TCONS_00012802-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012802-protein
Unique NameTCONS_00012802-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012802-protein ID=TCONS_00012802-protein|Name=TCONS_00012802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp
MASQPPSKKQKTELSNPLTKKQVFGGLNVCIIEQGLGKTRCNIFTDQLKK
HGAAVSKSLDTDIEYLLVSKDMKLERLFKILKRKQIKDDIHIVSVDWLSA
SLVSGKLENLKPYEKFVDRNNEKRDPSKQGNDSLNTKDEEDLTVRALPGS
SSSSGVVLKPRTSYEELLALRNRKDLDSSPDEEEERTSPSDSKKDFTKVK
SELPKGTWVCAKPSSSTNQKVNHNKHITEKLEVLQKTYENSKDKWRAMGY
KKAINSIKNYSKSLSSFEEVKSLPFVGGRLAEKIWEIIETGHLRRLDHID
EKSELINKFAAVWGAGPSAAATWAAQGFESLEDLEKNADLTFQQKIGIKH
YDDINQKMPREEVTEIEQHIRKIAEDVLPGIHMEICGSYRRGRSHCGDID
VLFSHPNDELRKSFLRAVLEKLKETNLITDDLICVNSEEQRKYMGVCRLP
RENAKFRRIDFIVAPFNEWPLALMHFTGSAHFNRSIRLLAKKKNMSLSEH
ALRKDVIRVGGEKVNKGTSISISSEKDIFEYFGLDYLKPTDRDCWVTKQV
EVNKICYKCVTTEAWEPATTFECPDKCPHRGPHFNGNIADPNNPHQXQKH
GNQPPPSNVQTNAHTVDHTSMETLLTPTTHINMLLVGMEQLSDASLVQKD
YCSTRNGTPVCLMANTRPNQNKEIHTTDFINFDVLGHPTKTKKNENCK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007187XLOC_007187Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012802TCONS_00012802Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002008DNA_pol_X_beta-like
IPR022312DNA_pol_X
IPR002054DNA-dir_DNA_pol_X
IPR010996DNA_pol_b-like_N
IPR001357BRCT_dom
IPR018944DNA_pol_lambd_fingers_domain
IPR029398PolB_thumb
IPR028207DNA_pol_B_palm_palm
IPR019843DNA_pol-X_BS
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0034061DNA polymerase activity
GO:0003887DNA-directed DNA polymerase activity
GO:0016779nucleotidyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0034061 DNA polymerase activity
molecular_function GO:0016779 nucleotidyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 224..244
NoneNo IPR availableGENE3D1.10.150.20coord: 301..355
e-value: 5.8E-15
score: 54.5
NoneNo IPR availableGENE3D3.30.460.10coord: 357..473
e-value: 1.7E-34
score: 118.1
NoneNo IPR availableGENE3D1.10.150.110coord: 194..300
e-value: 5.4E-26
score: 90.5
NoneNo IPR availableSUPERFAMILY81301Nucleotidyltransferasecoord: 357..543
NoneNo IPR availableSUPERFAMILY81585PsbU/PolX domain-likecoord: 300..356
IPR002008DNA polymerase family X, beta-likePRINTSPR00870DNAPOLXBETAcoord: 457..465
score: 48.89
coord: 385..404
score: 55.0
coord: 472..479
score: 52.5
coord: 275..292
score: 45.56
coord: 345..359
score: 42.67
coord: 525..542
score: 50.0
IPR022312DNA polymerase family XPRINTSPR00869DNAPOLXcoord: 314..331
score: 37.61
coord: 398..406
score: 49.57
coord: 474..487
score: 41.21
coord: 384..398
score: 41.54
coord: 458..467
score: 36.15
coord: 524..542
score: 51.82
IPR002054DNA-directed DNA polymerase XSMARTSM00483polxneu3coord: 222..543
e-value: 1.7E-79
score: 280.1
IPR002054DNA-directed DNA polymerase XCDDcd00141NT_POLXccoord: 225..542
e-value: 1.44742E-115
score: 351.497
IPR010996DNA polymerase beta-like, N-terminal domainPFAMPF14716HHH_8coord: 224..289
