TCONS_00023501-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00023501-protein
Unique Name	TCONS_00023501-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	443

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00023501-protein ID=TCONS_00023501-protein|Name=TCONS_00023501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MIKIEARILHRSVFIPEEKIFCEIVFTNTAKKDHVSAAKQLSHQRHSSDT
RVLAPERWSKNMIMDAKVSSDQSVTVAYASAQLYCQCNLNERKYRMPLNA
IESKNDRSARHTSFSPDQGERGHCLLKTEANILFCDLTLKPGESKKFEYK
EVLPANIPPSYRGQDIKMNYKVCIGVGRIGKPLTLIRLPFRVIELKGIFK
ALKQKAKEQEPVRDTETEVTDNLITGQNPFLQESESQKYSKLDVAMDALT
AFTVKRNLNTYNIHSVNGAVGRFCLSKHYYRLGEDILGTFDFQNSPIPCV
KYVVSLQCEEKMSKNCMIIPSASEPVHYNTLSRHEECCYSASKSNFLIPI
PITATEEFTHKLVSVHWRLHFEFTIIKIDNKNKSTDSLNNTESNTPLKRQ
YAGIPNTLKTELMLWELPVHVVATNPIQASLMMQAESKQTVMI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013208	XLOC_013208	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00023501	TCONS_00023501	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014848	Rgp1

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014848	Reduced growth phenotype protein 1	PFAM	PF08737	Rgp1	coord: 123..193 e-value: 7.2E-20 score: 71.5 coord: 209..375 e-value: 1.2E-18 score: 67.5

Blast

[Close]

BLAST of TCONS_00023501-protein vs. Swiss-Prot (Human)
Match: RGP1 (RAB6A-GEF complex partner protein 2 OS=Homo sapiens GN=RGP1 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.257e-75
Identity = 145/451 (32.15%), Postives = 220/451 (48.78%), Query Frame = 0

Query:    1 MIKIEARILHRSVFIPEEKIFCEIVFTNTAKKDHVSAAKQLSHQRHSSDTRVLAPERWSKNMIMDAKVSSDQSVTVAYASAQLYCQCNLNERKYRMPLNAIESKNDRSARHTSFSPDQGERGHCLLKTEANILFCDLTLKPGESKKFEYKEVLPANIPPSYRGQDIKMNYKVCIGVGRIGKPLTLIRLPFRVIELKGIFKALKQKAKEQEPVRDTETEVTDNLITGQNPFLQESESQKYSKL--DVAMDALTAFTVKRNLNTYNIHSVNGAVGRFCLSKHYYRLGEDILGTFDFQNSPIPCVKYVVSLQCEEKMS------KNCMIIPSASEPVHYNTLSRHEECCYSASKSNFLIPIPITATEEFTHKLVSVHWRLHFEFTIIKIDNKNKSTDSLNNTESNTPLKRQYAGIPNTLKTELMLWELPVHVVATNPIQASLMMQAESKQTVMI 443
            MI++ A +    VF+  E + C +  TN       SA+ +                                   +A+ASAQ++CQ + +E +  +P       + +    T F P +GERG C+L T   ILFCDL L PGESK + Y EVLP   PPS+RGQ +K  YK+ IG  R+  P+TL+R+P RV+ L G+           + VR  +    D  +   +PFL+E E  K      ++A + L A T  R+L+ YNI    G VG F + K  YRLGED++GT +     + C+++ VSLQ EE++       +    +PS S   H    +RH+E C   ++++F +PIP+++T  F   +VS+ WRLHFEF    + ++      L   E   P    + G P  +  +   W+LP+ V+ T+P  AS      S  T+ I
Sbjct:    1 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSE----------------------------------ALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGL-----------QDVRFPQ----DEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTH----ARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEF----VTSREPGLVLLPPVEQPEPTT--WTG-PEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 391

The following BLAST results are available for this feature:

BLAST of TCONS_00023501-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00023501-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RGP1	1.257e-75	32.15	RAB6A-GEF complex partner protein 2 OS=Homo sapien...	[more]

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TCONS_00023501-protein (polypeptide) - C. hemisphaerica