TCONS_00014591-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014591-protein
Unique NameTCONS_00014591-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length145

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014591-protein ID=TCONS_00014591-protein|Name=TCONS_00014591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MKKNPAVSSSRRKSRKAHFAAPSSVRRKLMSAPLSKELRQKYSVRSMPVR
KDDEVVVTRGPFKSAQAGKVTSVYRKKWVLHIERIQREKVNGAAVNVGIH
ASKVEIVRLKMDKDRKKILDRKNKTKLQERAKGKHTEEDVAMSTE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008165XLOC_008165Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014591TCONS_00014591Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005756Ribosomal_L26/L24P_euk/arc
IPR005824KOW
IPR014722Rib_L2_dom2
IPR008991Translation_prot_SH3-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealTIGRFAMTIGR01080TIGR01080coord: 8..122
e-value: 1.5E-44
score: 149.0
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPFAMPF16906Ribosomal_L26coord: 8..122
e-value: 2.0E-38
score: 130.7
IPR005824KOWPFAMPF00467KOWcoord: 51..82
e-value: 2.9E-5
score: 23.8
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 1..127
e-value: 1.1E-38
score: 131.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..145
NoneNo IPR availableCDDcd06089KOW_RPL26coord: 52..106
e-value: 8.21964E-11
score: 52.9022
IPR008991Translation protein SH3-like domainSUPERFAMILY50104Translation proteins SH3-like domaincoord: 8..125

Blast
[Close]
BLAST of TCONS_00014591-protein vs. Swiss-Prot (Human)
Match: RL26 (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.021e-62
Identity = 93/145 (64.14%), Postives = 113/145 (77.93%), Query Frame = 0 
Query:    1 MKKNPAVSSSRRKSRKAHFAAPSSVRRKLMSAPLSKELRQKYSVRSMPVRKDDEVVVTRGPFKSAQAGKVTSVYRKKWVLHIERIQREKVNGAAVNVGIHASKVEIVRLKMDKDRKKILDRKNKTKLQERAKGKHTEEDVAMSTE 145
            MK NP V+S R K+RK HF APS +RRK+MS+PLSKELRQKY+VRSMP+RKDDEV V RG +K  Q GKV  VYRKK+V++IER+QREK NG  V+VGIH SKV I RLK+DKDRKKIL+RK K++   + KGK+ EE +    E
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
The following BLAST results are available for this feature:
BLAST of TCONS_00014591-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL262.021e-6264.1460S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
back to top