TCONS_00023274-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023274-protein
Unique NameTCONS_00023274-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023274-protein ID=TCONS_00023274-protein|Name=TCONS_00023274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MAAPAVQKRDGSGTYTFSSRPHAIQQRKKYRDPYEKENQAQSMYGNIMYD
RRIVRGNTYAQHILPVSSQPDPIEIQKQQEARRRAIARKRAKQHLKSQTP
EPVDGRKHIDVQTELYLEELTDRVEEADISTQTDAFLDRPPTPLFIPAKT
GIDVATQILQGELFDFDLEVKPILEVLVGKTVEQSLLEVMEEEELANLRA
QQRRFEELRNAELVETQRLEEQERRHREEKERRMRQQMEVLKKEKETTDK
LAARAFAQSYLQDLVPSVFGTLHDHGYFYDPVERDVETQFMPWLMESVTV
ELNKARVARAVLDSIIRDTVTNRFEVYNKLDEEAEQKIRAVIAAATQAMQ
PITPLPDKESGESEEVTKDEGSAGDDKPQQPESESTNQEDTGAEEPTPPD
SPPKQDGGDTAE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013084XLOC_013084Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023274TCONS_00023274Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009290Radial_spoke_3
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 216..247
NoneNo IPR availableCOILSCoilCoilcoord: 191..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..412
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
IPR009290Radial spoke 3PFAMPF06098Radial_spoke_3coord: 44..324
e-value: 4.7E-133
score: 442.8

Blast
[Close]
BLAST of TCONS_00023274-protein vs. Swiss-Prot (Human)
Match: RSPH3 (Radial spoke head protein 3 homolog OS=Homo sapiens GN=RSPH3 PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 5.920e-128
Identity = 209/315 (66.35%), Postives = 255/315 (80.95%), Query Frame = 0 
Query:   14 TYTFSSRPHAI-QQRKKYRDPYEKENQAQSMYGNIMYDRRIVRGNTYAQHILPVSSQPDPIEIQKQQEARRRAIARKRAKQHLKSQTPEPVDGRKHIDVQTELYLEELTDRVEEADISTQTDAFLDRPPTPLFIPAKTGIDVATQILQGELFDFDLEVKPILEVLVGKTVEQSLLEVMEEEELANLRAQQRRFEELRNAELVETQRLEEQERRHREEKERRMRQQMEVLKKEKETTDKLAARAFAQSYLQDLVPSVFGTLHDHGYFYDPVERDVETQFMPWLMESVTVELNKARVARAVLDSIIRDTVTNRFEVY 327
            TYT++SRP A+  QR +YRD   + ++    YGNIMYDRR++RGNTYA    P+  +PD +E+Q+Q+EAR+RA+ARK+A++ L+ QTPEPV+GRKH+DVQTELYLEE+ DR+ E D+  QTDAFLDRPPTPLFIPAKTG DVATQIL+GELFDFDLEVKP+LEVLVGKT+EQSLLEVMEEEELANLRA QR +EELRN+E  E QRLEEQERRHREEKERR +QQ E++ K  ET+ K+AARAFAQ YL DL+PSVFG+L D GYFYDP+ERD+E  F+PWLM  V   +  + V R VLD +IR+ V  R  +Y
Sbjct:  157 TYTYTSRPRALPCQRSRYRDSLTQPDEEPMHYGNIMYDRRVIRGNTYALQTGPLLGRPDSLELQRQREARKRALARKQAQEQLRPQTPEPVEGRKHVDVQTELYLEEIADRIIEVDMECQTDAFLDRPPTPLFIPAKTGKDVATQILEGELFDFDLEVKPVLEVLVGKTIEQSLLEVMEEEELANLRASQREYEELRNSERAEVQRLEEQERRHREEKERRKKQQWEIMHKHNETSQKIAARAFAQRYLADLLPSVFGSLRDSGYFYDPIERDIEIGFLPWLMNEVEKTMEYSMVGRTVLDMLIREVVEKRLCMY 471
The following BLAST results are available for this feature:
BLAST of TCONS_00023274-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSPH35.920e-12866.35Radial spoke head protein 3 homolog OS=Homo sapien... [more]
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