TCONS_00018145-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018145-protein
Unique Name	TCONS_00018145-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1086

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018145-protein ID=TCONS_00018145-protein|Name=TCONS_00018145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1086bp
MHDGSLKANIVEPEKKKGYTERLCEFYVKKPKLAFAISLGIQVSFLLATG
ALYLMNYNIFPYDFTQVPLNLEKDATKLRSDAFNFVTEDPRVNLLPTTAI
PQPERTIKASPLELIYQSKYKGGNILTPTNLKAVRDLEHKLIQAPSYERI
CHIDNNSRRQQDAKSNCSLPMSIIRLFDGTYGQPFHDPEFERITMILNLA
MNISHLRPLISYTLDTQSIIKPDRVFSQHLRSIVFNGLPLKGYKHGEDQK
GEQMKTLKINVVEAFGKMLSEKYESGIGDMNIYYMNMDLFFNAVESQVVW
DLLLAGGSLIFIFSFVWFQTGSLWITGWAVFGIITNFFGANLVYRIVLDF
RFIGIFHVLSVFMILGIGADDVFVFFNTWKLMEARNFSTLTEHLTETFRI
AAGAMFVTSLTTAAAFLASAASPLLGVSSFGVFSGILVIVNYMSVCIYFP
SVVVTYHYFWKDYRPFRCCSSKDKSTDRKLLAMDQNNAGGHVSEIQHDDA
PQDDMTKMFKAIVHWFETTYANRVVLHSKVKWIVMFLFASLTITFFVYAM
HLGPDEKQIQVWPKGTNWYDIRQLKLRAFEETGEGNNVIRIYTVWGLKLQ
DRTSCHFTDYKCKGRTVFDDNFDLNKPGCQVAVLDFCRRLKSLPKEKAEE
LHIRRSVATGQLEVSCFIDEMDKYFQSDYLEKLRQQLKYKLPLAENISFG
IPMDEQKTRLLMKTLPEIYNTSLLSPRYKRFFEVALGFWLSGGGRPENKF
DYFKYSSYMGGSLDPSVTNEQRDSIVARAQGGRYGNILRYVAVVVNTTLT
GPTLKYTEGLEASKKWEEYMEEEVKRMPTSCNKPFQCTPEWNEWHWLRVQ
GELLKGARIGILIGLTLAFPVLVFTTCNWIIGLLATLTIALITICVVGLI
PLVGWNLGVMESINLTLVVGLSVDYAVHLADGYVRCEFSDRKRRVKHMLG
HVGVSVLAGASTTLGASAFMLGSKILFFFQFGIFIFCTIGFSIVYALVVF
TIVIGLIGPQGDKGNVLSIVDYFKKKNSRDTTQSRNSRAELINNTESLTT
TPLKETGFSSLEDELKMDQKNENDTTKEQNKRIIKS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010183	XLOC_010183	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018145	TCONS_00018145	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003392	Ptc/Disp
IPR000731	SSD

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1640.10		coord: 795..1010 e-value: 7.8E-30 score: 103.2 coord: 248..457 e-value: 1.7E-16 score: 59.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1063..1086
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 304..456
None	No IPR available	SUPERFAMILY	82866	Multidrug efflux transporter AcrB transmembrane domain	coord: 833..1008
IPR003392	Protein patched/dispatched	PFAM	PF02460	Patched	coord: 870..1004 e-value: 9.6E-9 score: 33.8 coord: 347..540 e-value: 5.3E-15 score: 54.5
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 878..1006 score: 8.607
IPR000731	Sterol-sensing domain	PROSITE	PS50156	SSD	coord: 362..455 score: 15.612

Blast

[Close]

BLAST of TCONS_00018145-protein vs. Swiss-Prot (Human)
Match: DISP1 (Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 8.546e-27
Identity = 97/405 (23.95%), Postives = 183/405 (45.19%), Query Frame = 0

Query:  249 QKGEQMKTLKINVVEAFGKMLSEKYESGIGDMNIYYMNMDLFFNAVESQVVWDLLLAGGSLIFIFSFVWFQTGSLWITGWAVFGIITNFFGANLVYRIVLDFRFIGIFHVLSVFMILGIGADDVFVFFNTWKLME-ARNFSTLTEHLTETFRIAAGAMFVTSLTTAAAFLASAASPLLGVSSFGVFSGILVIVNYMSVCIYFPSVVVTYHYFWKDYRPFRCCSSKDKSTDRKLLAMDQNNAGGHVSEIQHDDAPQDDMTKMFKAIVHWFETTYANRVVLHSKVKWIVMFLFASLTITFFVYAMHLGPDEK-------QIQVWPKGTNW--YDIRQLKLRAFEETGEGNNV-IRIYTVWGLKLQDRTSCHFTDYKCKGRTVFDDNFDLNKPGCQVAVLDFCRRLKS 642
            +KGE M  + ++  E         + S  G   I  +   +  +  +  ++ D +    +++ +   +   T S++IT   +F II++   +  +YR+V  F F    ++ ++ +++GIGADD FV  + W   +  +  +  +E ++ T + AA +MFVTS TTAAAF A+  S +  +  FGV++G  ++VNY+ +  + P+VVV +  +  +   F C     +                H       +A +    K+   IV               K +++ +F F +LT+    Y + + P  K       + QV+     +  YD    KL  FE    G  + + I  +WG+  +D  +    + K KG+   D +F++  P  Q  +L FC++L++
Sbjct:  459 EKGESMMNIYLDNFE--------NWNSSDGVTTITGIEFGIKHSLFQDYLLMDTVYPAIAIVIVLLVMCVYTKSMFITLMTMFAIISSLIVSYFLYRVVFHFEFFPFMNLTALIILVGIGADDAFVLCDVWNYTKFDKPHAETSETVSITLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPAVVVLHERYLLNI--FTCFKKPQQQIYDNKSCWTVACQKCHKVLFAISEASRIFFEKVLPCIV--------------IKFRYLWLFWFLALTVG-GAYIVCINPKMKLPSLELSEFQVFRSSHPFERYDAEYKKLFMFERVHHGEELHMPITVIWGVSPEDNGN--PLNPKSKGKLTLDSSFNIASPASQAWILHFCQKLRN 836

HSP 2 Score: 108.227 bits (269), Expect = 1.174e-23
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 0

Query:  849 VQGELLKGARIGILIGLTLAFPVLVFTTCNWIIGLLATLTIALITICVVGLIPLVGWNLGVMESINLTLVVGLSVDYAVHLADGYVRCEFSDRKRRVKHMLGHVGVSVLAGASTTLGASAFMLGSKILFFFQFGIFIFCTIGFSIVYALVVFTIVIGLIGPQGDKGNV 1016
            +Q  L  G  I + + + +AF V++ TT N II L A ++IA      VG + L+GW L V+ES+ +++ VGLSVD+AVH    Y      DR+ +V   L  VG ++   A TT  A A M+ S +L + Q G F+   +  S  +A   F  +   +GPQG  G +
Sbjct:  976 LQDSLSDGTLIAMGLSVAVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTISVAVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRVGSAMAMAALTTFVAGAMMMPSTVLAYTQLGTFMMLIMCISWAFATFFFQCMCRCLGPQGTCGQI 1143

The following BLAST results are available for this feature:

BLAST of TCONS_00018145-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018145-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DISP1	8.546e-27	23.95	Protein dispatched homolog 1 OS=Homo sapiens GN=DI...	[more]

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TCONS_00018145-protein (polypeptide) - C. hemisphaerica