TCONS_00015934-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015934-protein
Unique NameTCONS_00015934-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015934-protein ID=TCONS_00015934-protein|Name=TCONS_00015934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1216bp
MYIKQVIIQGFRSYRDQTVIEPFSPKHNVVVGRNGSGKSNFFLAIQFVLS
DEFSHMRQEERQQLLHEGSGPRVVSAYVEIIFDNSDNRIPIEKDEITLRR
VIGSKKDQYFIDKKNVTRTDVMNLLESAGFSRSNPYYIVKQGKINQLATA
KDNDRLKLLREVAGTRVYDERKAESQNILKDTENKREKIEDLLKYIEERL
GTLETEKEELKQYQKWDKERRSLEYTIHDKELRETREKLELLDSSRQNEN
ERTTELQQEVQEATAKIEETNHQIKEAVDKCSICKLEKQQLDEERQEFIQ
QKTKLELEIKDLQEAIKEDNNAKETDKKQMSKLEEKIKTKEEALSKITPD
YNEKKSSEGDISARLKACEQRRTDLYSKQGRQSQFKNKDERDSWIKKELS
SIKANIAQKEKQIRRYKDEVSETKQRCVQIDAEIAERNENLEGRKGQMEK
THKDSSELKRKRDELLQARKELWRQENKLEVEMTTTRGDLNKAERDLRQS
MSKPVADGIDSVKQVVQQKNIQGVYGPLIENFTCNEKFFTAIDVTGGNKL
FNIIVDSDKTGSTILSHVNKMGLRGEITFMPLNRLKFSDVRYPNSSDVLP
MLHKVEYNDIFKPAMQLAFGKTLICRNQDVCSQFSKSHDIDTITLEGDKF
SRRGTLEGGFSSPNASRLLFQKRIWEYQKKLEEQESELGDVKTRLQQLDG
EITQVLSELQKLETTQIQLRNTYDQQRQDVRNLQKSRQAAEGGLAPKESA
LTNYQGELERLRGQMKSFQEELGTDLLSQLTTEDQEEVEQLNGEIAELKE
KLKVVFNERTKLEIESERIASYLHNNLYKRRDELKNKMEEVEVENKAEQH
SMKTIELETCNNELEKSNGQVTELNKRTKTLKAEVKSLQNVLEEWKTVER
EKQAAIEEDTKLMEKLANKKSLLLKKREECMRKIRELGSLPADAFEKYQK
TSIKALWKKLKEATDELKKYSHVNKKALDQFVSFSEQKEKLVKRKQEIAE
GYEAILDMMDVLEHRKHEAILFTFKQVSHNFSDIFKQLVSGGKAQLIMKR
AEAKESIEEDSQSQSTDQSSSQRSAKQYDEFSGISIKVSFTGKSAETLEM
NQLSGGQKTLVALTLIFAIQKCDPAPFYLFDEIDQALDPQYRKSVAAMIH
NLADKAQFITTTFRPELLESAENFYGVQFKNKVSHVLSITKEEAKDFVED
ECQDSSATDAATAKNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008897XLOC_008897Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015934TCONS_00015934Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010935SMC_hinge
IPR003395RecF/RecN/SMC_N
IPR024704SMC
IPR007809FlgN-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0051276chromosome organization
GO:0044780bacterial-type flagellum assembly
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044780 bacterial-type flagellum assembly
biological_process GO:0051276 chromosome organization
cellular_component GO:0005694 chromosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 448..478
NoneNo IPR availableCOILSCoilCoilcoord: 781..815
NoneNo IPR availableCOILSCoilCoilcoord: 960..980
NoneNo IPR availableCOILSCoilCoilcoord: 674..729
NoneNo IPR availableCOILSCoilCoilcoord: 824..908
NoneNo IPR availableCOILSCoilCoilcoord: 172..213
NoneNo IPR availableCOILSCoilCoilcoord: 232..280
NoneNo IPR availableCOILSCoilCoilcoord: 913..933
NoneNo IPR availableCOILSCoilCoilcoord: 399..433
NoneNo IPR availableCOILSCoilCoilcoord: 751..771