e-value: 2.2E-15
score: 56.6
IPR010996DNA polymerase beta-like, N-terminal domainSUPERFAMILY47802DNA polymerase beta, N-terminal domain-likecoord: 207..299
IPR001357BRCT domainPFAMPF00533BRCTcoord: 22..102
e-value: 4.9E-8
score: 33.2
IPR001357BRCT domainGENE3D3.40.50.10190coord: 14..115
e-value: 8.4E-14
score: 51.1
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 19..115
score: 14.397
IPR001357BRCT domainCDDcd00027BRCTcoord: 26..102
e-value: 5.82611E-5
score: 40.7679
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 22..114
IPR018944DNA polymerase lambda, fingers domainPFAMPF10391DNA_pol_lambd_fcoord: 308..355
e-value: 2.7E-16
score: 59.0
IPR029398DNA polymerase beta, thumb domainPFAMPF14791DNA_pol_B_thumbcoord: 472..543
e-value: 5.9E-20
score: 71.1
IPR029398DNA polymerase beta, thumb domainGENE3D3.30.210.10coord: 474..542
e-value: 3.2E-21
score: 74.6
IPR028207DNA polymerase beta, palm domainPFAMPF14792DNA_pol_B_palmcoord: 357..465
e-value: 4.5E-32
score: 110.6
IPR019843DNA polymerase family X, binding sitePROSITEPS00522DNA_POLYMERASE_Xcoord: 387..406

Blast
[Close]
BLAST of TCONS_00012802-protein vs. Swiss-Prot (Human)
Match: DPOLL (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 1.894e-126
Identity = 213/533 (39.96%), Postives = 305/533 (57.22%), Query Frame = 0 
Query:   27 LNVCIIEQGLGKTRCNIFTDQLKKHGAAVSKSLDTDIEYLLVSKDMKLERLFKILKRKQIKDDIHIVSVDWLSASLVSGKLENLKPYEKFV-DRNNEKRDPSKQGND-SLNTKDEEDLTVRALPGSSSSSGVVLKPRTSYEELLALRNRKDLDSSPDEEEERTS------------PSDSKKDFTKVKSELPKGTWVCAKPSSSTNQKVNHNKHITEKLEVLQKTYENSKDKWRAMGYKKAINSIKNYSKSLSSFEEVKSLPFVGGRLAEKIWEIIETGHLRRLDHIDEKSELINKFAAVWGAGPSAAATWAAQGFESLEDLEKNADLTFQQKIGIKHYDDINQKMPREEVTEIEQHIRKIAEDVLPGIHMEICGSYRRGRSHCGDIDVLFSHPNDELRKSFLRAVLEKLKETNLITDDLICVNSE-EQRKYMGVCRLPRENAKFRRIDFIVAPFNEWPLALMHFTGSAHFNRSIRLLAKKKNMSLSEHALRKDVIR-VGGEKVNKGTSISISSEKDIFEYFGLDYLKPTDRD 543
            L   ++  G+G+ R  +F  Q+ +HG  +  +    + +++V + M  ER  ++L+  Q+     +V   WLS  L   +L ++  +  F+  R  +   PSK   D S+     E L   AL      +  V  P+ + E           D + D EE + S            P+  + D     +      WVCA+PSS   +  NHN HITEKLEVL K Y    DKWRA+GY KAIN++K++ K ++S++E  S+P +G R+AEKI EI+E+GHLR+LDHI E   ++  F+ +WGAG   A  W  QGF SLED+   A LT QQ IG+KHY D  ++MPREE TEIEQ ++K A+    G+    CGSYRRG++ CGD+DVL +HP+    +     +L+ L++   +TDDL+      +Q+KY+GVCRLP    + RR+D IV P++E+  AL++FTGSAHFNRS+R LAK K MSLSEHAL   V+R   G KV  G  +   +EKD+F   GL Y +P +RD
Sbjct:   44 LRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFIPSRYLDHPQPSKAEQDASIPPGTHEALLQTALSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSS--QKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
The following BLAST results are available for this feature:
BLAST of TCONS_00012802-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLL1.894e-12639.96DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1... [more]
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