TCONS_00011758-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00011758-protein
Unique Name	TCONS_00011758-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	924

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00011758-protein ID=TCONS_00011758-protein|Name=TCONS_00011758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=924bp
MLTEEQKKKIEENRRKALEKRKRKKHTSPNRSCIPENISSPPFKKRPINN
TTTDGSLKAHLNTVDIGPITPPKKTLPQTSYSPSFKKKCTEATNGVSDGF
AFSPQKNLLRQTSYSPSFKRKTADISSQEQKTIDNNDHFTLTPERKAISK
TSYSSLFKNGNDLSTNNTMLTSSCACPSQQSFQKKVSSPEKKSIPKTSYS
PSFKKSSNNPENGYAAGSPQSLKSFEKSNTSPEKKVLPTTSYSPSFKKSS
STQDESQRRSFSAKRTIEPDLTHSTIKNIVQGEGQSQEQLTRSEINRMKA
LEKLKMKQNETISTSSSSTTKITSPQRSRSIFNKELSQKPEEVIEVAFSV
NSPTWIRLHSQSNDKIHSIIKRFNTNFDKGNWLFHVKDYKEVVSCFENIA
NIKIKESIPSSVVKILHYAHEEQKRKPSDKIDLSKIEENILKKLMPFQKT
GVQFAIQKKGRVLIADDMGLGKTVQTIAICNYYIEDWPVLIICPSSVKMS
WQQHFLSWMPTLRESDISIIHTGKEKIRAVPGSITIVSCDLASKFANDIQ
NCGFQIIIVDESHALKNSQAKRTKNLLPILQNSRRTILLSGTPALSRPKE
LFTQISALRRELFKSYFKFAKRYCDAREGRYGLEDDGCSNSDELNAILKS
TVMLRRMKYEVLDQLPSKIRQILILDPSFIKISKQFKTLEKAFVASRRTK
ENRTPLLQYYSATAEVKVGGVVQFISEKLESTTEKIIVFAHHLTMLDQIE
EETRCKNIESIRISGTTGSKARQSLVDIFNNTASCRLAILSITAAGTGLN
MTASSLVIFAELYWNPGHLIQAEDRAYRIGQKKSVSVIYLIARQTADDWI
WPLIKNKLNVLTNLGVGTTKGLSDAKCTEAEKKITDFFGSNSHEDDDGEL
DELLSNLQHTFDDDLMLEISQRSS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_006605	XLOC_006605	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00011758	TCONS_00011758	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd
IPR000330	SNF2_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..27
None	No IPR available	GENE3D	3.40.50.10810		coord: 414..670 e-value: 1.3E-35 score: 122.1
None	No IPR available	GENE3D	3.40.50.300		coord: 701..865 e-value: 6.4E-21 score: 73.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..292
None	No IPR available	CDD	cd00046	DEXDc	coord: 462..593 e-value: 3.27458E-16 score: 75.8368
None	No IPR available	CDD	cd00079	HELICc	coord: 705..838 e-value: 1.36871E-16 score: 76.8928
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 747..830 e-value: 2.6E-12 score: 56.9
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 724..830 e-value: 1.1E-12 score: 48.2
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 720..904 score: 12.501
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 440..613 e-value: 3.6E-24 score: 96.3
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 453..611 score: 17.601
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 463..681 e-value: 1.2E-25 score: 89.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 407..656
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 707..862 coord: 554..595

Blast

[Close]

BLAST of TCONS_00011758-protein vs. Swiss-Prot (Human)
Match: SMAL1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 2.903e-131
Identity = 219/536 (40.86%), Postives = 338/536 (63.06%), Query Frame = 0

Query:  382 WLFHVKDYKEVVSCFENIANIKIKESIPSSVVKILHYAHEEQKRKPS-----DKIDLSKIEENILKKLMPFQKTGVQFAIQKKGRVLIADDMGLGKTVQTIAICNYYIEDWPVLIICPSSVKMSWQQHFLSWMPTLRESDISIIHTGKEKIRAVPGSITIVSCDLASKFANDIQNCGFQIIIVDESHALKNSQAKRTKNLLPILQNSRRTILLSGTPALSRPKELFTQISALRRELFKSYFKFAKRYCDAREGRYGLEDDGCSNSDELNAILKSTVMLRRMKYEVLDQLPSKIRQILILDPSFI--KISKQFKTLEKAFVASRRTKEN-RTPLLQYYSATAEVKVGGVVQFISEKLESTTEKIIVFAHHLTMLDQIEEETRCKNIESIRISGTTGSKARQSLVDIFNNTASCRLAILSITAAGTGLNMTASSLVIFAELYWNPGHLIQAEDRAYRIGQKKSVSVIYLIARQTADDWIWPLIKNKLNVLTNLGVGTTKGLSDAKCTE------AEKKITDFF-GSNSHEDDDGELDE 902
            W F ++++ ++++    +  +++ + +P+++   L +A + +K   S      + DLS+++  ++  LMPFQ+ GV FAI K GR+L+ADDMGLGKT+Q I I  +Y ++WP+L++ PSSV+ +W+Q FL W+P+L    I+++ TGK+++ A  G I IVS DL SK    ++   F+++I+DESH LKNS+  R +  +P+L+ ++R ILLSGTPA+SRP EL+TQI A++   F  +  F  RYCDA+   +G +  G SN  EL  +L+  VMLRR+K +VL QLP+K R+I+++ P  I  +         K      +TK+  +  L+ +++ TAE K+  V+++I + LES  EK +VFAHH  +LD I +E   K+++ IRI G+T S  R+ L   F  +    +A+LSITAA  GL  +++ LV+FAEL+WNPG LIQAEDR +RIGQ  SV + YL+A+ TADD++WPLI+ K+ VL   G+  T      + T+       ++KI D F  S   E  D EL E
Sbjct:  372 WSFLLEEHSKLIAKVRCLPQVQL-DPLPTTLT--LAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTA--GLINIVSFDLLSKLEKQLKT-PFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELLE 901

The following BLAST results are available for this feature:

BLAST of TCONS_00011758-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00011758-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMAL1	2.903e-131	40.86	SWI/SNF-related matrix-associated actin-dependent ...	[more]

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TCONS_00011758-protein (polypeptide) - C. hemisphaerica