NoneNo IPR availableCOILSCoilCoilcoord: 288..343
NoneNo IPR availableGENE3D1.10.287.620coord: 667..825
e-value: 9.4E-10
score: 37.7
NoneNo IPR availableGENE3D3.40.50.300coord: 927..1205
e-value: 4.7E-25
score: 87.9
NoneNo IPR availableGENE3D3.40.50.300coord: 1..178
e-value: 4.1E-37
score: 127.3
NoneNo IPR availableGENE3D1.20.5.340coord: 224..357
e-value: 0.13
score: 11.5
NoneNo IPR availableGENE3D1.20.5.50coord: 384..525
e-value: 5.3E-6
score: 25.5
NoneNo IPR availableGENE3D1.20.5.730coord: 826..926
e-value: 0.39
score: 10.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 439..460
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1054..1077
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 728..749
NoneNo IPR availableCDDcd03272ABC_SMC3_eukcoord: 3..158
e-value: 8.33669E-97
score: 309.191
IPR010935SMCs flexible hingeSMARTSM00968SMC_hinge_2coord: 522..635
e-value: 2.2E-19
score: 80.4
IPR010935SMCs flexible hingePFAMPF06470SMC_hingecoord: 522..633
e-value: 1.8E-20
score: 73.3
IPR010935SMCs flexible hingeSUPERFAMILY75553Smc hinge domaincoord: 482..682
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 2..1183
e-value: 6.9E-49
score: 166.1
IPR024704Structural maintenance of chromosomes proteinPIRSFPIRSF005719SMCcoord: 1..1198
e-value: 5.7E-156
score: 518.8
IPR007809FlgN-like proteinSUPERFAMILY140566FlgN-likecoord: 896..984
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1089..1177
coord: 1..205

Blast
BLAST of TCONS_00015934-protein vs. Swiss-Prot (Human)
Match: SMC3 (Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2)

HSP 1 Score: 1216.06 bits (3145), Expect = 0.000e+0
Identity = 631/1214 (51.98%), Postives = 864/1214 (71.17%), Query Frame = 0
Query:    1 MYIKQVIIQGFRSYRDQTVIEPFSPKHNVVVGRNGSGKSNFFLAIQFVLSDEFSHMRQEERQQLLHEGSGPRVVSAYVEIIFDNSDNRIPIEKDEITLRRVIGSKKDQYFIDKKNVTRTDVMNLLESAGFSRSNPYYIVKQGKINQLATAKDNDRLKLLREVAGTRVYDERKAESQNILKDTENKREKIEDLLKYIEERLGTLETEKEELKQYQKWDKERRSLEYTIHDKELRETREKLELLDSSRQNENERTTELQQEVQEATAKIEETNHQIKEAVDKCSICKLEKQQLDEERQEFIQQKTKLELEIKDLQEAIKEDNNAKETDKKQMSKLEEKIKTKEEALSKITPDYNEKKSSEGDISARLKACEQRRTDLYSKQGRQSQFKNKDERDSWIKKELSSIKANIAQKEKQIRRYKDEVSETKQRCVQIDAEIAERNENLEGRKGQMEKTHKDSSELKRKRDELLQARKELWRQENKLEVEMTTTRGDLNKAERDLRQSMSKPVADGIDSVKQV--------VQQKNIQGVYGPLIENFTCNEKFFTAIDVTGGNKLFNIIVDSDKTGSTILSHVNKMGLRGEITFMPLNRLKFSDVRYPNSSDVLPMLHKVEYNDIFKPAMQLAFGKTLICRNQDVCSQFSKSHDIDTITLEGDKFSRRGTLEGGFSSPNASRLLFQKRIWEYQKKLEEQESELG-DVKTRLQQLDGEITQVLSELQKLETTQIQLRNTYDQQRQDVRNLQKSRQAAEGGLAPKESALTNYQGELERLRGQMKSFQEELGTDLLSQLTTEDQEEVEQLNGEIAELKEKLKVVFNERTKLEIESERIASYLHNNLYKRRDELKNKMEEVEVENKAEQHSMKTIELETCNNELEKSNGQVTELNKRTKTLKAEVKSLQNVLEEWKTVEREKQAAIEEDTKLMEKLANKKSLLLKKREECMRKIRELGSLPADAFEKYQKTSIKALWKKLKEATDELKKYSHVNKKALDQFVSFSEQKEKLVKRKQEIAEGYEAILDMMDVLEHRKHEAILFTFKQVSHNFSDIFKQLVSGGKAQLIMKRAEAKESIEED---SQSQSTDQSSSQRSAKQYDEFSGISIKVSFTGKSAETLEMNQLSGGQKTLVALTLIFAIQKCDPAPFYLFDEIDQALDPQYRKSVAAMIHNLADKAQFITTTFRPELLESAENFYGVQFKNKVSHVLSITKEEAKDFVEDEC 1202
