TCONS_00020441-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020441-protein
Unique NameTCONS_00020441-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020441-protein ID=TCONS_00020441-protein|Name=TCONS_00020441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MSDRKKSQSGIIEGKDRRERIQKWFNHFQQLLGQEPVIDDENEIIQTVFD
DLDFKTGEFTIDEYKKAKDRISLNKAPGPDNIPLEVIKKCNLEDILLNIA
KRLLLNHDKPSQWSTSNIIPVPKKGDLSKTGNYRGISLNAISARLVNRMM
LNRIQPKLDKNLRSNQNGFRPGRSTQSQILALRRLWIEGVKARHLPAVIL
FLDFRKAFDSIHRGKMLKVLAAYGIPNELINTIDILYKDTRAKVVSTDGE
TEYFNIVAGVLQGDTLAPYLFIIILDYVTVERANRTGSTSQQASIILCRF
KISRISQKSVTMALKMPTFDRNSKFTG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011484XLOC_011484Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020441TCONS_00020441Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 3..300
e-value: 1.8E-12
score: 46.8
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 115..278
e-value: 5.41978E-36
score: 129.719
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 39..279
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 121..286
e-value: 1.8E-29
score: 102.8
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 102..327
score: 8.917

Blast
[Close]
BLAST of TCONS_00020441-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.874e-20
Identity = 65/205 (31.71%), Postives = 103/205 (50.24%), Query Frame = 0 
Query:   75 KAPGPDNIPLEVIKKCNLEDI--LLNIAKRLLLNHDKPSQWSTSNIIPVPKKG-DLSKTGNYRGISLNAISARLVNRMMLNRIQPKLDKNLRSNQNGFRPGRSTQSQILALRRLWIEGVKARHLPAVILFLDFRKAFDSIHRGKMLKVLAAYGIPNELINTIDILYKDTRAKVVSTDGETEYFNIVAGVLQGDTLAPYLFIIILD 276
            K+PGPD    E  ++   E +  LL + + +      P+ +  ++II +PK G D +K  N+R ISL  I A+++N+++ NRIQ  + K +  +Q GF PG      I     +     +A+    VI+ +D  KAFD I +  MLK L   GI    +  I  +Y    A ++    + E F +  G  QG  L+P LF I+L+
Sbjct:  469 KSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLE 673
The following BLAST results are available for this feature:
BLAST of TCONS_00020441-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF23.874e-2031.71LINE-1 retrotransposable element ORF2 protein OS=H... [more]
back to top