIVAVSGHDAEKAHSKAAVLDGKLNDLKESINQKRNTNTLNLKEMSTLIARLTDDISECSIPQWKKNKLREDLKKTKKELDDADRAMKAGRMQRVVEQAVEIAKANQDKAFIVQQVEDGCNSKALDAALKQVKTNSPNLAAMFFSIDQDTKKVLCLCQVPKDVVDGKGLKANEWVKEVSTVIGGKGGGKPLSAQGSGENLQEINKAISLAKEFASLKL 993
            MD    +  +RQ FIDFF K+  HT+V SS+TIP DDPTLLFANAGMNQFKP+FL T DP   +AKL  A N+QKCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFGD+FK+ A   A E LT   G+   R+YVTYFGG +   +  DLE KQIW +LG+   ++LP  MKDNFWEMGDTGPCGPC+EIH+DRIGGRDAAHLVN D P+VLEIWNLVF+++NRE  G L PLP KS+DTGMGLER+ SV+Q KMSNYDTD+F+PYF+AIQK +G R YTG VG ED DGIDMAYRVLADH RT+++ALADGGRPDN GRGYVLRRILRR +RYA EKLN   GFFA+LVD+V ++LG+AFP L KDPDM+K+IINEEEVQFLKTLSRGRR+ +R  +   D+K + G+ AW LYDTYGFP+DLT L+AEE+ + VDM G+E  +  AQL ++ KG+G EDL  LD++AI+EL+ +G   T ++PKY+Y  D +  YVF++  ATV ALR  K FV++V+TG  CGV+LD +CFYAEQGGQ+YD GY+    D S    EF V++ QV GGYVLH+G + G+LKVGD+V   IDE RRR +MSNHT TH+LN+ALR VLGEADQ+GSLVAPDRLRFDF+ K AM+T+Q++ AE I   +I   + VY +   L  AK IQGLRA+FDE YPDPVRV+SIG  + EL  DP   AG  TSVEFCGGTHLRN+     F IV+EEAI+KGIRRIVAV+G +A+KA  KA  L   L+ ++  +  +   N    K++   IA L + ++   IPQW+K++LRE LK  KK +DD DRA KA   +RV+E+  +   +N ++  ++ ++E G ++KAL+ ALK  K +SP  +AM F++D +  K+ CLCQVP++  + +GLKA+EWV++VS ++ GKGGGK +SAQ +G+N+  + +A+ LA  FA L+L
Sbjct:    1 MDSTLTASEIRQRFIDFF-KRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGLDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQGKGAGGEDLIMLDIYAIEELRARGLEVTDDSPKYNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKCLSVMEAKVKAQTAPN----KDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAAN-RGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQLRL 963
The following BLAST results are available for this feature:
BLAST of TCONS_00007445-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYAC0.000e+059.03Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens ... [more]
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