TCONS_00027043-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027043-protein
Unique NameTCONS_00027043-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length176

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027043-protein ID=TCONS_00027043-protein|Name=TCONS_00027043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
FSFVFQLIKEIISSLYQIKMANRTVTDAKTVRGTNPQYLVEKITRTRIYE
CKYWKEHCFALTAELMVDKAMELKAVGGTFGGNVKPTPFICLVLKMLQIQ
PEKDIVVEFIRNEDYKYVRALGAFYMRLVGTSLDCYKYLEPLYNDYRKMR
KKDKVGGKLTYTRHRGFFLRSNVYFT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015191XLOC_015191Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027043TCONS_00027043Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 30..156
e-value: 4.2E-47
score: 160.1

Blast
[Close]
BLAST of TCONS_00027043-protein vs. Swiss-Prot (Human)
Match: PR38A (Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.042e-79
Identity = 105/137 (76.64%), Postives = 122/137 (89.05%), Query Frame = 0 
Query:   20 MANRTVTDAKTVRGTNPQYLVEKITRTRIYECKYWKEHCFALTAELMVDKAMELKAVGGTFGGNVKPTPFICLVLKMLQIQPEKDIVVEFIRNEDYKYVRALGAFYMRLVGTSLDCYKYLEPLYNDYRKMRKKDKVG 156
            MANRTV DA ++ GTNPQYLVEKI RTRIYE KYWKE CF LTAEL+VDKAMEL+ VGG +GGN+KPTPF+CL LKMLQIQPEKDI+VEFI+NED+KYVR LGA YMRL GT++DCYKYLEPLYNDYRK++ +++ G
Sbjct:    1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNG 137
The following BLAST results are available for this feature:
BLAST of TCONS_00027043-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PR38A6.042e-7976.64Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PR... [more]
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