TCONS_00018620-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018620-protein
Unique NameTCONS_00018620-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1336

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018620-protein ID=TCONS_00018620-protein|Name=TCONS_00018620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1336bp
MADIAEMLKTLQRQKPPMDCPLCGKEYRSFSGISYHIIKFHPNGQATQPT
TPYNTSFSNFNTPASLKKRPLSYADSQRMVEFDIKGSLVRSLLSDQLSIE
IESEKTEQTEAGEENATALPEIKTCPKSPAKSTPRKKWRGKSRLVHHKQR
SALVEMKRNLQLQEAKKVTLPVAMYSIIPEEDIMEKDVPERKSYFRYIDR
TSEELDEDVEYGMDEEDYIWLEGLNDERKNNSLAPVNPEIFEMLMDRLEK
ESHFETRTVTGDPYNMIDEDAVCSICCDGECSNSNSILFCDMCNLAVHQE
CYGVPYIPEGQWLCRKCLQSPSKPVSCVLCPTKSGAFKQTDNNQWAHVVC
ALWIPEVCFANTVFLEPIDSIANIPPARWKLVCYICKKKSGACIQCFKTN
CYTAFHVTCAQQGGLHMKIEAGRLENGQPTVKKFAYCDVHMPKDAAPGFG
TPSHSDYASDEDSDTSCHSKVSTHSKASNASALKKSAAYQTPSAKLKEVQ
KKLLEKQSFKMPAVHIPFVPAHRLTKIVSKVAIAKKSQFIQQLQSYWMLK
RQSRNGVPLLRRLQVNTGSGINRNQREQTLEEWSQSKELKEQLRYWQQLR
HDLERVRLLIELIRKREKIKKEQYRLKQQLVDMKLKPQQLEMERTLMILQ
ERDTTNIFSEPVKPEEAPDYHDFIKKPMDFSTMRHKLAEYEYMNFEQFET
DFNLMIQNCLSFNHEDTVYYRTALRMRTQCKPILKAAHKRIKQACIDPQT
GIHAEQPQPAAATETTPEEEITKMIENPFMTIDEKIEDLEIKLEITNGIK
SALTRLAQQKLLRKEISKLKRQKRRIDNPFSPEHDENGETASSSNKLIHR
FKKRGRKRGYHHDSTTTDTKYNGEVKTPDDDSETIHEDQENNLPNGDVND
MNGGGLDTPKKNENGGPVGSLTFTSPEKIVQNPSPGRSRRSGILFKKKQY
QPAKPSPLVLYTTTTSEDEQGSNSSSSLKLRLRVDSKSKGSATSSGEESA
TTRSKTNLHRTRSHDPTVKSSCSGDALTNGGDVSPRKRSSGRTRSPHKRH
TRDHTMSAPTLNGSTQHKDEEAIDDDCFVDGVEDATEDSTSSPRKRTYTG
SSAYSDTDGPPNEIGPHRRRSHKRGRQKRPKLSFRQEFAHLEGLNDIKYG
VYMVNEKETDLLDPKIEPKVLDFLSLIWAKCKGYPSYPALTIDPSMPRCG
FQSNGVPIPIPPLDVLEMNDELDRYLILFFDAKRTWQWLPRDKIEPLGID
SRLDEVKLVESKKPSMRKNVQEAYKRAIGFRRRLEIGENSDEELLPSPTE
HHDEEGFAQFDDXLKSLLCVKTFKKLTNEPSGSDVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010410XLOC_010410Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018620TCONS_00018620Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR001965Znf_PHD
IPR000313PWWP_dom
IPR013083Znf_RING/FYVE/PHD
IPR019542Enhancer_polycomb-like_N
IPR013087Znf_C2H2_type
IPR018359Bromodomain_CS
IPR019786Zinc_finger_PHD-type_CS
IPR034732EPHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 667..683
score: 52.17
coord: 683..701
score: 24.71
coord: 701..720
score: 35.22
IPR001487BromodomainSMARTSM00297bromo_6coord: 631..739
e-value: 6.2E-28
score: 108.8
IPR001487BromodomainGENE3D1.20.920.10coord: 569..756
e-value: 3.9E-32
score: 110.5
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 649..723
e-value: 5.5E-22
score: 77.5
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 650..720
score: 19.468
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 623..738
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 272..318
e-value: 7.5E-8
score: 42.1
coord: 382..441
e-value: 2.4E-6
score: 37.1
IPR000313PWWP domainSMARTSM00293PWWP_4coord: 1171..1248
e-value: 2.1E-18
score: 77.1
IPR000313PWWP domainPFAMPF00855PWWPcoord: 1175..1277
e-value: 4.8E-10
score: 39.7
IPR000313PWWP domainPROSITEPS50812PWWPcoord: 1173..1250
score: 9.398
NoneNo IPR availablePFAMPF13832zf-HC5HC2H_2coord: 326..440
e-value: 4.0E-35
score: 120.2
NoneNo IPR availablePFAMPF13831PHD_2coord: 285..317
e-value: 3.3E-14
score: 52.0
NoneNo IPR availableGENE3D2.30.30.140coord: 1176..1286
e-value: 1.5E-19
score: 69.7
NoneNo IPR availableCDDcd15572PHD_BRPFcoord: 270..323
e-value: 2.78623E-35
score: 129.273
NoneNo IPR availableCDDcd15670ePHD_BRPFcoord: 327..440
e-value: 1.28267E-76
score: 248.404
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 1175..1276
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 376..515
e-value: 3.1E-5
score: 23.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 257..325
e-value: 2.6E-13
score: 49.0
IPR019542Enhancer of polycomb-like, N-terminalPFAMPF10513EPL1coord: 102..251
e-value: 3.4E-23
score: 82.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 20..41
IPR018359Bromodomain, conserved sitePROSITEPS00633BROMODOMAIN_1coord: 655..712
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 273..317
IPR034732Extended PHD (ePHD) domainPROSITEPS51805EPHDcoord: 324..441
score: 35.313
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 270..320
score: 10.14
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 265..334