            MYIKQVIIQGFRSYRDQT+++PFS KHNV+VGRNGSGKSNFF AIQFVLSDEFSH+R E+R  LLHEG+GPRV+SA+VEIIFDNSDNR+PI+K+E++LRRVIG+KKDQYF+DKK VT+ DVMNLLESAGFSRSNPYYIVKQGKINQ+ATA D+ RLKLLREVAGTRVYDERK ES +++K+TE KREKI +LLKYIEERL TLE EKEEL QYQKWDK RR+LEYTI+++EL ETR KL+ L + R+   E++ +L+   Q+A  K+E+   Q++E   K S  K EK+QL  ERQE I+Q+TKLEL+ KDLQ+ +  ++  ++   K+  KL EKI+ K++ L++  P +N  K  E    ARL    Q RTDLY+KQGR SQF +K+ERD WIKKEL S+   I  K++QI     ++ +T+    +   +  + +++L   K ++E+  +   E+K K+DEL   R  LWR+EN  +  +   R DL K ++ LR +  K + +GIDS+ +V        + Q    G +G ++ NF C   F+T ++VT GN+LF  IVDSD+  + IL   NKM L GE+TF+PLN+L   D  YP ++D +PM+ K+ YN  F  A +  FGKTLICR+ +V +Q +++  +D ITLEGD+ S RG L GG+     SRL  QK + + +++L E E++L  +++  +++++ EI Q+++++Q++ET Q + + + D    +++ L++ RQ +E    PK+ +L + +  L  +    +S + ELGTDLLSQL+ EDQ+ V+ LN EI +L+++ + + NER KLE    R+ +YL+ NL KR D+++ ++ E+         +  T ELE  N  ++ +  +  +L+      +A +K LQ  +E WK +E+E   AI  DTK +EK+ N++ +LLKK+EECM+KIRELGSLP +AFEKYQ  S+K L++KL++   ELKKYSHVNKKALDQFV+FSEQKEKL+KR++E+  GY++I+++M+VLE RK+EAI  TFKQVS NFS++F++LV GGKA L+MK+ + + S  +D      +S   S SQ S    D+F+G+ I+VSFTGK  E  EM QLSGGQK+LVAL LIFAIQKCDPAPFYLFDEIDQALD Q+RK+V+ MI  LA  AQFITTTFRPELLESA+ FYGV+F+NKVSH+  IT E AKDFVED+ 
Sbjct:    1 MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKNDVMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMKETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDLEDTEANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQQALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLDHFRRKGINQHVQNGYHGIVMNNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAYPETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSHRGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQIETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAELGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRLDQVEQELNELRETEGGTVLTATTSELEAINKRVKDTMARSEDLDNSIDKTEAGIKELQKSMERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTLSLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDT 1214          
The following BLAST results are available for this feature:
BLAST of TCONS_00015934-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMC30.000e+051.98Structural maintenance of chromosomes protein 3 OS... [more]
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