TCONS_00027029-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027029-protein
Unique NameTCONS_00027029-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027029-protein ID=TCONS_00027029-protein|Name=TCONS_00027029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MSDSNTDNFVNSLFSKKLINELNITNINFNPVAQTGMTKTMLKISTAESK
ENADLVIPSKDVLSLLATSSNGDIRACINSLQFYCTDRNSIPKLRKKQPV
AKGKKTSSSSTKKDAQKIAGCIGEKDASLFLFRALGKVLYCKREDEYEDS
EKSLPSHLTRSKRKKLIEIPEEIYENTQISSDNYALYLHQNYPEFFTNID
EVVTVSSNCSQADHIGNSWENKHLQDYSASICARGMMYANARPSSAGGQS
GGWRPLHKPQWFDVFKTSNRNRKFVLDNFNGCHYSKQTLFTDIIPYIEKL
RSHSTNGLIREISSFPLQRSQQQHTRKNLQALSNDRSDVFADATDSIEHY
LTMASMRKKGDFHEFDDVSMNDVIDDVIEDFDDDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015184XLOC_015184Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027029TCONS_00027029Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.60coord: 32..89
e-value: 5.6E-11
score: 41.4
NoneNo IPR availablePFAMPF03215Rad17coord: 11..319
e-value: 4.1E-48
score: 164.5

Blast
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BLAST of TCONS_00027029-protein vs. Swiss-Prot (Human)
Match: RAD17 (Cell cycle checkpoint protein RAD17 OS=Homo sapiens GN=RAD17 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 6.111e-60
Identity = 134/350 (38.29%), Postives = 189/350 (54.00%), Query Frame = 0 
Query:    1 MSDS-NTDNFVNSLFSKKLINELNITNINFNPVAQTGMTKTMLKISTAESKENAD-LVIPSKDVLSLLATSSNGDIRACINSLQFYCTDRNSIPKLRKKQPVAKGKKTSSSSTKK-------DAQKIAGCIGEKDASLFLFRALGKVLYCKREDEYEDSEKSLPSHLTRSKRKKLIEIPEEIYENTQISSDNYALYLHQNYPEFFTNIDEVVTVSSNCSQADHIGNSWENKH-LQDYSASICARGMMYANARPSSAGGQSGG--WRPLHKPQWFDVFKTSNRNRKFVLDNFNGCHYSKQTLFTDIIPYIEKL----RSHSTNGLIREISSFPLQRSQQQHTRKNLQALSN 334
            +SDS + DN    LF K++  E +I+NI+FNPVA T M K + +I T E+ +N   + +P K  L LL    +GDIR+ INSLQF  +   +  + RKK    K     S S ++       + Q++   IG KD SLFLFRALGK+LYCKR    E     LPSHL+  +R  L+  PEE+ E + +  D + LYLHQNY +FF  ID++V  S   S AD +   W  +  L++YS SI  RG+M++N     A  Q GG  +RPLHKPQWF + K    N       F         L T ++PY+  L    R+ +    I++I   PL+R      R  ++AL++
Sbjct:  258 ISDSLSGDNNQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAINSLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQA-IGGKDVSLFLFRALGKILYCKRASLTELDSPRLPSHLSEYERDTLLVEPEEVVEMSHMPGDLFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWNTRSLLREYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFPDFCLPALCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKR---HFGRLKMEALTD 603
The following BLAST results are available for this feature:
BLAST of TCONS_00027029-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAD176.111e-6038.29Cell cycle checkpoint protein RAD17 OS=Homo sapien... [more]
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