Blast
BLAST of TCONS_00018620-protein vs. Swiss-Prot (Human)
Match: BRPF1 (Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2)

HSP 1 Score: 733.021 bits (1891), Expect = 0.000e+0
Identity = 406/852 (47.65%), Postives = 549/852 (64.44%), Query Frame = 0
Query:    3 DIAEMLKTLQRQKPPMDCPL--CGKEYRSFSGISYHIIKF-HPN---------------GQATQPTTPYNTSFSNFNTPASLKKRPLSYADSQRMVEFDIKGSLVRSLLSDQLSIEIESEKTEQTEAGEENATALPEIKTCPKSPAKSTPRKKWRGKSRLVHHKQRSALVEMKRNLQLQEAKKVTLPVAMYSIIPEEDIMEKDVPER-KSYFRYIDRTSEELDEDVEYGMDEEDYIWLEGLNDERKNNSLAPVNPEIFEMLMDRLEKESHFETRTVTGDPYNMIDEDAVCSICCDGECSNSNSILFCDMCNLAVHQECYGVPYIPEGQWLCRKCLQSPSKPVSCVLCPTKSGAFKQTDNNQWAHVVCALWIPEVCFANTVFLEPIDSIANIPPARWKLVCYICKKK-SGACIQCFKTNCYTAFHVTCAQQGGLHMKIEAGRLENGQPT---VKKFAYCDVHMPKDAAPGFGTPSHSDYASDEDSDTSCHSKVSTHSKASNASALKKSAAYQTPSAKLKEVQKKLLEKQSFKMPAVHIPFVPAHRLTKIVSKVAIAKKSQFIQQLQSYWMLKRQSRNGVPLLRRLQVNTGSGINRNQ--REQTLEEWSQSKELKEQLRYWQQLRHDLERVRLLIELIRKREKIKKEQYRLKQQLVDMKLKPQQLEMERTLMILQERDTTNIFSEPVKPEEAPDYHDFIKKPMDFSTMRHKLAEYEYMNFEQFETDFNLMIQNCLSFNHEDTVYYRTALRMRTQCKPILKAAHKRIKQACIDPQTGIHAEQPQPAAA------TETTPEEEITKMIEN-PFMTIDEKIEDLEIKLEITNGIKSALTRLAQQKLLRKEISKLKRQ 822
            D+      L+  KPP +CP+  C K Y+S+SGI YH+  + H N               G+ ++P    + S S  +   S  +  +SYA +QRMVE D+ G + R  + D L  ++ SE  E  E   EN +     K   ++PA +TP+    GK +   +K++        +  +  +    LP  +Y  + E+D    D P R  SY+RYI++++EELDE+VEY MDEEDYIWL+ +N+ RK   ++P+  EIFE LMDRLEKES+FE+    GDP  ++DEDAVC IC DGEC NSN ILFCDMCNLAVHQECYGVPYIPEGQWLCR+CLQSPS+ V C LCP K GAFKQTD+ +WAHVVCALWIPEVCFANTVFLEPIDSI +IPPARWKL CYICK++ SGACIQC K NCYTAFHVTCAQQ GL+MK+E  R      T   V+K AYCD+H P  +A      SHS+   DE        +     K  ++  +KK+ A      K+K+ +K L EK++   P V +P +P HRL+KI +++ I +KSQF+Q+L SYW LKRQSRNGVPLLRRLQ +  S  N +Q  R+   + W+    LKEQL+ WQ+LRHDLER RLL+ELIRKREK+K+E  +++Q  ++M+L P  + + +TL  LQE+DT NIFSEPV   E PDY D IKKPMDF TM+  L  Y Y+NF+ FE DFNL++ NCL +N +DT++YR A+R+R Q   +L+ A ++ ++  ID +TG+H   P   A       TE   EEE   ++EN   + ++E+++ L  +L+  N  K ++ R  + K+++KE++ L+R+
Sbjct:    6 DVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQ--SPGREVMSYAQAQRMVEVDLHGRVHRISIFDNL--DVVSEDEEAPEEAPENGSN----KENTETPA-ATPKS---GKHK---NKEKRKDSNHHHHHNVSASTTPKLPEVVYREL-EQDT--PDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHN-KGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEDE-------DEEEDEGKGWSSEKVKKAKAKS--RIKMKKARKILAEKRA-AAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWA----LKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHI--PHSLAGDEATHHTEDAAEEERLVLLENQKHLPVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRK 822          

HSP 2 Score: 154.066 bits (388), Expect = 1.197e-37
Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 0
Query: 1171 LDFLSLIWAKCKGYPSYPALTIDPSMPRCGFQSNGVPIPIPPLDVLEMNDELDR------YLILFFDAKRTWQWLPRDKIEPLGIDSRLDEVKLVESKKPSMRKNVQEAYKRAIGFRRRLEIGENSDE 1292
            LD L L+WAKC+GYPSYPAL IDP MPR G   +GVPIP+PPL+VL++ +++ +      YL+LFFD KRTWQWLPR K+ PLG++  LD+ K++E +K ++RK+VQ AY RA+  R +++ GE S E
Sbjct: 1083 LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQ-GEQSSE 1209          
The following BLAST results are available for this feature:
BLAST of TCONS_00018620-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRPF11.197e-3747.65Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2[more]
back to top