TCONS_00019260-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019260-protein
Unique NameTCONS_00019260-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019260-protein ID=TCONS_00019260-protein|Name=TCONS_00019260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MADATLEEDFIPDYEETSDNEAAAEEAAQSTEPAKKDVKGTYVSIHSSGF
RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTA
VFVLATLQQLEPVDGQVSVLVMSHTRELAFQVSKEYERFSKYLNNIKVAV
FFGGLSVKKDEQVLKTNCPNIVVGTPGRILALARDKVLNLKHIKHFILDE
CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEMRTVCKKFMQDPM
EVYVDDETKLTLHGLTQHYCKLKDSEKNRKLFDLLDALEFNQVIIFVKSV
QRCSALSGLLVEQNFPAIAIHRSMPQEERISRYRQFKDFQKRILVATNLF
GRGMDIERVNIVVNYDMPEDSDTYLHRVARAGRFGTKGLAISFVADEEDA
KTLNDVQDRFEVNVSELPVEIDVSTYIEGYEAQR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010813XLOC_010813Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019260TCONS_00019260Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 304..385
e-value: 2.4E-25
score: 100.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 277..385
e-value: 7.8E-25
score: 87.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 280..425
score: 21.732
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 67..268
e-value: 1.7E-51
score: 187.0
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 79..252
score: 25.926
NoneNo IPR availableGENE3D3.40.50.300coord: 260..423
e-value: 1.3E-40
score: 138.2
NoneNo IPR availableGENE3D3.40.50.300coord: 45..259
e-value: 4.2E-54
score: 182.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableCDDcd00268DEADccoord: 50..252
e-value: 4.72955E-86
score: 262.806
NoneNo IPR availableCDDcd00079HELICccoord: 265..393
e-value: 1.07059E-35
score: 127.739
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 73..239
e-value: 6.5E-38
score: 130.1
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 48..76
score: 9.458
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 117..399

Blast
[Close]
BLAST of TCONS_00019260-protein vs. Swiss-Prot (Human)
Match: DX39B (Spliceosome RNA helicase DDX39B OS=Homo sapiens GN=DDX39B PE=1 SV=1)

HSP 1 Score: 755.747 bits (1950), Expect = 0.000e+0
Identity = 361/428 (84.35%), Postives = 396/428 (92.52%), Query Frame = 0 
Query:    1 MADATLEEDFIPDYEETSDNEAAAEEAAQSTEPAKKDVKGTYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMSHTRELAFQVSKEYERFSKYLNNIKVAVFFGGLSVKKDEQVLKTNCPNIVVGTPGRILALARDKVLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEMRTVCKKFMQDPMEVYVDDETKLTLHGLTQHYCKLKDSEKNRKLFDLLDALEFNQVIIFVKSVQRCSALSGLLVEQNFPAIAIHRSMPQEERISRYRQFKDFQKRILVATNLFGRGMDIERVNIVVNYDMPEDSDTYLHRVARAGRFGTKGLAISFVADEEDAKTLNDVQDRFEVNVSELPVEIDVSTYIE 428
            MA+  ++ + + DYE+     AA  + A++  PAKKDVKG+YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD++CQAKSGMGKTAVFVLATLQQLEPV GQVSVLVM HTRELAFQ+SKEYERFSKY+ N+KVAVFFGGLS+KKDE+VLK NCP+IVVGTPGRILALAR+K LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE+R VC+KFMQDPME++VDDETKLTLHGL Q+Y KLKD+EKNRKLFDLLD LEFNQV+IFVKSVQRC AL+ LLVEQNFPAIAIHR MPQEER+SRY+QFKDFQ+RILVATNLFGRGMDIERVNI  NYDMPEDSDTYLHRVARAGRFGTKGLAI+FV+DE DAK LNDVQDRFEVN+SELP EID+S+YIE
Sbjct:    1 MAENDVDNELL-DYEDDEVETAAGGDGAEA--PAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
The following BLAST results are available for this feature:
BLAST of TCONS_00019260-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DX39B0.000e+084.35Spliceosome RNA helicase DDX39B OS=Homo sapiens GN... [more]
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