TCONS_00020303-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020303-protein
Unique Name	TCONS_00020303-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	465

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020303-protein ID=TCONS_00020303-protein|Name=TCONS_00020303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MSRIKYKNFILSVVSLFLVAAFIFSGGDFHPKIKLQRIEIVSRERRYSFR
RENATSVSNSIKLLEKDFQDRFQQLVENLQEDDESYKSLLKTTLDDYVTQ
KTCTPQQNIIFLKTHKTGSSTLTNILNRYADINNLRMLIPSGKQNRFDWP
NKFTPFSADVRLLGPETKANMLVNHARFSKESMQQMISKPTKFITILRNP
VTQFDSLFHYEGFDKLLSIQRKYRAMDIFLSSPKHYYQRLLRKRETPEAL
PLLRNSMLYDLGFTFHERPRGDDSDARVGKAIQEIDETFDMVLLMDYFDE
SLVLLMNELCWGFEDIIYMKHNVRAKRKNVSTKTADRIRKWNSADWELYK
HFNKTFWNKIQKYGSAKFAKDLREFRERNNELVKNCQIKSEDTLPPFSTV
KQYKLGGNVRQEYQSLCEKILLSEVEYLQRFRDQYELEFKKSSKNDSSRV
QREILSRMQNLVPEF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011396	XLOC_011396	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020303	TCONS_00020303	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009729	Gal-3-0_sulfotransfrase
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0009247	glycolipid biosynthetic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005794	Golgi apparatus
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0001733	galactosylceramide sulfotransferase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009247	glycolipid biosynthetic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0001733	galactosylceramide sulfotransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009729	Galactose-3-O-sulfotransferase	PFAM	PF06990	Gal-3-0_sulfotr	coord: 100..431 e-value: 3.2E-77 score: 260.0
None	No IPR available	GENE3D	3.40.50.300		coord: 80..393 e-value: 5.3E-9 score: 35.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 99..231

Blast

[Close]

BLAST of TCONS_00020303-protein vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.016e-55
Identity = 121/348 (34.77%), Postives = 177/348 (50.86%), Query Frame = 0

Query:  103 CTPQQNIIFLKTHKTGSSTLTNILNRYADINNLRMLIPSGKQNRFDWPNKFT-PFSADVRLLGPETKANMLVNHARFSKESMQQMISKPTKFITILRNPVTQFDSLFHYEGFDKLLSIQRKYRAMDI---FLSSPKHYYQRLLRKRETPEAL--PLLRNSMLYDLGFTFHERPRGDDSDARVGKAIQEIDETFDMVLLMDYFDESLVLLMNELCWGFEDIIYMKHNVR--AKRKNVSTKTADRIRKWNSADWELYKHFNKTFWNKIQKYGSAKFAKDLREFRERNNELVKNC----------QIKSEDTLP--PFST--VKQYKLGGNVRQEYQSLCEKILLSEVEYL 428
            C P++NI+FLKTHKT SSTL NIL R+   + L+   P+G+ N FD+P  F      D R   P    N++ NH RF  + ++ ++     FIT+LR+P   F+S FHY  F  ++ +  K  A D    FL  P  YY         P       LRN + +DLG+        D S  +V + I E++  F +VLL +YFDESLVLL + LCW  ED++Y K N R  +    +S +   R   WN  D  LY+HFN +FW K++ +G  + A+++   R  N  +   C           I+ E   P  P  T  +  Y L  ++ Q +  LC ++L  E++YL
Sbjct:   72 CQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPNGR-NDFDYPTFFARSLVQDYR---PGACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHY--FGPVVPLTWKLSAGDKLTEFLQDPDRYYD--------PNGFNAHYLRNLLFFDLGYDNSL----DPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICIDGGHAVDAAAIQDEAMQPWQPLGTKSILGYNLKKSIGQRHAQLCRRMLTPEIQYL 401

The following BLAST results are available for this feature:

BLAST of TCONS_00020303-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020303-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
G3ST1	1.016e-55	34.77	Galactosylceramide sulfotransferase OS=Homo sapien...	[more]

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TCONS_00020303-protein (polypeptide) - C. hemisphaerica