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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00013689-protein ID=TCONS_00013689-protein|Name=TCONS_00013689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1183bp
MTDVIWQQHNYHRPEPQNSKVQLKHYDSDQPERIHFNVSDDKLTRNRFSN
QDTSANTFSTVNNIKTKSTPVNTTADTNHSLLLERRPDTVSTKWSIATDD
NQNPQLWDKSDHSEHNKENTQANMFTFENHWQSDGSWSMGNDDKSEHAIS
QPITMAGRRPEQYPGPLPQSVTSPTSADGQLGVHMVEYVLASSPGGHDLE
NRMKEMKLGNNMNNMDQARIVSQMPNGNIVSRKSPFDGDEPEDSQLQQVP
PQPTQSQIPPEAQPSEPQPTEESLFMSSQPPTNSNSRNQSPHPGNQQTEG
GAGLGTIIQQQQHSNAPSNAASPTQDLQQVPQNQVASPVPFDQQQQVAQQ
TNPDANTSFEQMNAGPQSPQTVPQQPNQAEVASPENSEVIQQQQAQAQQQ
QQAQQQGMNNQPQHFVFNQQQVAAMQQMQQNQYFVNAAAQGSSQDPYAAA
AAQGQEIRIPVVNAQGQTTMIHPQYAAAYGLQQYVFANQGNNPAFIQQQQ
QQQQQAQQAQQQQQMQSQDGRPPTTTPNSGQPGQQQPQPPQQQQQQQQQP
QQQQMQGQQIPAGYQVVQAPMNFQQFYDQHGNPVIINGRMAAPLSQVRMV
SPMVLNANGQPTVSPGIASGTSPNVQMYSQQQTQPQQQQPTQQQQQQQRP
GINLGYLSTGQLGPLPGQNAMQMQNGPVGVIGGHLQQTGTGPLQSPGGPR
NDFGAFGQAKRQGATPMYGTPGMVGSFNSLTVNTPLANSLSISNPNTSPL
HTQGPNSFEIGSPAASSRLSGYASLLNSNERRGGGGGGGYGGSSSLGSSL
FGSSTSGLYRRPGGGRDSGRSKLLEDFRNNRYPNLQLHDLQRHIVEFSQD
QHGSRFIQQKLERASVLEKSMVFNEILTAAYSLMTDVFGNYVIQKFFEFG
SPDQKMLLAQRIKGHVLPLALQMYGCRVIQKALETIPCDMPIHGELVREL
DGHVLKCVKDQNGNHVVQKCIECVDSNQLQFIIDAFKGQVVYALSTHPYG
CRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPD
DKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVD
GPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTY
GKHILAKLETFEKAYMQPTDLLFLPATTQIAPF Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0005488 | binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005488 |
binding |
| molecular_function |
GO:0003723 |
RNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 496..516 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 156..176 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 227..409 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 496..560 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 611..706 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 744..763 |
| IPR001313 | Pumilio RNA-binding repeat | SMART | SM00025 | pum_5 | coord: 839..874
e-value: 5.2E-5
score: 32.6
coord: 875..910
e-value: 1.2E-6
score: 38.1
coord: 985..1021
e-value: 1.7E-4
score: 30.9
coord: 1022..1057
e-value: 2.8E-9
score: 46.8
coord: 1101..1136
e-value: 7.2E-7
score: 38.8
coord: 911..948
e-value: 0.17
score: 21.0
coord: 1058..1093
e-value: 4.3E-6
score: 36.3
coord: 949..984
e-value: 9.4E-10
score: 48.4 |
| IPR001313 | Pumilio RNA-binding repeat | PFAM | PF00806 | PUF | coord: 1105..1130
e-value: 3.3E-6
score: 26.4
coord: 912..935
e-value: 1.0E-4
score: 21.7
coord: 950..983
e-value: 1.7E-9
score: 36.8
coord: 876..907
e-value: 5.9E-7
score: 28.7
coord: 994..1020
e-value: 1.3E-7
score: 30.8
coord: 843..865
e-value: 1.3E-4
score: 21.4
coord: 1060..1091
e-value: 7.0E-5
score: 22.2
coord: 1024..1055
e-value: 2.3E-7
score: 30.0 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 1097..1136
score: 9.084 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 839..874
score: 9.994 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 949..984
score: 10.577 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 911..948
score: 9.037 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 1058..1093
score: 9.247 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 985..1021
score: 9.317 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 1022..1057
score: 12.117 |
| IPR001313 | Pumilio RNA-binding repeat | PROSITE | PS50302 | PUM | coord: 875..910
score: 10.064 |
| IPR011989 | Armadillo-like helical | GENE3D | 1.25.10.10 | | coord: 817..1169
e-value: 9.3E-114
score: 379.5 |
| IPR033133 | Pumilio homology domain | PROSITE | PS50303 | PUM_HD | coord: 819..1162
score: 129.123 |
| IPR033712 | Pumilio, RNA binding domain | CDD | cd07920 | Pumilio | coord: 834..1158
e-value: 1.53595E-167
score: 500.581 |
| IPR016024 | Armadillo-type fold | SUPERFAMILY | 48371 | ARM repeat | coord: 820..1159 |
Blast
BLAST of TCONS_00013689-protein vs. Swiss-Prot (Human)
Match: PUM1 (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3) HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0 Identity = 278/350 (79.43%), Postives = 305/350 (87.14%), Query Frame = 0
Query: 818 SGRSKLLEDFRNNRYPNLQLHDLQRHIVEFSQDQHGSRFIQQKLERASVLEKSMVFNEILTAAYSLMTDVFGNYVIQKFFEFGSPDQKMLLAQRIKGHVLPLALQMYGCRVIQKALETIPCDMPIHGELVRELDGHVLKCVKDQNGNHVVQKCIECVDSNQLQFIIDAFKGQVVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLETFEKAYMQ 1167
SGRS+LLEDFRNNRYPNLQL ++ HI+EFSQDQHGSRFIQ KLERA+ E+ +VFNEIL AAY LM DVFGNYVIQKFFEFGS +QK+ LA+RI+GHVL LALQMYGCRVIQKALE IP D E+VRELDGHVLKCVKDQNGNHVVQKCIECV LQFIIDAFKGQV +ALSTHPYGCRVIQRILEHC DQT PIL ELH+HTE+L+QDQYGNYVIQHVLEHG P+DKS IV +RGNVL+LSQHKFASNV+EKCVTHASR ER+ LI+EVC DGPH ALY+MMKDQYANYVVQKMIDVAEP QRK++M KIRPH+ATLRKYTYGKHILAKL EK YM+
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ--QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQV-FALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKL---EKYYMK 1170
The following BLAST results are available for this feature:
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