TCONS_00022976-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022976-protein
Unique Name	TCONS_00022976-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	281

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022976-protein ID=TCONS_00022976-protein|Name=TCONS_00022976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MSFSRDKPSEWMHVELKRFKNQLPINRPSKKSVDKSLSIVKSSLVGLAKH
QFELVVTSLVHYIKDIPTINLLPIEQQPLAIQSNLIVVTTIEHCFEKHSE
ESSSLSDETVKRQLLNTLCSLIIHPDAFNEANQKVGRHVGNIIYFISKHH
FSSVFSRIVERLYSLVENNEDSTIADNLELIRYLHVPIEGLKCLFEECGK
HFKFLKKYSQQVVLKGLCKSIWNWIETYPEQFCNIYKNPNTQLSELSEKL
FQLVENWSENSKKRSISWPLQGLLLLLSPVC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012908	XLOC_012908	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022976	TCONS_00022976	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 29..268 e-value: 8.9E-6 score: 24.2
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 87..257

Blast

[Close]

BLAST of TCONS_00022976-protein vs. Swiss-Prot (Human)
Match: NF1 (Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 2.475e-46
Identity = 87/274 (31.75%), Postives = 157/274 (57.30%), Query Frame = 0

Query:    7 KPSEWMHVELKRFKNQLPINRPSKKSVDK-SLSIVKSSLVGLAKHQFELVVTSLVHYIKDIPTINLLPIEQQPLAIQSNLIVVTTIEHCFEKHSEESSSLSDETVKRQLLNTLCSLIIHPDAFNEANQKVGRHVGNIIYFISKHHFSSVFSRIVERLYSLVENNEDSTIADNLELIRYLHVPIEGLKCLFEECGKHFKFLKKYSQQVVLKGLCKSIWNWIETYPEQFCNIYKNPNTQLSELSEKLFQLVENWSENSKKRSISWPLQGLLLLLSP 279
            +P EW+   + RF  QLPI    + +  K S    K  L+ ++K++F LV++ L   +K++  + +     +     S LI++ T+E C     +++  L +  + +QLL  +C  +      N+   ++      +++ +S ++F++VFSRI  RL  L   +ED+    ++EL++Y++V    LK L +E    FK LKK +Q  V+  L K+ WNW+E YP++F  +Y+ P T ++E +EKLF LV+ ++E++K+++  WPLQ +LL+L P
Sbjct:    5 RPVEWVQAVVSRFDEQLPIKTGQQNTHTKVSTEHNKECLINISKYKFSLVISGLTTILKNVNNMRIFGEAAEKNLYLSQLIILDTLEKCLAGQPKDTMRLDETMLVKQLLPEICHFLHTCREGNQHAAELRNSASGVLFSLSCNNFNAVFSRISTRLQELTVCSEDNVDVHDIELLQYINVDCAKLKRLLKETAFKFKALKKVAQLAVINSLEKAFWNWVENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCP 278

The following BLAST results are available for this feature:

BLAST of TCONS_00022976-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022976-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NF1	2.475e-46	31.75	Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2	[more]

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TCONS_00022976-protein (polypeptide) - C. hemisphaerica