TCONS_00012564-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012564-protein
Unique NameTCONS_00012564-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012564-protein ID=TCONS_00012564-protein|Name=TCONS_00012564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MIDCGGIPMAIGVQCDMCTPALTNFGSDELRKTFLAPSIAGDFIGCLGVS
EVGAGSDVAAITTNAVKKGDDYVINGSKMWTTNGSQADWICLLANTGGDN
PHMNKSLIIVPMNSPGVSTSTPFKKLGMRSSDTVQTFFDNVVVPQKYRIG
DEGKGFFYQMNQFQDERLVAGVQVLSIVGRLIQETANYTYSRKAFGQPLL
DNQVIHFRLAELETELEALRSLVYRAVGLYLKGHDVTKLASMAKLKGGRL
ARETADACLQYWGGMGYIDGLMSRTFRDVRLLSIGGGADEVMLGIICKYM
DTLPRK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007046XLOC_007046Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012564TCONS_00012564Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013786AcylCoA_DH/ox_N
IPR006091Acyl-CoA_Oxase/DH_cen-dom
IPR009075AcylCo_DH/oxidase_C
IPR006089Acyl-CoA_DH_CS
IPR009100AcylCoA_DH/oxidase_NM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003995acyl-CoA dehydrogenase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003995 acyl-CoA dehydrogenase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.110.10coord: 47..141
e-value: 1.1E-35
score: 121.4
NoneNo IPR availableGENE3D1.20.140.10coord: 142..306
e-value: 1.8E-44
score: 150.9
NoneNo IPR availableCDDcd00567ACADcoord: 17..296
e-value: 3.82388E-95
score: 286.102
IPR013786Acyl-CoA dehydrogenase/oxidase, N-terminalGENE3D1.10.540.10coord: 2..46
e-value: 8.2E-6
score: 25.9
IPR006091Acyl-CoA oxidase/dehydrogenase, central domainPFAMPF02770Acyl-CoA_dh_Mcoord: 46..141
e-value: 3.3E-22
score: 78.4
IPR009075Acyl-CoA dehydrogenase/oxidase C-terminalPFAMPF00441Acyl-CoA_dh_1coord: 153..298
e-value: 3.3E-39
score: 134.4
IPR009075Acyl-CoA dehydrogenase/oxidase C-terminalSUPERFAMILY47203Acyl-CoA dehydrogenase C-terminal domain-likecoord: 151..303
IPR006089Acyl-CoA dehydrogenase, conserved sitePROSITEPS00072ACYL_COA_DH_1coord: 48..60
IPR009100Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domainSUPERFAMILY56645Acyl-CoA dehydrogenase NM domain-likecoord: 3..165

Blast
[Close]
BLAST of TCONS_00012564-protein vs. Swiss-Prot (Human)
Match: ACADS (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.532e-50
Identity = 101/300 (33.67%), Postives = 149/300 (49.67%), Query Frame = 0 
Query:    4 CGGIPMAIGVQCDMCTPALTNFGSDELRKTFLAPSIAGDFIGCLGVSEVGAGSDVAAITTNAVKKGDDYVINGSKMWTTNGSQADWICLLANTGGDNPHMNK--SLIIVPMNSPGVSTSTPFKKLGMRSSDTVQTFFDNVVVPQKYRIGDEGKGFFYQMNQFQDERLVAGVQVLSIVGRLIQETANYTYSRKAFGQPLLDNQVIHFRLAELETELEALRSLVYRAVGLYLKGHDVTKLASMAKLKGGRLARETADACLQYWGGMGYIDGL-MSRTFRDVRLLSIGGGADEVMLGIICKYM 300
            C    + + V   +    +  FGS E ++ ++ P  +GD IGC  +SE G GSD  A +T A  +GD +V+NG+K W TN  +A    + A+T  D    NK  S  +VPM +PG++      KLG+R S T    F++  +P+   +G+ G GF   M      R+    Q L I    +    NY  +R AFG PL   QVI F+LA++   LE+ R L +RA  L        K A+MAKL     A   +   +Q  GGMGY+  +   R +RD R+  I  G  E+   +I  ++
Sbjct:  109 CASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFAST--DRALQNKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHL 406
The following BLAST results are available for this feature:
BLAST of TCONS_00012564-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACADS6.532e-5033.67Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
back to top